9zdi
Crystal structure of Zn-substituted Rubredoxin from hyperthermophilic bacterium Thermotoga maritima MSB8
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9zdi |
| deposition_date | 2025-11-25 |
| title | Crystal structure of Zn-substituted Rubredoxin from hyperthermophilic bacterium Thermotoga maritima MSB8 |
| keywords | rubredoxin, electron transfer, hyperthermophilic, ELECTRON TRANSPORT; ELECTRON TRANSPORT |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 14.58 Å |
| rg_electron | 13.34 Å |
| i0 | 3036630.00 |
| molecular_weight | 11794.0 kDa |
| excluded_volume | 14465 ų |
| envelope_volume | 15999 ų |
| shell_volume | 10523 ų |
| envelope_diameter | 46.0 Å |
| shell_rg | 18.67 Å |
| envelope_rg | 13.61 Å |
| shape_rg | 13.27 Å |
| total_rg | 14.62 Å |
| total_atoms | 818 |
| n_residues | 104 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 47.7 Å |
| rg_real | 14.53 Å |
| rg_real_error | 0.29 Å |
| i0_real | 3.0370e+06 |
| i0_real_error | 3.3550e+04 |
| rg_reciprocal | 14.53 Å |
| i0_reciprocal | 3037000.0000 |
| total_estimate | 0.8885 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 17.5 Å |
| skewness | 0.248 |
| kurtosis | -0.304 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 376300.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.853; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.998; Smooth: 0.989 |