9zk6
Crystal structure of a C2 domain containing protein from Trichomonas vaginalis in complex with pyrophosphate
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9zk6 |
| deposition_date | 2025-12-05 |
| last_revision | 2025-12-17 |
| title | Crystal structure of a C2 domain containing protein from Trichomonas vaginalis in complex with pyrophosphate |
| keywords | SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, C2 domain, LIPID BINDING PROTEIN; LIPID BINDING PROTEIN |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 20.87 Å |
| rg_electron | 20.04 Å |
| i0 | 13635500.00 |
| molecular_weight | 28692.0 kDa |
| excluded_volume | 36400 ų |
| envelope_volume | 43348 ų |
| shell_volume | 18378 ų |
| envelope_diameter | 69.3 Å |
| shell_rg | 25.90 Å |
| envelope_rg | 20.41 Å |
| shape_rg | 20.03 Å |
| total_rg | 20.96 Å |
| total_atoms | 2021 |
| n_residues | 251 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 67.8 Å |
| rg_real | 20.82 Å |
| rg_real_error | 0.39 Å |
| i0_real | 1.3640e+07 |
| i0_real_error | 1.6710e+05 |
| rg_reciprocal | 20.83 Å |
| i0_reciprocal | 13640000.0000 |
| total_estimate | 0.8984 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 1 |
| r_peak_primary | 66.8 Å |
| skewness | 0.240 |
| kurtosis | -0.444 |
| angular_range | — – 0.3800 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 2463000.0000 |
| n_real_points | 70 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.900; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.996; Smooth: 0.979 |