Current Protein Identity:P22535
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Difference tags compare only the current result set; every original PDB and assembly record remains separate.
Related-Structure Differences
Each row represents one biological assembly in one PDB entry; multiple monomers of the same protein are listed separately.
| PDB Entry | Assembly / Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Non-polymers | Experimental Method | Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|---|
| 1CJD THE BACTERIOPHAGE PRD1 COAT PROTEIN, P3, IS STRUCTURALLY SIMILAR TO HUMAN ADENOVIRUS HEXON Deposited 1999-04-12 | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count |
Chain A
1–394(394 aa)
Chain B
1–394(394 aa)
Chain C
1–394(394 aa)
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION |
X-ray crystallization conditions
pH 4.2;35% (W/V) MPD, 0.2 M NACL, 0.1 M SODIUM ACETATE, PH 4.2
|
Resolution 1.85 Å R-free 0.205 |
| 1GW7 QUASI-ATOMIC RESOLUTION MODEL OF BACTERIOPHAGE PRD1 CAPSID, OBTAINED BY COMBINED CRYO-EM AND X-RAY CRYSTALLOGRAPHY. Deposited 2002-03-08 | Assembly 1 Protein homooligomer Homooligomer;Protein × 720 PDB declaration: 720-MERIC(720) Consistent with protein count |
Chain A
1–394(394 aa)
Chain B
1–394(394 aa)
Chain C
1–394(394 aa)
Chain D
1–394(394 aa)
Chain E
1–394(394 aa)
Chain F
1–394(394 aa)
Chain G
1–394(394 aa)
Chain H
1–394(394 aa)
Chain I
1–394(394 aa)
Chain J
1–394(394 aa)
Chain K
1–394(394 aa)
Chain L
1–394(394 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
TRIS;pH 7.2;TRIS
cryo-EM vitrification conditions
Cryogen ETHANE;ETHANE
|
Resolution 13.50 Å |
| 1GW7 QUASI-ATOMIC RESOLUTION MODEL OF BACTERIOPHAGE PRD1 CAPSID, OBTAINED BY COMBINED CRYO-EM AND X-RAY CRYSTALLOGRAPHY. Deposited 2002-03-08 | Assembly 2 Protein homooligomer Homooligomer;Protein × 12 PDB declaration: dodecameric(12) Consistent with protein count |
Chain A
1–394(394 aa)
Chain B
1–394(394 aa)
Chain C
1–394(394 aa)
Chain D
1–394(394 aa)
Chain E
1–394(394 aa)
Chain F
1–394(394 aa)
Chain G
1–394(394 aa)
Chain H
1–394(394 aa)
Chain I
1–394(394 aa)
Chain J
1–394(394 aa)
Chain K
1–394(394 aa)
Chain L
1–394(394 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
TRIS;pH 7.2;TRIS
cryo-EM vitrification conditions
Cryogen ETHANE;ETHANE
|
Resolution 13.50 Å |
| 1GW7 QUASI-ATOMIC RESOLUTION MODEL OF BACTERIOPHAGE PRD1 CAPSID, OBTAINED BY COMBINED CRYO-EM AND X-RAY CRYSTALLOGRAPHY. Deposited 2002-03-08 | Assembly 3 Protein homooligomer Homooligomer;Protein × 60 PDB declaration: 60-meric(60) Consistent with protein count |
Chain A
1–394(394 aa)
Chain B
1–394(394 aa)
Chain C
1–394(394 aa)
Chain D
1–394(394 aa)
Chain E
1–394(394 aa)
Chain F
1–394(394 aa)
Chain G
1–394(394 aa)
Chain H
1–394(394 aa)
Chain I
1–394(394 aa)
Chain J
1–394(394 aa)
Chain K
1–394(394 aa)
Chain L
1–394(394 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
TRIS;pH 7.2;TRIS
cryo-EM vitrification conditions
Cryogen ETHANE;ETHANE
|
Resolution 13.50 Å |
| 1GW7 QUASI-ATOMIC RESOLUTION MODEL OF BACTERIOPHAGE PRD1 CAPSID, OBTAINED BY COMBINED CRYO-EM AND X-RAY CRYSTALLOGRAPHY. Deposited 2002-03-08 | Assembly 4 Protein homooligomer Homooligomer;Protein × 72 PDB declaration: 72-meric(72) Consistent with protein count |
Chain A
1–394(394 aa)
Chain B
1–394(394 aa)
Chain C
1–394(394 aa)
Chain D
1–394(394 aa)
Chain E
1–394(394 aa)
Chain F
1–394(394 aa)
Chain G
1–394(394 aa)
Chain H
1–394(394 aa)
Chain I
1–394(394 aa)
Chain J
1–394(394 aa)
Chain K
1–394(394 aa)
Chain L
1–394(394 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
TRIS;pH 7.2;TRIS
cryo-EM vitrification conditions
Cryogen ETHANE;ETHANE
|
Resolution 13.50 Å |
| 1GW7 QUASI-ATOMIC RESOLUTION MODEL OF BACTERIOPHAGE PRD1 CAPSID, OBTAINED BY COMBINED CRYO-EM AND X-RAY CRYSTALLOGRAPHY. Deposited 2002-03-08 | Assembly 5 Protein homooligomer Homooligomer;Protein × 12 PDB declaration: dodecameric(12) Consistent with protein count |
Chain A
1–394(394 aa)
Chain B
1–394(394 aa)
Chain C
1–394(394 aa)
Chain D
1–394(394 aa)
Chain E
1–394(394 aa)
Chain F
1–394(394 aa)
Chain G
1–394(394 aa)
Chain H
1–394(394 aa)
Chain I
1–394(394 aa)
Chain J
1–394(394 aa)
Chain K
1–394(394 aa)
Chain L
1–394(394 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
TRIS;pH 7.2;TRIS
cryo-EM vitrification conditions
Cryogen ETHANE;ETHANE
|
Resolution 13.50 Å |
| 1GW8 quasi-atomic resolution model of bacteriophage PRD1 sus607 mutant, obtained by combined cryo-EM and X-ray crystallography. Deposited 2002-03-08 | Assembly 1 Protein homooligomer Homooligomer;Protein × 720 PDB declaration: 720-MERIC(720) Consistent with protein count |
Chain A
1–394(394 aa)
Chain B
1–394(394 aa)
Chain C
1–394(394 aa)
Chain D
1–394(394 aa)
Chain E
1–394(394 aa)
Chain F
1–394(394 aa)
Chain G
1–394(394 aa)
Chain H
1–394(394 aa)
Chain I
1–394(394 aa)
Chain J
1–394(394 aa)
Chain K
1–394(394 aa)
Chain L
1–394(394 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
TRIS;pH 7.2;TRIS
cryo-EM vitrification conditions
Cryogen ETHANE;ETHANE
|
Resolution 13.30 Å |
| 1GW8 quasi-atomic resolution model of bacteriophage PRD1 sus607 mutant, obtained by combined cryo-EM and X-ray crystallography. Deposited 2002-03-08 | Assembly 2 Protein homooligomer Homooligomer;Protein × 12 PDB declaration: dodecameric(12) Consistent with protein count |
Chain A
1–394(394 aa)
Chain B
1–394(394 aa)
Chain C
1–394(394 aa)
Chain D
1–394(394 aa)
Chain E
1–394(394 aa)
Chain F
1–394(394 aa)
Chain G
1–394(394 aa)
Chain H
1–394(394 aa)
Chain I
1–394(394 aa)
Chain J
1–394(394 aa)
Chain K
1–394(394 aa)
Chain L
1–394(394 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
TRIS;pH 7.2;TRIS
cryo-EM vitrification conditions
Cryogen ETHANE;ETHANE
|
Resolution 13.30 Å |
| 1GW8 quasi-atomic resolution model of bacteriophage PRD1 sus607 mutant, obtained by combined cryo-EM and X-ray crystallography. Deposited 2002-03-08 | Assembly 3 Protein homooligomer Homooligomer;Protein × 60 PDB declaration: 60-meric(60) Consistent with protein count |
Chain A
1–394(394 aa)
Chain B
1–394(394 aa)
Chain C
1–394(394 aa)
Chain D
1–394(394 aa)
Chain E
1–394(394 aa)
Chain F
1–394(394 aa)
Chain G
1–394(394 aa)
Chain H
1–394(394 aa)
Chain I
1–394(394 aa)
Chain J
1–394(394 aa)
Chain K
1–394(394 aa)
Chain L
1–394(394 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
TRIS;pH 7.2;TRIS
cryo-EM vitrification conditions
Cryogen ETHANE;ETHANE
|
Resolution 13.30 Å |
| 1GW8 quasi-atomic resolution model of bacteriophage PRD1 sus607 mutant, obtained by combined cryo-EM and X-ray crystallography. Deposited 2002-03-08 | Assembly 4 Protein homooligomer Homooligomer;Protein × 72 PDB declaration: 72-meric(72) Consistent with protein count |
Chain A
1–394(394 aa)
Chain B
1–394(394 aa)
Chain C
1–394(394 aa)
Chain D
1–394(394 aa)
Chain E
1–394(394 aa)
Chain F
1–394(394 aa)
Chain G
1–394(394 aa)
Chain H
1–394(394 aa)
Chain I
1–394(394 aa)
Chain J
1–394(394 aa)
Chain K
1–394(394 aa)
Chain L
1–394(394 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
TRIS;pH 7.2;TRIS
cryo-EM vitrification conditions
Cryogen ETHANE;ETHANE
|
Resolution 13.30 Å |
| 1GW8 quasi-atomic resolution model of bacteriophage PRD1 sus607 mutant, obtained by combined cryo-EM and X-ray crystallography. Deposited 2002-03-08 | Assembly 5 Protein homooligomer Homooligomer;Protein × 12 PDB declaration: dodecameric(12) Consistent with protein count |
Chain A
1–394(394 aa)
Chain B
1–394(394 aa)
Chain C
1–394(394 aa)
Chain D
1–394(394 aa)
Chain E
1–394(394 aa)
Chain F
1–394(394 aa)
Chain G
1–394(394 aa)
Chain H
1–394(394 aa)
Chain I
1–394(394 aa)
Chain J
1–394(394 aa)
Chain K
1–394(394 aa)
Chain L
1–394(394 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
TRIS;pH 7.2;TRIS
cryo-EM vitrification conditions
Cryogen ETHANE;ETHANE
|
Resolution 13.30 Å |
| 1HB5 quasi-atomic resolution model of bacteriophage PRD1 P3-shell, obtained by combined cryo-EM and X-ray crystallography. Deposited 2001-04-11 | Assembly 1 Protein homooligomer Homooligomer;Protein × 540 PDB declaration: 540-MERIC(540) Consistent with protein count |
Chain A
1–394(394 aa)
Chain B
1–394(394 aa)
Chain C
1–394(394 aa)
Chain D
1–394(394 aa)
Chain E
1–394(394 aa)
Chain F
1–394(394 aa)
Chain G
1–394(394 aa)
Chain H
1–394(394 aa)
Chain I
1–394(394 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE;PLUNGE VITRIFICATION
|
Resolution 12.00 Å |
| 1HB5 quasi-atomic resolution model of bacteriophage PRD1 P3-shell, obtained by combined cryo-EM and X-ray crystallography. Deposited 2001-04-11 | Assembly 2 Protein homooligomer Homooligomer;Protein × 9 PDB declaration: nonameric(9) Consistent with protein count |
Chain A
1–394(394 aa)
Chain B
1–394(394 aa)
Chain C
1–394(394 aa)
Chain D
1–394(394 aa)
Chain E
1–394(394 aa)
Chain F
1–394(394 aa)
Chain G
1–394(394 aa)
Chain H
1–394(394 aa)
Chain I
1–394(394 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE;PLUNGE VITRIFICATION
|
Resolution 12.00 Å |
| 1HB5 quasi-atomic resolution model of bacteriophage PRD1 P3-shell, obtained by combined cryo-EM and X-ray crystallography. Deposited 2001-04-11 | Assembly 3 Protein homooligomer Homooligomer;Protein × 45 PDB declaration: 45-meric(45) Consistent with protein count |
Chain A
1–394(394 aa)
Chain B
1–394(394 aa)
Chain C
1–394(394 aa)
Chain D
1–394(394 aa)
Chain E
1–394(394 aa)
Chain F
1–394(394 aa)
Chain G
1–394(394 aa)
Chain H
1–394(394 aa)
Chain I
1–394(394 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE;PLUNGE VITRIFICATION
|
Resolution 12.00 Å |
| 1HB5 quasi-atomic resolution model of bacteriophage PRD1 P3-shell, obtained by combined cryo-EM and X-ray crystallography. Deposited 2001-04-11 | Assembly 4 Protein homooligomer Homooligomer;Protein × 54 PDB declaration: 54-meric(54) Consistent with protein count |
Chain A
1–394(394 aa)
Chain B
1–394(394 aa)
Chain C
1–394(394 aa)
Chain D
1–394(394 aa)
Chain E
1–394(394 aa)
Chain F
1–394(394 aa)
Chain G
1–394(394 aa)
Chain H
1–394(394 aa)
Chain I
1–394(394 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE;PLUNGE VITRIFICATION
|
Resolution 12.00 Å |
| 1HB5 quasi-atomic resolution model of bacteriophage PRD1 P3-shell, obtained by combined cryo-EM and X-ray crystallography. Deposited 2001-04-11 | Assembly 5 Protein homooligomer Homooligomer;Protein × 9 PDB declaration: nonameric(9) Consistent with protein count |
Chain A
1–394(394 aa)
Chain B
1–394(394 aa)
Chain C
1–394(394 aa)
Chain D
1–394(394 aa)
Chain E
1–394(394 aa)
Chain F
1–394(394 aa)
Chain G
1–394(394 aa)
Chain H
1–394(394 aa)
Chain I
1–394(394 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE;PLUNGE VITRIFICATION
|
Resolution 12.00 Å |
| 1HB7 quasi-atomic resolution model of bacteriophage PRD1 sus1 mutant, obtained by combined cryo-EM and X-ray crystallography. Deposited 2001-04-12 | Assembly 1 Protein homooligomer Homooligomer;Protein × 720 PDB declaration: 720-MERIC(720) Consistent with protein count |
Chain A
1–394(394 aa)
Chain B
1–394(394 aa)
Chain C
1–394(394 aa)
Chain D
1–394(394 aa)
Chain E
1–394(394 aa)
Chain F
1–394(394 aa)
Chain G
1–394(394 aa)
Chain H
1–394(394 aa)
Chain I
1–394(394 aa)
Chain J
1–394(394 aa)
Chain K
1–394(394 aa)
Chain L
1–394(394 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE;PLUNGE VITRIFICATION
|
Resolution 14.00 Å |
| 1HB7 quasi-atomic resolution model of bacteriophage PRD1 sus1 mutant, obtained by combined cryo-EM and X-ray crystallography. Deposited 2001-04-12 | Assembly 2 Protein homooligomer Homooligomer;Protein × 12 PDB declaration: dodecameric(12) Consistent with protein count |
Chain A
1–394(394 aa)
Chain B
1–394(394 aa)
Chain C
1–394(394 aa)
Chain D
1–394(394 aa)
Chain E
1–394(394 aa)
Chain F
1–394(394 aa)
Chain G
1–394(394 aa)
Chain H
1–394(394 aa)
Chain I
1–394(394 aa)
Chain J
1–394(394 aa)
Chain K
1–394(394 aa)
Chain L
1–394(394 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE;PLUNGE VITRIFICATION
|
Resolution 14.00 Å |
| 1HB7 quasi-atomic resolution model of bacteriophage PRD1 sus1 mutant, obtained by combined cryo-EM and X-ray crystallography. Deposited 2001-04-12 | Assembly 3 Protein homooligomer Homooligomer;Protein × 60 PDB declaration: 60-meric(60) Consistent with protein count |
Chain A
1–394(394 aa)
Chain B
1–394(394 aa)
Chain C
1–394(394 aa)
Chain D
1–394(394 aa)
Chain E
1–394(394 aa)
Chain F
1–394(394 aa)
Chain G
1–394(394 aa)
Chain H
1–394(394 aa)
Chain I
1–394(394 aa)
Chain J
1–394(394 aa)
Chain K
1–394(394 aa)
Chain L
1–394(394 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE;PLUNGE VITRIFICATION
|
Resolution 14.00 Å |
| 1HB7 quasi-atomic resolution model of bacteriophage PRD1 sus1 mutant, obtained by combined cryo-EM and X-ray crystallography. Deposited 2001-04-12 | Assembly 4 Protein homooligomer Homooligomer;Protein × 72 PDB declaration: 72-meric(72) Consistent with protein count |
Chain A
1–394(394 aa)
Chain B
1–394(394 aa)
Chain C
1–394(394 aa)
Chain D
1–394(394 aa)
Chain E
1–394(394 aa)
Chain F
1–394(394 aa)
Chain G
1–394(394 aa)
Chain H
1–394(394 aa)
Chain I
1–394(394 aa)
Chain J
1–394(394 aa)
Chain K
1–394(394 aa)
Chain L
1–394(394 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE;PLUNGE VITRIFICATION
|
Resolution 14.00 Å |
| 1HB7 quasi-atomic resolution model of bacteriophage PRD1 sus1 mutant, obtained by combined cryo-EM and X-ray crystallography. Deposited 2001-04-12 | Assembly 5 Protein homooligomer Homooligomer;Protein × 12 PDB declaration: dodecameric(12) Consistent with protein count |
Chain A
1–394(394 aa)
Chain B
1–394(394 aa)
Chain C
1–394(394 aa)
Chain D
1–394(394 aa)
Chain E
1–394(394 aa)
Chain F
1–394(394 aa)
Chain G
1–394(394 aa)
Chain H
1–394(394 aa)
Chain I
1–394(394 aa)
Chain J
1–394(394 aa)
Chain K
1–394(394 aa)
Chain L
1–394(394 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE;PLUNGE VITRIFICATION
|
Resolution 14.00 Å |
| 1HB9 quasi-atomic resolution model of bacteriophage PRD1 wild type virion, obtained by combined cryo-EM and X-ray crystallography. Deposited 2001-04-13 | Assembly 1 Protein homooligomer Homooligomer;Protein × 720 PDB declaration: 720-MERIC(720) Consistent with protein count |
Chain A
1–394(394 aa)
Chain B
1–394(394 aa)
Chain C
1–394(394 aa)
Chain D
1–394(394 aa)
Chain E
1–394(394 aa)
Chain F
1–394(394 aa)
Chain G
1–394(394 aa)
Chain H
1–394(394 aa)
Chain I
1–394(394 aa)
Chain J
1–394(394 aa)
Chain K
1–394(394 aa)
Chain L
1–394(394 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE;PLUNGE VITRIFICATION
|
Resolution 25.00 Å |
| 1HB9 quasi-atomic resolution model of bacteriophage PRD1 wild type virion, obtained by combined cryo-EM and X-ray crystallography. Deposited 2001-04-13 | Assembly 2 Protein homooligomer Homooligomer;Protein × 12 PDB declaration: dodecameric(12) Consistent with protein count |
Chain A
1–394(394 aa)
Chain B
1–394(394 aa)
Chain C
1–394(394 aa)
Chain D
1–394(394 aa)
Chain E
1–394(394 aa)
Chain F
1–394(394 aa)
Chain G
1–394(394 aa)
Chain H
1–394(394 aa)
Chain I
1–394(394 aa)
Chain J
1–394(394 aa)
Chain K
1–394(394 aa)
Chain L
1–394(394 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE;PLUNGE VITRIFICATION
|
Resolution 25.00 Å |
| 1HB9 quasi-atomic resolution model of bacteriophage PRD1 wild type virion, obtained by combined cryo-EM and X-ray crystallography. Deposited 2001-04-13 | Assembly 3 Protein homooligomer Homooligomer;Protein × 60 PDB declaration: 60-meric(60) Consistent with protein count |
Chain A
1–394(394 aa)
Chain B
1–394(394 aa)
Chain C
1–394(394 aa)
Chain D
1–394(394 aa)
Chain E
1–394(394 aa)
Chain F
1–394(394 aa)
Chain G
1–394(394 aa)
Chain H
1–394(394 aa)
Chain I
1–394(394 aa)
Chain J
1–394(394 aa)
Chain K
1–394(394 aa)
Chain L
1–394(394 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE;PLUNGE VITRIFICATION
|
Resolution 25.00 Å |
| 1HB9 quasi-atomic resolution model of bacteriophage PRD1 wild type virion, obtained by combined cryo-EM and X-ray crystallography. Deposited 2001-04-13 | Assembly 4 Protein homooligomer Homooligomer;Protein × 72 PDB declaration: 72-meric(72) Consistent with protein count |
Chain A
1–394(394 aa)
Chain B
1–394(394 aa)
Chain C
1–394(394 aa)
Chain D
1–394(394 aa)
Chain E
1–394(394 aa)
Chain F
1–394(394 aa)
Chain G
1–394(394 aa)
Chain H
1–394(394 aa)
Chain I
1–394(394 aa)
Chain J
1–394(394 aa)
Chain K
1–394(394 aa)
Chain L
1–394(394 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE;PLUNGE VITRIFICATION
|
Resolution 25.00 Å |
| 1HB9 quasi-atomic resolution model of bacteriophage PRD1 wild type virion, obtained by combined cryo-EM and X-ray crystallography. Deposited 2001-04-13 | Assembly 5 Protein homooligomer Homooligomer;Protein × 12 PDB declaration: dodecameric(12) Consistent with protein count |
Chain A
1–394(394 aa)
Chain B
1–394(394 aa)
Chain C
1–394(394 aa)
Chain D
1–394(394 aa)
Chain E
1–394(394 aa)
Chain F
1–394(394 aa)
Chain G
1–394(394 aa)
Chain H
1–394(394 aa)
Chain I
1–394(394 aa)
Chain J
1–394(394 aa)
Chain K
1–394(394 aa)
Chain L
1–394(394 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE;PLUNGE VITRIFICATION
|
Resolution 25.00 Å |
| 1HQN THE SELENOMETHIONINE DERIVATIVE OF P3, THE MAJOR COAT PROTEIN OF THE LIPID-CONTAINING BACTERIOPHAGE PRD1. Deposited 2000-12-18 | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count |
Chain A
1–394(394 aa)
Chain B
1–394(394 aa)
Chain C
1–394(394 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF) Non-standard monomer:Yes (specific site not provided by mmCIF) Non-standard monomer:Yes (specific site not provided by mmCIF) | No recorded non-water small molecule | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.2;298 K;30% MPD, 0.2 M NACL, 0.1 M SODIUM ACETATE, pH 4.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.20 Å R-free 0.227 |
| 1HX6 P3, THE MAJOR COAT PROTEIN OF THE LIPID-CONTAINING BACTERIOPHAGE PRD1. Deposited 2001-01-11 | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count |
Chain A
1–394(394 aa)
Chain B
1–394(394 aa)
Chain C
1–394(394 aa)
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 7 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 18 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.2;298 K;30% MPD, 0.1 M sodium acetate, 0.2 M NaCl, pH 4.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.65 Å R-free 0.208 |
| 1W8X Structural analysis of PRD1 Deposited 2004-10-01 | Assembly 1 Protein heterocomplex Heteromer;Protein × 900 PDB declaration: 900-MERIC(900) Consistent with protein count |
Chain A
1–395(395 aa)
Chain B
1–395(395 aa)
Chain C
1–395(395 aa)
Chain D
1–395(395 aa)
Chain E
1–395(395 aa)
Chain F
1–395(395 aa)
Chain G
1–395(395 aa)
Chain H
1–395(395 aa)
Chain I
1–395(395 aa)
Chain J
1–395(395 aa)
Chain K
1–395(395 aa)
Chain L
1–395(395 aa)
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION |
X-ray crystallization conditions
pH 7.2;3.7 W/V PEG 8000, 400 MM NACL 100 MM POTASSIUM PHOSPHATE BUFFER PH 7.2
|
Resolution 4.20 Å |
| 1W8X Structural analysis of PRD1 Deposited 2004-10-01 | Assembly 2 Protein heterocomplex Heteromer;Protein × 15 PDB declaration: pentadecameric(15) Consistent with protein count |
Chain A
1–395(395 aa)
Chain B
1–395(395 aa)
Chain C
1–395(395 aa)
Chain D
1–395(395 aa)
Chain E
1–395(395 aa)
Chain F
1–395(395 aa)
Chain G
1–395(395 aa)
Chain H
1–395(395 aa)
Chain I
1–395(395 aa)
Chain J
1–395(395 aa)
Chain K
1–395(395 aa)
Chain L
1–395(395 aa)
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION |
X-ray crystallization conditions
pH 7.2;3.7 W/V PEG 8000, 400 MM NACL 100 MM POTASSIUM PHOSPHATE BUFFER PH 7.2
|
Resolution 4.20 Å |
| 1W8X Structural analysis of PRD1 Deposited 2004-10-01 | Assembly 3 Protein heterocomplex Heteromer;Protein × 75 PDB declaration: 75-meric(75) Consistent with protein count |
Chain A
1–395(395 aa)
Chain B
1–395(395 aa)
Chain C
1–395(395 aa)
Chain D
1–395(395 aa)
Chain E
1–395(395 aa)
Chain F
1–395(395 aa)
Chain G
1–395(395 aa)
Chain H
1–395(395 aa)
Chain I
1–395(395 aa)
Chain J
1–395(395 aa)
Chain K
1–395(395 aa)
Chain L
1–395(395 aa)
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION |
X-ray crystallization conditions
pH 7.2;3.7 W/V PEG 8000, 400 MM NACL 100 MM POTASSIUM PHOSPHATE BUFFER PH 7.2
|
Resolution 4.20 Å |
| 1W8X Structural analysis of PRD1 Deposited 2004-10-01 | Assembly 4 Protein heterocomplex Heteromer;Protein × 90 PDB declaration: 90-meric(90) Consistent with protein count |
Chain A
1–395(395 aa)
Chain B
1–395(395 aa)
Chain C
1–395(395 aa)
Chain D
1–395(395 aa)
Chain E
1–395(395 aa)
Chain F
1–395(395 aa)
Chain G
1–395(395 aa)
Chain H
1–395(395 aa)
Chain I
1–395(395 aa)
Chain J
1–395(395 aa)
Chain K
1–395(395 aa)
Chain L
1–395(395 aa)
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION |
X-ray crystallization conditions
pH 7.2;3.7 W/V PEG 8000, 400 MM NACL 100 MM POTASSIUM PHOSPHATE BUFFER PH 7.2
|
Resolution 4.20 Å |
| 1W8X Structural analysis of PRD1 Deposited 2004-10-01 | Assembly 5 Protein heterocomplex Heteromer;Protein × 15 PDB declaration: pentadecameric(15) Consistent with protein count |
Chain A
1–395(395 aa)
Chain B
1–395(395 aa)
Chain C
1–395(395 aa)
Chain D
1–395(395 aa)
Chain E
1–395(395 aa)
Chain F
1–395(395 aa)
Chain G
1–395(395 aa)
Chain H
1–395(395 aa)
Chain I
1–395(395 aa)
Chain J
1–395(395 aa)
Chain K
1–395(395 aa)
Chain L
1–395(395 aa)
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION |
X-ray crystallization conditions
pH 7.2;3.7 W/V PEG 8000, 400 MM NACL 100 MM POTASSIUM PHOSPHATE BUFFER PH 7.2
|
Resolution 4.20 Å |
| 1W8X Structural analysis of PRD1 Deposited 2004-10-01 | Assembly 6 Protein heterocomplex Heteromer;Protein × 900 PDB declaration: 900-meric(900) Consistent with protein count |
Chain A
1–395(395 aa)
Chain B
1–395(395 aa)
Chain C
1–395(395 aa)
Chain D
1–395(395 aa)
Chain E
1–395(395 aa)
Chain F
1–395(395 aa)
Chain G
1–395(395 aa)
Chain H
1–395(395 aa)
Chain I
1–395(395 aa)
Chain J
1–395(395 aa)
Chain K
1–395(395 aa)
Chain L
1–395(395 aa)
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION |
X-ray crystallization conditions
pH 7.2;3.7 W/V PEG 8000, 400 MM NACL 100 MM POTASSIUM PHOSPHATE BUFFER PH 7.2
|
Resolution 4.20 Å |
| 7OOK Bacteriophage PRD1 Major Capsid Protein P3 in complex with CPZ Deposited 2021-05-27 | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count |
Chain A
1–395(395 aa)
Chain B
1–395(395 aa)
Chain C
1–395(395 aa)
|
Not recorded | NA SODIUM ION × 5 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 10 Z80 3-(2-chloro-10H-phenothiazin-10-yl)-N,N-dimethylpropan-1-amine × 3 CL CHLORIDE ION × 3 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;please see: PMID: 10499799
|
Resolution 2.23 Å R-free 0.216 |