← Back to search

9zsc

Flavophos biosynthetic enzyme BsfD

Method: X-RAY DIFFRACTION D_max: 61.9 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	9zsc
deposition_date	2025-12-22
title	Flavophos biosynthetic enzyme BsfD
keywords	Phosphonate BkACE, BIOSYNTHETIC PROTEIN; BIOSYNTHETIC PROTEIN
method	X-RAY DIFFRACTION

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	19.04 Å
rg_electron	17.94 Å
i0	18133200.00
molecular_weight	31967.0 kDa
excluded_volume	39952 Å³
envelope_volume	45614 Å³
shell_volume	20642 Å³
envelope_diameter	63.9 Å
shell_rg	24.98 Å
envelope_rg	18.23 Å
shape_rg	17.95 Å
total_rg	18.88 Å
total_atoms	2242
n_residues	295
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	61.9 Å
rg_real	18.89 Å
rg_real_error	0.37 Å
i0_real	1.8130e+07
i0_real_error	2.3830e+05
rg_reciprocal	18.91 Å
i0_reciprocal	18130000.0000
total_estimate	0.6180
solution_quality	REASONABLE a REASONABLE solution
n_peaks	3
r_peak_primary	24.9 Å
skewness	0.112
kurtosis	-0.331
angular_range	— – 0.4200 Å⁻¹
current_alpha	0.0000
highest_alpha	6812000.0000
n_real_points	73
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.771; Stabil: 0.999; Sysdev: 0.242; Positv: 1.000; Valcen: 0.992; Smooth: 0.000

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (4)

Entity 1 polymer

description	3-keto-5-aminohexanoate cleavage protein
formula_weight	32231.1 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	2482

MATRRTILTCAVTGSQTRLEQNPHLPITPKQIADASLEAADAGAAIVHLHVRDPETGRASMELAHYQEVVDRIRQKNPALIVNITTGPGGRFQPGDVDPAVAGPRTNLLPPERRVAHLPSLRPDIATLDLDTMFFGSEVVINTPPTIRAIARAIHACGAVPELELFDIGNLHLARDLFDEGVLRLPAIASIIVGIKYGMPATTEAMTLARSMLPPGVEWTGFSIGRHAFPMLAQSFVLGGHVRIGMEDTIYIEKGKLAASNAELVDKAKWIVEQLGGELASAEEAREQLRIGEPRALAA

Source

organism	Burkholderia stagnalis
ncbi_taxonomy_id	1503054
host_organism	Escherichia coli BL21(DE3)

Entity 2 non-polymer

description	ZINC ION
formula_weight	65.4 kDa
src_method	syn
entity_count	1

Entity 3 non-polymer

description	SULFATE ION
formula_weight	96.1 kDa
src_method	syn
entity_count	2

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	240

▶

6. Citations (1)

▶

length_a	53.469 Å
length_b	120.238 Å
length_c	121.458 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	I 2 2 2
int_tables_number	23
crystal_system	—

resolution	1.720 Å
resolution_low	25.000 Å
r_factor	0.1823
r_work	0.1814
r_free	0.1993

fit	/app/data/saxs_computation/zs/9zsc/9zsc.fit
pddf	/app/data/pr_computation/zs/9zsc/9zsc.pr.out
profile	/app/data/saxs_computation/zs/9zsc/9zsc.dat

Flavophos biosynthetic enzyme BsfD

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction