9z4w
Cryo-EM structure of rabbit major vault protein complex
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9z4w |
| deposition_date | 2025-11-11 |
| title | Cryo-EM structure of rabbit major vault protein complex |
| keywords | complex, MVP, vault cap, trafficking, STRUCTURAL PROTEIN; STRUCTURAL PROTEIN |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | — Å |
| rg_electron | 227.60 Å |
| i0 | 653661000000.00 |
| molecular_weight | 6969500.0 kDa |
| excluded_volume | 8747300 ų |
| envelope_volume | 47530000 ų |
| shell_volume | 1882000 ų |
| envelope_diameter | 673.6 Å |
| shell_rg | 224.40 Å |
| envelope_rg | 186.90 Å |
| shape_rg | 227.50 Å |
| total_rg | 228.00 Å |
| total_atoms | 491504 |
| n_residues | 62530 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 632.4 Å |
| rg_real | 227.70 Å |
| rg_real_error | 2.49 Å |
| i0_real | 6.4160e+11 |
| i0_real_error | 1.7730e+10 |
| rg_reciprocal | 171.60 Å |
| i0_reciprocal | 361100000000.0000 |
| total_estimate | 0.8843 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 1 |
| r_peak_primary | 361.4 Å |
| skewness | -0.063 |
| kurtosis | -0.552 |
| angular_range | — – 0.0350 Å−1 |
| current_alpha | 2.2800 |
| highest_alpha | 31860000000.0000 |
| n_real_points | 8 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 9.160; Oscil: 0.973; Stabil: 0.910; Sysdev: 1.000; Positv: 1.000; Valcen: 0.861; Smooth: 0.000 |