9yn9
Crystal structure of nucleoside-diphosphate kinase Cryptosporidium parvum (GMP complex)
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9yn9 |
| deposition_date | 2025-10-10 |
| last_revision | 2025-10-22 |
| title | Crystal structure of nucleoside-diphosphate kinase Cryptosporidium parvum (GMP complex) |
| keywords | SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, nucleoside-diphosphate kinase, TRANSFERASE; TRANSFERASE |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 25.03 Å |
| rg_electron | 24.51 Å |
| i0 | 44199800.00 |
| molecular_weight | 51227.0 kDa |
| excluded_volume | 64070 ų |
| envelope_volume | 76681 ų |
| shell_volume | 25950 ų |
| envelope_diameter | 80.0 Å |
| shell_rg | 31.74 Å |
| envelope_rg | 24.67 Å |
| shape_rg | 24.53 Å |
| total_rg | 25.27 Å |
| total_atoms | 3590 |
| n_residues | 447 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 77.3 Å |
| rg_real | 24.98 Å |
| rg_real_error | 0.37 Å |
| i0_real | 4.4200e+07 |
| i0_real_error | 5.1500e+05 |
| rg_reciprocal | 25.00 Å |
| i0_reciprocal | 44200000.0000 |
| total_estimate | 0.9112 |
| solution_quality | EXCELLENT a EXCELLENT solution |
| n_peaks | 2 |
| r_peak_primary | 25.8 Å |
| skewness | 0.198 |
| kurtosis | -0.662 |
| angular_range | — – 0.3150 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 20290000.0000 |
| n_real_points | 64 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.961; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.987; Smooth: 0.972 |