CryoEM structure of aldehyde dehydrogenase from Burkholderia cenocepacia at 2.33A resolution

Method: ELECTRON MICROSCOPY D_max: 113.3 Å Quality: EXCELLENT

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	9zh8
deposition_date	2025-12-03
title	CryoEM structure of aldehyde dehydrogenase from Burkholderia cenocepacia at 2.33A resolution
keywords	;aldehyde dehydrogenase, pathogenic bacteria, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID, OXIDOREDUCTASE ;; OXIDOREDUCTASE
method	ELECTRON MICROSCOPY

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	37.11 Å
rg_electron	36.16 Å
i0	597496000.00
molecular_weight	201870.0 kDa
excluded_volume	253910 Å³
envelope_volume	307540 Å³
shell_volume	67402 Å³
envelope_diameter	112.7 Å
shell_rg	44.99 Å
envelope_rg	36.07 Å
shape_rg	36.16 Å
total_rg	36.68 Å
total_atoms	14240
n_residues	1908
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	113.3 Å
rg_real	36.84 Å
rg_real_error	0.77 Å
i0_real	5.9750e+08
i0_real_error	9.9590e+06
rg_reciprocal	37.01 Å
i0_reciprocal	597600000.0000
total_estimate	0.9029
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	1
r_peak_primary	47.4 Å
skewness	0.067
kurtosis	-0.581
angular_range	— – 0.2150 Å⁻¹
current_alpha	0.0000
highest_alpha	129400000.0000
n_real_points	44
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.936; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.980; Smooth: 0.946

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (2)

▶

6. Citations (1)

▶

length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	2.330 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

resolution	2.33 Å
resolution_method	—
num_particles	1703143

description	Aldehyde dehydrogenase
formula_weight	50941.1 kDa
src_method	man
entity_count	4

CryoEM structure of aldehyde dehydrogenase from Burkholderia cenocepacia at 2.33A resolution

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

EM 3D

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Burkholderia cenocepacia
ncbi_taxonomy_id	95486
host_organism	;Escherichia coli 'BL21-Gold(DE3)pLysS AG' ;

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	647

fit	/app/data/saxs_computation/zh/9zh8/9zh8.fit
pddf	/app/data/pr_computation/zh/9zh8/9zh8.pr.out
profile	/app/data/saxs_computation/zh/9zh8/9zh8.dat

type	polypeptide(L)
strand_id	A,B,C,D
atom_count	14919