9zdh
Crystal structure of rubredoxin from piezophilic hyperthermophilic archaeon Pyrococcus yayanosii
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9zdh |
| deposition_date | 2025-11-25 |
| title | Crystal structure of rubredoxin from piezophilic hyperthermophilic archaeon Pyrococcus yayanosii |
| keywords | rubredoxin, electron transfer, piezophilic, hyperthermophilic, archae, ELECTRON TRANSPORT; ELECTRON TRANSPORT |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 17.83 Å |
| rg_electron | 17.05 Å |
| i0 | 6454070.00 |
| molecular_weight | 17814.0 kDa |
| excluded_volume | 21860 ų |
| envelope_volume | 26270 ų |
| shell_volume | 13583 ų |
| envelope_diameter | 59.9 Å |
| shell_rg | 21.96 Å |
| envelope_rg | 16.96 Å |
| shape_rg | 17.05 Å |
| total_rg | 17.91 Å |
| total_atoms | 1237 |
| n_residues | 156 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 59.2 Å |
| rg_real | 17.78 Å |
| rg_real_error | 0.41 Å |
| i0_real | 6.4540e+06 |
| i0_real_error | 7.9890e+04 |
| rg_reciprocal | 17.79 Å |
| i0_reciprocal | 6454000.0000 |
| total_estimate | 0.8885 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 1 |
| r_peak_primary | 58.4 Å |
| skewness | 0.199 |
| kurtosis | -0.512 |
| angular_range | — – 0.4450 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 1220000.0000 |
| n_real_points | 75 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.865; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.993; Smooth: 0.959 |