← Back to search

Protein Structures and Oligomeric States

Enter a protein name, UniProt accession or PDB ID. Name searches ask you to confirm the protein identity before related structures are queried.

Current Protein Identity：O60493 New Search
6PDB entries
9Biological assembly
9chain/assembly records
Main Difference Dimensions in This Set
Different construct Different mutation/modification Different assembly state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics

Difference tags compare only the current result set; every original PDB and assembly record remains separate.

Related-Structure Differences

Each row represents one biological assembly in one PDB entry; multiple monomers of the same protein are listed separately.

PDB Entry Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Experimental Method Experimental Conditions Structure Quality
2MXC Solution structure of the full length sorting nexin 3 Deposited 2014-12-20 Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain A 2–162（161 aa）
Not recorded No recorded non-water small molecule SOLUTION NMR
NMR measurement conditions pH 6.5；298 K；Ionic strength (raw mmCIF value) 0.100；Pressure 1.000
NMR sample composition 0.5 mM [U-100% 13C; U-100% 15N] SNX3FL, 90% H2O/10% D2O | 90% H2O/10% D2O
Resolution not provided
2YPS Crystal structure of the PX domain of human sorting nexin 3 Deposited 2012-10-31 Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain A 24–155（132 aa） Fragment：PX DOMAIN, RESIDUES 24-155
Not recorded No recorded non-water small molecule X-RAY DIFFRACTION
X-ray crystallization conditions 3.5M FORMATE
Resolution 2.60 Å R-free 0.255
2YPS Crystal structure of the PX domain of human sorting nexin 3 Deposited 2012-10-31 Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain B 24–155（132 aa） Fragment：PX DOMAIN, RESIDUES 24-155
Not recorded No recorded non-water small molecule X-RAY DIFFRACTION
X-ray crystallization conditions 3.5M FORMATE
Resolution 2.60 Å R-free 0.255
2YPS Crystal structure of the PX domain of human sorting nexin 3 Deposited 2012-10-31 Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain C 24–155（132 aa） Fragment：PX DOMAIN, RESIDUES 24-155
Not recorded No recorded non-water small molecule X-RAY DIFFRACTION
X-ray crystallization conditions 3.5M FORMATE
Resolution 2.60 Å R-free 0.255
2YPS Crystal structure of the PX domain of human sorting nexin 3 Deposited 2012-10-31 Assembly 4 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain D 24–155（132 aa） Fragment：PX DOMAIN, RESIDUES 24-155
Not recorded No recorded non-water small molecule X-RAY DIFFRACTION
X-ray crystallization conditions 3.5M FORMATE
Resolution 2.60 Å R-free 0.255
5F0J Structure of retromer VPS26-VPS35 subunits bound to SNX3 Deposited 2015-11-27 Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric（3） Consistent with protein count
Chain C 1–162（162 aa）
Not recorded SO4 SULFATE ION × 6 GOL GLYCEROL × 5 EDO 1,2-ETHANEDIOL × 24 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 6；291 K；0.9 M AmSO4, 0.1 M MES pH 6.0
Resolution 2.70 Å R-free 0.246
5F0L Structure of retromer VPS26-VPS35 subunits bound to SNX3 and DMT1 Deposited 2015-11-27 Assembly 1 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric（4） Consistent with protein count
Chain C 1–162（162 aa） Fragment：Residues 14-470
Not recorded SO4 SULFATE ION × 10 GOL GLYCEROL × 6 EDO 1,2-ETHANEDIOL × 18 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 6；291 K；0.75 M AmSO4, 0.1 M MES pH 6.0, 15% Glycerol
Resolution 3.20 Å R-free 0.259
5F0M Structure of retromer VPS26-VPS35 subunits bound to SNX3 and DMT1 (SeMet labeled) Deposited 2015-11-27 Assembly 1 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric（4） Consistent with protein count
Chain C 1–162（162 aa） Fragment：Residues 14-470
Not recorded SO4 SULFATE ION × 6 GOL GLYCEROL × 5 EDO 1,2-ETHANEDIOL × 12 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 6；291 K；0.8 M AmSO4, 0.1 M MES pH 6.0, 5% Glycerol
Resolution 3.10 Å R-free 0.254
5F0P Structure of retromer VPS26-VPS35 subunits bound to SNX3 and DMT1(L557M) (SeMet labeled) Deposited 2015-11-27 Assembly 1 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric（4） Consistent with protein count
Chain C 1–162（162 aa） Fragment：Residues 1-162
Not recorded SO4 SULFATE ION × 6 GOL GLYCEROL × 4 EDO 1,2-ETHANEDIOL × 20 ZN ZINC ION × 1 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 6；291 K；0.8 M AmSO4, 0.1 M MES pH 6.0, 10% Glycerol
Resolution 2.78 Å R-free 0.261

This page presents structural evidence recorded in PDB/mmCIF.“No recorded non-water small molecule” does not prove that the experimental sample was ligand-free; experimental conditions belong to the PDB experiment, while ligands and copy counts are shown for each biological assembly.