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9zm7

Crystal structure of Fab 7160 in complex with junctional region from circumsporozoite protein

Method: X-RAY DIFFRACTION D_max: 174.9 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9zm7
deposition_date	2025-12-09
title	Crystal structure of Fab 7160 in complex with junctional region from circumsporozoite protein
keywords	Antibody for Malaria, IMMUNE SYSTEM; IMMUNE SYSTEM
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	52.97 Å
rg_electron	52.64 Å
i0	2204140000.00
molecular_weight	389090.0 kDa
excluded_volume	485440 Å³
envelope_volume	702280 Å³
shell_volume	110430 Å³
envelope_diameter	187.6 Å
shell_rg	56.80 Å
envelope_rg	51.34 Å
shape_rg	52.62 Å
total_rg	52.82 Å
total_atoms	27397
n_residues	3495
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	174.9 Å
rg_real	52.82 Å
rg_real_error	1.36 Å
i0_real	2.2040e+09
i0_real_error	3.9310e+07
rg_reciprocal	53.09 Å
i0_reciprocal	2205000000.0000
total_estimate	0.8680
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	70.0 Å
skewness	0.242
kurtosis	-0.245
angular_range	— – 0.1500 Å⁻¹
current_alpha	0.0000
highest_alpha	178400000.0000
n_real_points	31
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.841; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.962; Smooth: 0.794

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	Heavy Chain of Fab 7160
formula_weight	24421.5 kDa
src_method	man
entity_count	8

Polymer

type	polypeptide(L)
strand_id	I,A,D,G,M,P,S,V
atom_count	27733

EVQLVESGGGLVQPGRSLRVSCTTSGFTFGDYAMSWFRQAPGKGLEWVGFIRSKGYGGTPEYAASVKGRFTISRDDSKRTAYLQMNSLKTEDTAVYYCTRVGIEVSTAVYWGPGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHLC

Source

organism	Homo sapiens
ncbi_taxonomy_id	9606
host_organism	Cricetulus griseus

Entity 2 polymer

description	Light Chain of Fab 7160
formula_weight	24246.1 kDa
src_method	man
entity_count	8

Polymer

type	polypeptide(L)
strand_id	J,B,E,H,N,Q,T,W

DIVMTQTPLSLSVTPGQPASISCKSSQSLLDNDGKTYLYWYLQKPGQSPQLVIYEVSNRFSGVPDRFSGSGSGTDFTLKIRRVEAEDVGVYYCMQRIDLPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC

Source

organism	Homo sapiens
ncbi_taxonomy_id	9606
host_organism	Cricetulus griseus

Entity 3 polymer

description	Circumsporozoite protein
formula_weight	1659.7 kDa
src_method	man
entity_count	8

Polymer

type	polypeptide(L)
strand_id	K,C,F,L,O,R,U,X

NPDPNANPNVDPNANP

Source

organism	Plasmodium falciparum 3D7
ncbi_taxonomy_id	36329
host_organism	synthetic construct

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	336

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6. Citations (1)

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length_a	88.190 Å
length_b	105.127 Å
length_c	405.183 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	32

space_group	P 21 2 21
int_tables_number	18
crystal_system	—

resolution	2.300 Å
resolution_low	29.880 Å
r_factor	0.2291
r_work	0.2285
r_free	0.2748

fit	/app/data/saxs_computation/zm/9zm7/9zm7.fit
pddf	/app/data/pr_computation/zm/9zm7/9zm7.pr.out
profile	/app/data/saxs_computation/zm/9zm7/9zm7.dat

Crystal structure of Fab 7160 in complex with junctional region from circumsporozoite protein

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (4)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 polymer

Polymer

Source

Entity 4 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)