BCL11A ZF2-3 in Complex with a DNA Sequence Observed in the Human Globin Locus Containing Motif TGTCCA (P21212 crystal form)

entry_id	9ylo
deposition_date	2025-10-08
title	BCL11A ZF2-3 in Complex with a DNA Sequence Observed in the Human Globin Locus Containing Motif TGTCCA (P21212 crystal form)
keywords	TRANSCRIPTION FACTOR, DNA BINDING, TRANSCRIPTION, TRANSCRIPTION-DNA COMPLEX, GLOBIN LOCUS, DNA BINDING PROTEIN; TRANSCRIPTION/DNA
method	X-RAY DIFFRACTION

rg_guinier	14.88 Å
rg_electron	14.13 Å
i0	6700720.00
molecular_weight	13716.0 kDa
excluded_volume	14863 ų
envelope_volume	18561 ų
shell_volume	11478 ų
envelope_diameter	47.8 Å
shell_rg	19.39 Å
envelope_rg	14.33 Å
shape_rg	14.07 Å
total_rg	15.05 Å
total_atoms	923
n_residues	77
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	48.4 Å
rg_real	14.79 Å
rg_real_error	0.31 Å
i0_real	6.7010e+06
i0_real_error	8.1310e+04
rg_reciprocal	14.80 Å
i0_reciprocal	6701000.0000
total_estimate	0.8890
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	19.0 Å
skewness	0.158
kurtosis	-0.393
angular_range	— – 0.5000 Å−1
current_alpha	0.0000
highest_alpha	618100.0000
n_real_points	80
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.855; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.987

Unit Cell

length_a	122.384 Å
length_b	29.964 Å
length_c	39.113 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	4

Symmetry

space_group	P 21 21 2
int_tables_number	18
crystal_system	orthorhombic

Refinement

resolution	1.970 Å
resolution_low	29.100 Å
r_factor	0.2159
r_work	0.2145
r_free	0.2415

Diffraction

temperature

100.0 K

Files (7)

• pr_distribution /app/data/pr_computation/yl/9ylo/pr_distribution.json
• pr_output /app/data/pr_computation/yl/9ylo/9ylo.pr.out
• pr_plot /app/data/visualization/pr_computation/yl/9ylo/9ylo_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/yl/9ylo/9ylo.dat
• saxs_fit /app/data/saxs_computation/yl/9ylo/9ylo.fit
• saxs_log /app/data/saxs_computation/yl/9ylo/9ylo.log
• saxs_plot /app/data/visualization/saxs_computation/yl/9ylo/9ylo_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/yl/9ylo/9ylo.fit
pddf	/app/data/pr_computation/yl/9ylo/9ylo.pr.out
profile	/app/data/saxs_computation/yl/9ylo/9ylo.dat