Current Protein Identity：G0SFB5
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Difference tags compare only the current result set; every original PDB and assembly record remains separate.
Related-Structure Differences
Each row represents one biological assembly in one PDB entry; multiple monomers of the same protein are listed separately.
| PDB Entry | Assembly / Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Non-polymers | Experimental Method | Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|---|
| 5CXB Structure of Ytm1 bound to the C-terminal domain of Erb1 in P21 21 2 space group Deposited 2015-07-28 | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric（2） Consistent with protein count |
Chain A
1–495（495 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 3 NA SODIUM ION × 1 GOL GLYCEROL × 2 CL CHLORIDE ION × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；294 K；20% PEG 8000, 0.1M Hepes pH 7.5
|
Resolution 2.10 Å R-free 0.213 |
| 5CXC Structure of Ytm1 bound to the C-terminal domain of Erb1 in P 65 2 2 space group Deposited 2015-07-28 | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric（2） Consistent with protein count |
Chain A
1–495（495 aa）
Fragment：UNP residues 433-801
|
Not recorded | CL CHLORIDE ION × 2 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION；pH 5.6；294 K；15% PEG 4000,0.1M Na citrate pH 5.6, 0.2M Ammonium sulfate
|
Resolution 3.10 Å R-free 0.239 |
| 5CYK Structure of Ytm1 bound to the C-terminal domain of Erb1-R486E Deposited 2015-07-30 | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric（2） Consistent with protein count |
Chain A
1–495（495 aa）
|
Not recorded | CL CHLORIDE ION × 5 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；297 K；0.1M Hepes pH 7.5,
2M Ammonium Sulfate
|
Resolution 3.00 Å R-free 0.262 |
| 5EM2 Crystal structure of the Erb1-Ytm1 complex Deposited 2015-11-05 | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric（2） Consistent with protein count |
Chain B
1–495（495 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 6 MG MAGNESIUM ION × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；291.15 K；20-28% ethylene glycol
|
Resolution 2.67 Å R-free 0.251 |
| 5EM2 Crystal structure of the Erb1-Ytm1 complex Deposited 2015-11-05 | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric（2） Consistent with protein count |
Chain D
1–495（495 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 5 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；291.15 K；20-28% ethylene glycol
|
Resolution 2.67 Å R-free 0.251 |
| 6QTB Crystal structure of Rea1-MIDAS/Ytm1-UBL complex from Chaetomium thermophilum Deposited 2019-02-22 | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric（2） Consistent with protein count |
Chain B
8–98（91 aa）
|
Not recorded | MG MAGNESIUM ION × 1 GOL GLYCEROL × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；291 K；3 M NaCl and 0.1 M Tris (pH 8.5)
|
Resolution 1.89 Å R-free 0.213 |
| 6QTB Crystal structure of Rea1-MIDAS/Ytm1-UBL complex from Chaetomium thermophilum Deposited 2019-02-22 | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric（2） Consistent with protein count |
Chain E
8–98（91 aa）
|
Not recorded | MG MAGNESIUM ION × 1 GOL GLYCEROL × 2 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；291 K；3 M NaCl and 0.1 M Tris (pH 8.5)
|
Resolution 1.89 Å R-free 0.213 |
| 8I9X Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-1 Deposited 2023-02-07 | Assembly 1 Protein–RNA Heteromer；Protein × 58 PDB declaration: 60-meric（60） Consistent with all polymers |
Chain CD
1–495（495 aa）
|
Not recorded | GTP GUANOSINE-5'-TRIPHOSPHATE × 1 ZN ZINC ION × 2 | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.80 Å |
| 8I9Y Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2 Deposited 2023-02-07 | Assembly 1 Protein–RNA Heteromer；Protein × 57 PDB declaration: 59-meric（59） Consistent with all polymers |
Chain CD
1–495（495 aa）
|
Not recorded | GTP GUANOSINE-5'-TRIPHOSPHATE × 1 ZN ZINC ION × 2 | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å |
| 8I9Z Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4 Deposited 2023-02-07 | Assembly 1 Protein–RNA Heteromer；Protein × 58 PDB declaration: 60-meric（60） Consistent with all polymers |
Chain CD
1–495（495 aa）
|
Not recorded | GTP GUANOSINE-5'-TRIPHOSPHATE × 1 ZN ZINC ION × 2 ADP ADENOSINE-5'-DIPHOSPHATE × 1 MG MAGNESIUM ION × 1 | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.70 Å |
| 8IA0 Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6 Deposited 2023-02-07 | Assembly 1 Protein–RNA Heteromer；Protein × 62 PDB declaration: 64-meric（64） Consistent with all polymers |
Chain CD
1–495（495 aa）
|
Not recorded | GTP GUANOSINE-5'-TRIPHOSPHATE × 1 ZN ZINC ION × 3 ADP ADENOSINE-5'-DIPHOSPHATE × 1 MG MAGNESIUM ION × 1 | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.70 Å |
| 8PV2 Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1 Deposited 2023-07-17 | Assembly 1 Protein–RNA Heteromer；Protein × 54 PDB declaration: 57-meric（57） Consistent with all polymers |
Chain CD
1–495（495 aa）
|
Not recorded | GTP GUANOSINE-5'-TRIPHOSPHATE × 2 MG MAGNESIUM ION × 3 ZN ZINC ION × 5 | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.63 Å |