Current Protein Identity:P0ADN6 New Search
Main Difference Dimensions in This Set
Different construct Different assembly state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics

Difference tags compare only the current result set; every original PDB and assembly record remains separate.

Related-Structure Differences

Each row represents one biological assembly in one PDB entry; multiple monomers of the same protein are listed separately.

PDB Entry Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Experimental Method Experimental Conditions Structure Quality
8H1R Crystal structure of LptDE-YifL complex Deposited 2022-10-03 Assembly 1 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count
Chain C 1–67(67 aa)
Not recorded PCJ (2R)-3-{[(2S)-3-HYDROXY-2-(PALMITOYLAMINO)PROPYL]THIO}PROPANE-1,2-DIYL DIHEXADECANOATE × 1 X-RAY DIFFRACTION
X-ray crystallization conditions EVAPORATION;289 K;175 mM citric acid/Bis-Tris (pH 5.0), 17% (v/v) PEG3350 and 3% methanol (as additive)
Resolution 2.98 Å R-free 0.264
8H1R Crystal structure of LptDE-YifL complex Deposited 2022-10-03 Assembly 2 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count
Chain F 1–67(67 aa)
Not recorded PCJ (2R)-3-{[(2S)-3-HYDROXY-2-(PALMITOYLAMINO)PROPYL]THIO}PROPANE-1,2-DIYL DIHEXADECANOATE × 1 X-RAY DIFFRACTION
X-ray crystallization conditions EVAPORATION;289 K;175 mM citric acid/Bis-Tris (pH 5.0), 17% (v/v) PEG3350 and 3% methanol (as additive)
Resolution 2.98 Å R-free 0.264
9IA2 LpDEM from Escherichia coli Deposited 2025-02-07 Assembly 1 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count
Chain C 1–67(67 aa)
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 8
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.47 Å
9IA5 LpDEM from Escherichia coli Deposited 2025-02-07 Assembly 1 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count
Chain D 1–67(67 aa)
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 8
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.63 Å
9KN3 Cryo-EM structure of LptDEM complex from Escherichia coli Deposited 2024-11-18 Assembly 1 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count
Chain C 20–67(48 aa)
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 8
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.27 Å
9RPR Cryo-EM structure of LptDEM complex containing Shigella flexneri LptE and endogenous E. coli LptD and LptM Deposited 2025-06-25 Assembly 1 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count
Chain C 20–67(48 aa)
Not recorded PLM PALMITIC ACID × 1 PXS (2S)-propane-1,2-diyl dihexadecanoate × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5;10mM HEPES, pH7.5, 100mM NaCl, 0.05% (w/v) DDM
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.78 Å
9RPS Cryo-EM structure of Shigella flexneri LptDE in complex with RTP45 superinfection exclusion protein from RTP bacteriophage and endogenous LptM Deposited 2025-06-25 Assembly 1 Protein heterocomplex Heteromer;Protein × 4 PDB declaration: tetrameric(4) Consistent with protein count
Chain C 20–67(48 aa)
Not recorded PLM PALMITIC ACID × 1 PXS (2S)-propane-1,2-diyl dihexadecanoate × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5;10mM HEPES, pH7.5, 100mM NaCl, 0.05% (w/v) DDM
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.01 Å