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Protein Structures and Oligomeric States

Enter a protein name, UniProt accession or PDB ID. Name searches ask you to confirm the protein identity before related structures are queried.

Current Protein Identity：B8YK79 New Search
15PDB entries
16Biological assembly
21chain/assembly records
Main Difference Dimensions in This Set
Different construct Different mutation/modification Different assembly state Different ligand/ion Different experimental conditions Different structure-quality metrics

Difference tags compare only the current result set; every original PDB and assembly record remains separate.

Related-Structure Differences

Each row represents one biological assembly in one PDB entry; multiple monomers of the same protein are listed separately.

PDB Entry Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Experimental Method Experimental Conditions Structure Quality
3OTP Crystal structure of the DegP dodecamer with a model substrate Deposited 2010-09-13 Assembly 1 Protein heterocomplex Heteromer；Protein × 24 PDB declaration: 24-meric（24） Consistent with protein count
Chain G 36–76（41 aa） Fragment：a model peptide substrate
Chain H 36–76（41 aa） Fragment：a model peptide substrate
Chain I 36–76（41 aa） Fragment：a model peptide substrate
Chain J 36–76（41 aa） Fragment：a model peptide substrate
Chain K 36–76（41 aa） Fragment：a model peptide substrate
Chain L 36–76（41 aa） Fragment：a model peptide substrate
Mutation：C30S Mutation：C30S Mutation：C30S Mutation：C30S Mutation：C30S Mutation：C30S No recorded non-water small molecule X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 3.6；291 K；65 mM citric acid, 35 mM Bis-Tris propane, 8% PEG3350, pH 3.6, VAPOR DIFFUSION, HANGING DROP, temperature 18K, temperature 291K
Resolution 3.76 Å R-free 0.251
5A3Z Structure of monoclinic Lysozyme obtained by multi crystal data collection Deposited 2015-06-04 Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain A 1–147（147 aa）
Not recorded NO3 NITRATE ION × 1 X-RAY DIFFRACTION mmCIF provides none of the parsed conditions Resolution 1.59 Å R-free 0.265
5A3Z Structure of monoclinic Lysozyme obtained by multi crystal data collection Deposited 2015-06-04 Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain B 1–147（147 aa）
Not recorded NO3 NITRATE ION × 1 GOL GLYCEROL × 1 X-RAY DIFFRACTION mmCIF provides none of the parsed conditions Resolution 1.59 Å R-free 0.265
6PBB Crystal structure of Hen Egg White Lysozyme in complex with I3C Deposited 2019-06-13 Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain A 19–147（129 aa）
Not recorded I3C 5-amino-2,4,6-triiodobenzene-1,3-dicarboxylic acid × 4 CL CHLORIDE ION × 1 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, SITTING DROP；pH 7.1；289 K；0.2 M Ammonium acetate, 20% w/v Polyethylene glycol 3,350
Resolution 1.89 Å R-free 0.240
6PL9 Adduct formed after 1 month in the reaction of dichlorido(1,3-dimethylbenzimidaz ol-2-ylidene)(eta5-pentamethylcyclopentadienyl)rhodium(III) with HEWL Deposited 2019-06-30 Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain A 19–147（129 aa）
Not recorded ORS dichloro[(1,2,3,4,5-eta)-pentamethylcyclopentadienyl]rhodium × 1 R1N 2-(1-chloranyl-2,3,4,5,6-pentamethyl-1$l^{7}-rhodapentacyclo[2.2.0.0^{1,3}.0^{1,5}.0^{2,6}]hexan-1-yl)-1,3-dimethyl-benzimidazole × 1 NA SODIUM ION × 1 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；297 K；Hen egg white lysozyme (100mg/mL), 0.8 M sodium chloride, and 0.1 M sodium acetate pH 4.7. Rh(III)(Cp*)(1,3-dimethylbenzimidazol-2-ylidene)(Cl)2 (1.09 mg, 1 mg/mL) soak occurred in 0.8 M sodium nitrate and 0.1 M sodium acetate pH 4.7
Resolution 1.20 Å R-free 0.203
6PLA Adducts formed after 1 month in the reaction of dichlorido(1,3-dimethylbenzimidazol-2-ylidene)(eta6-p-cymene)osmium(II) with HEWL Deposited 2019-06-30 Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain A 19–147（129 aa）
Not recorded NA SODIUM ION × 1 O1N dichlorido(1,3-dimethylbenzimidazol-2-ylidene)(eta6-p-cymene)osmium(II) × 2 OS OSMIUM ION × 1 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；297 K；Hen egg white lysozyme (100mg/mL), 0.8 M sodium chloride, and 0.1 M sodium acetate pH 4.7. Os(II)(cymene)(1,3-dimethylbenzimidazol-2-ylidene)(Cl)2 (1.04 mg, 1 mg/mL) soak occurred in 0.8 M sodium nitrate and 0.1 M sodium acetate pH 4.7
Resolution 1.25 Å R-free 0.184
6PLB Adducts formed after 1 month in the reaction of dichlorido(1,3-dimethylbenzimida zol-2-ylidene)(eta5-pentamethylcyclopentadienyl)iridium(III) with HEWL Deposited 2019-06-30 Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain A 19–147（129 aa）
Not recorded OT1 2-(1-chloranyl-2,3,4,5,6-pentamethyl-1$l^{7}-iridapentacyclo[2.2.0.0^{1,3}.0^{1,5}.0^{2,6}]hexan-1-yl)-1,3-dimethyl-benzimidazole × 1 NA SODIUM ION × 1 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；297 K；Hen egg white lysozyme (100mg/mL), 0.8 M sodium chloride, and 0.1 M sodium acetate pH 4.7. Ir(III)(Cp*)(1,3-dimethylbenzimidazol-2-ylidene)(chlorido)2 (1.13 mg, 1 mg/mL) soak occurred in 0.8 M sodium nitrate and 0.1 M sodium acetate pH 4.7
Resolution 1.30 Å R-free 0.190
6W7P Crystal Structure Analysis of Space-grown Lysozyme - Ground experiment Deposited 2020-03-19 Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain A 19–147（129 aa）
Not recorded NA SODIUM ION × 1 CL CHLORIDE ION × 4 X-RAY DIFFRACTION
X-ray crystallization conditions LIQUID DIFFUSION；pH 4.6；296 K；PEG 6000, NaCl, Na Acetate
Resolution 1.60 Å R-free 0.220
6W8E Crystal Structure Analysis of Space-grown Lysozyme Deposited 2020-03-20 Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain A 19–147（129 aa）
Not recorded CL CHLORIDE ION × 1 X-RAY DIFFRACTION
X-ray crystallization conditions LIQUID DIFFUSION；pH 4.6；296 K；PEG 6000, NaCl, Na Acetate
Resolution 2.68 Å R-free 0.306
6WEB Multi-Hit SFX using MHz XFEL sources Deposited 2020-04-01 Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain A 19–147（129 aa）
Not recorded ACT ACETATE ION × 1 EDO 1,2-ETHANEDIOL × 1 CL CHLORIDE ION × 1 X-RAY DIFFRACTION
X-ray crystallization conditions BATCH MODE；pH 3.5；293 K；NaCl, ethylene glycol, PEG 3350, acetate buffer pH 3.5
Resolution 2.10 Å R-free 0.216
6WEC Multi-Hit SFX using MHz XFEL sources Deposited 2020-04-01 Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain A 19–147（129 aa）
Not recorded CL CHLORIDE ION × 3 EDO 1,2-ETHANEDIOL × 5 ACT ACETATE ION × 4 X-RAY DIFFRACTION
X-ray crystallization conditions BATCH MODE；pH 3.5；293 K；NaCl, ethylene glycol, PEG 3350, acetate buffer pH 3.5
Resolution 2.10 Å R-free 0.299
6WGO The interaction of dichlorido(3-(anthracen-9-ylmethyl)-1-methylimidazol-2-ylidene)(eta6-p-cymene)ruthenium(II) with HEWL after 1 week Deposited 2020-04-06 Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain A 19–147（129 aa）
Not recorded NA SODIUM ION × 1 ACT ACETATE ION × 2 U0J {(2R)-1-[(anthracen-9-yl)methyl]-3-methyl-2,3-dihydro-1H-imidazol-2-yl}(dichloro)ruthenium × 1 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 4.7；291 K；0.1 M Sodium Acetate pH 4.7 and 0.8 M Sodium Chloride
Resolution 1.30 Å R-free 0.192
6WRL The interaction of chlorido(1,5-cyclooctadiene)([4-(2-((tert-butoxycarbonyl)amino)-3-methoxy-3-oxopropyl)-1,3-dimethyl-1H-imidazol-3-ide])rhodium(I) with HEWL after 1 week Deposited 2020-04-29 Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain A 19–147（129 aa）
Not recorded NA SODIUM ION × 1 ACT ACETATE ION × 3 RH Rhodium × 1 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 4.7；291 K；0.1 M Sodium Acetate pH 4.7 and 0.8 M Sodium Chloride
Resolution 1.35 Å R-free 0.215
6WRM The interaction of chlorido(1,5-cyclooctadiene)([4-(2-((tert-butoxycarbonyl)amino)-3-methoxy-3-oxopropyl)-1,3-dimethyl-1H-imidazol-3-ide])rhodium(I) with HEWL after 1 month Deposited 2020-04-29 Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain A 19–147（129 aa）
Not recorded NA SODIUM ION × 1 CL CHLORIDE ION × 2 RH Rhodium × 1 U8G (4-{2-[(tert-butoxycarbonyl)amino]-3-methoxy-3-oxopropyl}-1,3-dimethyl-2,3-dihydro-1H-imidazol-2-yl)rhodium × 1 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 4.7；291 K；0.1 M Sodium Acetate pH 4.7 and 0.8 M Sodium Chloride
Resolution 1.55 Å R-free 0.249
6WX5 Adducts formed after 3 weeks in the reaction of chlorido[chlorido(2,2'-((2-([2,2':6',2''-Terpyridin]-4'-yloxy)ethyl)azanediyl)bis(ethan-1-ol))platinum(II)] with HEWL Deposited 2020-05-09 Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain A 19–147（129 aa）
Not recorded NA SODIUM ION × 1 ACT ACETATE ION × 1 PT PLATINUM (II) ION × 1 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 4.7；291 K；0.1 M Sodium Acetate pH 4.7 and 0.8 M Sodium Chloride pH 4.7
Resolution 1.30 Å R-free 0.202
7D0W Crystal structure of Hen Egg White Lysozyme Deposited 2020-09-12 Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain A 19–147（129 aa）
Not recorded CL CHLORIDE ION × 2 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 5.6；298.15 K；PEG 3000, TRIS pH 5.6
Resolution 1.80 Å R-free 0.226

This page presents structural evidence recorded in PDB/mmCIF.“No recorded non-water small molecule” does not prove that the experimental sample was ligand-free; experimental conditions belong to the PDB experiment, while ligands and copy counts are shown for each biological assembly.