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9zm9

Crystal structure of Fab 7160 in complex with short major repeat region (NPNA3) from circumsporozoite protein

Method: X-RAY DIFFRACTION D_max: 126.3 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9zm9
deposition_date	2025-12-09
title	Crystal structure of Fab 7160 in complex with short major repeat region (NPNA3) from circumsporozoite protein
keywords	Antibody, IMMUNE SYSTEM; IMMUNE SYSTEM
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	37.69 Å
rg_electron	37.85 Å
i0	148082000.00
molecular_weight	97023.0 kDa
excluded_volume	121010 Å³
envelope_volume	161390 Å³
shell_volume	37469 Å³
envelope_diameter	134.9 Å
shell_rg	41.01 Å
envelope_rg	37.34 Å
shape_rg	37.81 Å
total_rg	38.23 Å
total_atoms	6831
n_residues	872
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	126.3 Å
rg_real	38.03 Å
rg_real_error	1.21 Å
i0_real	1.4810e+08
i0_real_error	2.8380e+06
rg_reciprocal	37.83 Å
i0_reciprocal	148100000.0000
total_estimate	0.8467
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	33.1 Å
skewness	0.459
kurtosis	-0.491
angular_range	— – 0.2100 Å⁻¹
current_alpha	0.0000
highest_alpha	14070000.0000
n_real_points	43
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.811; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.842; Smooth: 0.728

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	Heavy Chain of Fab 7160
formula_weight	24421.5 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,C
atom_count	7200

EVQLVESGGGLVQPGRSLRVSCTTSGFTFGDYAMSWFRQAPGKGLEWVGFIRSKGYGGTPEYAASVKGRFTISRDDSKRTAYLQMNSLKTEDTAVYYCTRVGIEVSTAVYWGPGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHLC

Source

organism	Homo sapiens
ncbi_taxonomy_id	9606
host_organism	Cricetulus griseus

Entity 2 polymer

description	Light Chain of Fab 7160
formula_weight	24246.1 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	B,D

DIVMTQTPLSLSVTPGQPASISCKSSQSLLDNDGKTYLYWYLQKPGQSPQLVIYEVSNRFSGVPDRFSGSGSGTDFTLKIRRVEAEDVGVYYCMQRIDLPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC

Source

organism	Homo sapiens
ncbi_taxonomy_id	9606
host_organism	Cricetulus griseus

Entity 3 polymer

description	Circumsporozoite protein
formula_weight	1207.2 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	E,F

NPNANPNANPNA

Source

organism	Plasmodium falciparum 3D7
ncbi_taxonomy_id	36329
host_organism	synthetic construct

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	369

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6. Citations (1)

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length_a	188.010 Å
length_b	52.348 Å
length_c	102.986 Å
angle_alpha	90.00 °
angle_beta	110.07 °
angle_gamma	90.00 °
z_pdb	8

space_group	C 1 2 1
int_tables_number	5
crystal_system	—

resolution	1.880 Å
resolution_low	26.790 Å
r_factor	0.2009
r_work	0.1997
r_free	0.2452

fit	/app/data/saxs_computation/zm/9zm9/9zm9.fit
pddf	/app/data/pr_computation/zm/9zm9/9zm9.pr.out
profile	/app/data/saxs_computation/zm/9zm9/9zm9.dat

Crystal structure of Fab 7160 in complex with short major repeat region (NPNA3) from circumsporozoite protein

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (4)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 polymer

Polymer

Source

Entity 4 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)