9z5n
Cryo-EM structure of rabbit vault cap
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9z5n |
| deposition_date | 2025-11-12 |
| title | Cryo-EM structure of rabbit vault cap |
| keywords | complex, MVP, vault cap, trafficking, STRUCTURAL PROTEIN; STRUCTURAL PROTEIN |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 70.75 Å |
| rg_electron | 70.14 Å |
| i0 | 2004640000.00 |
| molecular_weight | 394500.0 kDa |
| excluded_volume | 502310 ų |
| envelope_volume | 1064300 ų |
| shell_volume | 124690 ų |
| envelope_diameter | 198.1 Å |
| shell_rg | 72.96 Å |
| envelope_rg | 66.61 Å |
| shape_rg | 70.13 Å |
| total_rg | 70.22 Å |
| total_atoms | 56719 |
| n_residues | 3653 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 210.6 Å |
| rg_real | 70.63 Å |
| rg_real_error | 1.47 Å |
| i0_real | 2.0050e+09 |
| i0_real_error | 4.0930e+07 |
| rg_reciprocal | 70.91 Å |
| i0_reciprocal | 2005000000.0000 |
| total_estimate | 0.8450 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 1 |
| r_peak_primary | 86.1 Å |
| skewness | 0.075 |
| kurtosis | -0.819 |
| angular_range | — – 0.1100 Å−1 |
| current_alpha | 0.0007 |
| highest_alpha | 83940000.0000 |
| n_real_points | 23 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.998; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.986; Smooth: 0.000 |