当前蛋白身份：P0DQD2
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差异标签只比较当前检索结果；所有PDB和assembly原始记录仍分别保留。
相关结构差异明细
一行代表一个 PDB 条目中的一个 biological assembly；同一蛋白的多个单体会分别列出。
| PDB 条目 | Assembly / 聚集状态 | 构建体 | 突变与修饰 | 配体、离子与非聚合物 | 实验方法 | 实验环境 | 结构质量 |
|---|---|---|---|---|---|---|---|
| 7NMS InlB392_T332E: T332E variant of Listeria monocytogenes InlB (internalin B) residues 36-392 提交 2021-02-23 | Assembly 1 蛋白单体 单体；蛋白 × 1 PDB 声明：monomeric（1） 与蛋白数一致 |
链 A
36–392（357 aa）
|
突变：T332E | SO4 SULFATE ION × 3 GOL GLYCEROL × 2 PEG DI(HYDROXYETHYL)ETHER × 1 | X-RAY DIFFRACTION |
X-ray结晶条件
VAPOR DIFFUSION, SITTING DROP；pH 7；277 K；Reservoir solution: 0.1 M succinate, pH 7.0, 0.2 M Li2SO4, 22.5 % PEG mixture consisting of equal amounts of eight low molecular weight PEGs (PEG 300, PEG 400, PEG 500MME, PEG 550MME, PEG 600, PEG 750MME, PEG 1,000, PEG 1,000MME);
Protein solution: 10 mg/ml in 10 mM Tris, pH 8.0, 20 mM NaCl;
Drop size: 100 nl + 100 nl (protein + reservoir)
|
分辨率 1.80 Å R-free 0.217 |
| 7PV8 InlB392_T332E: T332E variant of Listeria monocytogenes InlB (internalin B) residues 36-392 提交 2021-10-01 | Assembly 1 蛋白单体 单体；蛋白 × 1 PDB 声明：monomeric（1） 与蛋白数一致 |
链 A
36–392（357 aa）
|
突变：T332E | EDO 1,2-ETHANEDIOL × 1 K POTASSIUM ION × 1 | X-RAY DIFFRACTION |
X-ray结晶条件
VAPOR DIFFUSION, SITTING DROP；pH 6.5；277 K；Reservoir solution (Morpheus screen (Molecular Dimensions) condition G2): 0.1 M (imidazole / MES), pH 6.5; 20 % v/v ethylene glycol; 10 % w/v PEG 8,000; 0.02 M sodium formate; 0.02 M ammonium acetate; 0.02 M sodium citrate tribasic dehydrate; 0.02 M sodium potassium tartrate tetrahydrate; 0.02 M sodium oxamate;
Protein solution: 10 mg/ml in 10 mM Tris, pH 8.0, 20 mM NaCl;
Drop size: 100 nl + 100 nl (protein + reservoir)
|
分辨率 2.05 Å R-free 0.229 |
| 7PV9 Listeria monocytogene InlB (internalin B) residues 36-392 (internalin domain and B-repeat) 提交 2021-10-01 | Assembly 1 蛋白单体 单体；蛋白 × 1 PDB 声明：monomeric（1） 与蛋白数一致 |
链 A
36–392（357 aa）
|
未记录 | 未记录非水小分子 | X-RAY DIFFRACTION |
X-ray结晶条件
VAPOR DIFFUSION, SITTING DROP；pH 7.5；293 K；Reservoir solution (Morpheus screen (Molecular Dimensions) condition E6): 0.1 M (HEPES sodium salt / MOPS acid), pH 7.5, 20 % v/v ethylene glycol, 10 % w/v PEG 8,000, 0.03 M diethylene glycol, 0.03 M triethylene-glycol, 0.03 M tetraethylene glycol, 0.03 M pentaethylene glycol;
Protein solution: 10 mg/ml in 10 mM Tris, pH 8.0, 20 mM NaCl;
Drop size: 100 nl + 100 nl (protein + reservoir)
|
分辨率 3.30 Å R-free 0.272 |
| 7PV9 Listeria monocytogene InlB (internalin B) residues 36-392 (internalin domain and B-repeat) 提交 2021-10-01 | Assembly 2 蛋白单体 单体；蛋白 × 1 PDB 声明：monomeric（1） 与蛋白数一致 |
链 B
36–392（357 aa）
|
未记录 | 未记录非水小分子 | X-RAY DIFFRACTION |
X-ray结晶条件
VAPOR DIFFUSION, SITTING DROP；pH 7.5；293 K；Reservoir solution (Morpheus screen (Molecular Dimensions) condition E6): 0.1 M (HEPES sodium salt / MOPS acid), pH 7.5, 20 % v/v ethylene glycol, 10 % w/v PEG 8,000, 0.03 M diethylene glycol, 0.03 M triethylene-glycol, 0.03 M tetraethylene glycol, 0.03 M pentaethylene glycol;
Protein solution: 10 mg/ml in 10 mM Tris, pH 8.0, 20 mM NaCl;
Drop size: 100 nl + 100 nl (protein + reservoir)
|
分辨率 3.30 Å R-free 0.272 |
| 7PV9 Listeria monocytogene InlB (internalin B) residues 36-392 (internalin domain and B-repeat) 提交 2021-10-01 | Assembly 3 蛋白单体 单体；蛋白 × 1 PDB 声明：monomeric（1） 与蛋白数一致 |
链 C
36–392（357 aa）
|
未记录 | 未记录非水小分子 | X-RAY DIFFRACTION |
X-ray结晶条件
VAPOR DIFFUSION, SITTING DROP；pH 7.5；293 K；Reservoir solution (Morpheus screen (Molecular Dimensions) condition E6): 0.1 M (HEPES sodium salt / MOPS acid), pH 7.5, 20 % v/v ethylene glycol, 10 % w/v PEG 8,000, 0.03 M diethylene glycol, 0.03 M triethylene-glycol, 0.03 M tetraethylene glycol, 0.03 M pentaethylene glycol;
Protein solution: 10 mg/ml in 10 mM Tris, pH 8.0, 20 mM NaCl;
Drop size: 100 nl + 100 nl (protein + reservoir)
|
分辨率 3.30 Å R-free 0.272 |
| 8QP7 Crystal structure of Hepatitis C Virus E2 glycoprotein epitopeI 411-424 scaffold design 4CIL_04 提交 2023-09-30 | Assembly 1 信息不足 单体；蛋白 × 1 PDB 声明：monomeric（1） 与蛋白数一致 |
链 A
84–321（238 aa）
|
未记录 | 未记录非水小分子 | X-RAY DIFFRACTION |
X-ray结晶条件
VAPOR DIFFUSION, SITTING DROP；pH 9；293 K；25% (w/v) PEG 1500, 100 mM MMT buffer pH 9.0
|
分辨率 2.05 Å R-free 0.262 |
| 9QR4 InlB392_T336Y: T336Y variant of Listeria monocytogenes InlB (internalin B) residues 36-392 提交 2025-04-03 | Assembly 1 蛋白单体 单体；蛋白 × 1 PDB 声明：monomeric（1） 与蛋白数一致 |
链 A
36–392（357 aa）
|
突变：T336Y | GOL GLYCEROL × 3 | X-RAY DIFFRACTION |
X-ray结晶条件
VAPOR DIFFUSION, SITTING DROP；pH 6.5；277 K；Reservoir solution: MORPHEUS Screen, Condition F3: 0.1 M mixture of imidazole and MES (acid) pH 6.5, 10% PEG4000, 20% glycerol, 0.02 M of each monosaccaharide: D-glucose, D-mannose, D-galactose, L-fucose, D-xylose, N-acetyl-D-glucosamine.
Protein buffer: 10 mM Tris pH 8.0, 20 mM NaCl.
Protein concentration: 10 mg/ml.
Drop size: 1 ul protein + 1 ul reservoir.
|
分辨率 1.60 Å R-free 0.196 |
| 9QR4 InlB392_T336Y: T336Y variant of Listeria monocytogenes InlB (internalin B) residues 36-392 提交 2025-04-03 | Assembly 2 蛋白单体 单体；蛋白 × 1 PDB 声明：monomeric（1） 与蛋白数一致 |
链 B
36–392（357 aa）
|
突变：T336Y | GOL GLYCEROL × 5 | X-RAY DIFFRACTION |
X-ray结晶条件
VAPOR DIFFUSION, SITTING DROP；pH 6.5；277 K；Reservoir solution: MORPHEUS Screen, Condition F3: 0.1 M mixture of imidazole and MES (acid) pH 6.5, 10% PEG4000, 20% glycerol, 0.02 M of each monosaccaharide: D-glucose, D-mannose, D-galactose, L-fucose, D-xylose, N-acetyl-D-glucosamine.
Protein buffer: 10 mM Tris pH 8.0, 20 mM NaCl.
Protein concentration: 10 mg/ml.
Drop size: 1 ul protein + 1 ul reservoir.
|
分辨率 1.60 Å R-free 0.196 |
| 9QR4 InlB392_T336Y: T336Y variant of Listeria monocytogenes InlB (internalin B) residues 36-392 提交 2025-04-03 | Assembly 3 蛋白单体 单体；蛋白 × 1 PDB 声明：monomeric（1） 与蛋白数一致 |
链 C
36–392（357 aa）
|
突变：T336Y | GOL GLYCEROL × 3 | X-RAY DIFFRACTION |
X-ray结晶条件
VAPOR DIFFUSION, SITTING DROP；pH 6.5；277 K；Reservoir solution: MORPHEUS Screen, Condition F3: 0.1 M mixture of imidazole and MES (acid) pH 6.5, 10% PEG4000, 20% glycerol, 0.02 M of each monosaccaharide: D-glucose, D-mannose, D-galactose, L-fucose, D-xylose, N-acetyl-D-glucosamine.
Protein buffer: 10 mM Tris pH 8.0, 20 mM NaCl.
Protein concentration: 10 mg/ml.
Drop size: 1 ul protein + 1 ul reservoir.
|
分辨率 1.60 Å R-free 0.196 |
| 9QR5 InlB392_V333E: V333E variant of Listeria monocytogenes InlB (internalin B) residues 36-392 提交 2025-04-03 | Assembly 1 蛋白单体 单体；蛋白 × 1 PDB 声明：monomeric（1） 与蛋白数一致 |
链 A
36–392（357 aa）
|
突变：V333E | GOL GLYCEROL × 3 | X-RAY DIFFRACTION |
X-ray结晶条件
VAPOR DIFFUSION, SITTING DROP；pH 7.5；277 K；Reservoir solution: PEG Smear Screen Medium Molecular Weight, Condition E1: 0.1 M HEPES pH 7.5, 22.5% PEG medium molecular weight (MMW) mixture consisting of PEG1500, PEG2000, PEG2000MME, PEG3000, PEG3350, PEG4000, PEG5000MME. Protein Buffer: 10 mM Tris pH 8.0, 20 mM NaCl. Drop size: 200 nl protein + 100 nl reservoir.
|
分辨率 1.45 Å R-free 0.179 |