BCL11A ZF4-6 in Complex with a DNA Sequence Observed in the Human Globin Locus Containing Motif TGTCCA (12-mer)

entry_id	9ylm
deposition_date	2025-10-08
title	BCL11A ZF4-6 in Complex with a DNA Sequence Observed in the Human Globin Locus Containing Motif TGTCCA (12-mer)
keywords	TRANSCRIPTION FACTOR, DNA BINDING, TRANSCRIPTION, TRANSCRIPTION-DNA COMPLEX, GLOBIN LOCUS, DNA BINDING PROTEIN; TRANSCRIPTION/DNA
method	X-RAY DIFFRACTION

rg_guinier	16.92 Å
rg_electron	16.63 Å
i0	10303100.00
molecular_weight	17855.0 kDa
excluded_volume	19684 ų
envelope_volume	24937 ų
shell_volume	13272 ų
envelope_diameter	59.2 Å
shell_rg	21.70 Å
envelope_rg	16.94 Å
shape_rg	16.60 Å
total_rg	17.39 Å
total_atoms	1205
n_residues	111
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	57.2 Å
rg_real	16.92 Å
rg_real_error	0.51 Å
i0_real	1.0300e+07
i0_real_error	1.3100e+05
rg_reciprocal	16.92 Å
i0_reciprocal	10300000.0000
total_estimate	0.7729
solution_quality	GOOD a GOOD solution
n_peaks	4
r_peak_primary	19.6 Å
skewness	0.366
kurtosis	-0.246
angular_range	— – 0.4700 Å−1
current_alpha	0.0000
highest_alpha	1218000.0000
n_real_points	77
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.700; Stabil: 0.991; Sysdev: 1.000; Positv: 1.000; Valcen: 0.972; Smooth: 0.000

Unit Cell

length_a	56.617 Å
length_b	56.617 Å
length_c	154.831 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

Symmetry

space_group	P 41 21 2
int_tables_number	92
crystal_system	tetragonal

Refinement

resolution	1.910 Å
resolution_low	31.950 Å
r_factor	0.2068
r_work	0.2050
r_free	0.2441

Diffraction

temperature

100.0 K

Files (7)

• pr_distribution /app/data/pr_computation/yl/9ylm/pr_distribution.json
• pr_output /app/data/pr_computation/yl/9ylm/9ylm.pr.out
• pr_plot /app/data/visualization/pr_computation/yl/9ylm/9ylm_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/yl/9ylm/9ylm.dat
• saxs_fit /app/data/saxs_computation/yl/9ylm/9ylm.fit
• saxs_log /app/data/saxs_computation/yl/9ylm/9ylm.log
• saxs_plot /app/data/visualization/saxs_computation/yl/9ylm/9ylm_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/yl/9ylm/9ylm.fit
pddf	/app/data/pr_computation/yl/9ylm/9ylm.pr.out
profile	/app/data/saxs_computation/yl/9ylm/9ylm.dat