Current Protein Identity:P22535 New Search
Main Difference Dimensions in This Set
Different construct Different mutation/modification Different assembly state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics

Difference tags compare only the current result set; every original PDB and assembly record remains separate.

Related-Structure Differences

Each row represents one biological assembly in one PDB entry; multiple monomers of the same protein are listed separately.

PDB Entry Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Experimental Method Experimental Conditions Structure Quality
1CJD THE BACTERIOPHAGE PRD1 COAT PROTEIN, P3, IS STRUCTURALLY SIMILAR TO HUMAN ADENOVIRUS HEXON Deposited 1999-04-12 Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count
Chain A 1–394(394 aa)
Chain B 1–394(394 aa)
Chain C 1–394(394 aa)
Not recorded No recorded non-water small molecule X-RAY DIFFRACTION
X-ray crystallization conditions pH 4.2;35% (W/V) MPD, 0.2 M NACL, 0.1 M SODIUM ACETATE, PH 4.2
Resolution 1.85 Å R-free 0.205
1GW7 QUASI-ATOMIC RESOLUTION MODEL OF BACTERIOPHAGE PRD1 CAPSID, OBTAINED BY COMBINED CRYO-EM AND X-RAY CRYSTALLOGRAPHY. Deposited 2002-03-08 Assembly 1 Protein homooligomer Homooligomer;Protein × 720 PDB declaration: 720-MERIC(720) Consistent with protein count
Chain A 1–394(394 aa)
Chain B 1–394(394 aa)
Chain C 1–394(394 aa)
Chain D 1–394(394 aa)
Chain E 1–394(394 aa)
Chain F 1–394(394 aa)
Chain G 1–394(394 aa)
Chain H 1–394(394 aa)
Chain I 1–394(394 aa)
Chain J 1–394(394 aa)
Chain K 1–394(394 aa)
Chain L 1–394(394 aa)
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer TRIS;pH 7.2;TRIS
cryo-EM vitrification conditions Cryogen ETHANE;ETHANE
Resolution 13.50 Å
1GW7 QUASI-ATOMIC RESOLUTION MODEL OF BACTERIOPHAGE PRD1 CAPSID, OBTAINED BY COMBINED CRYO-EM AND X-RAY CRYSTALLOGRAPHY. Deposited 2002-03-08 Assembly 2 Protein homooligomer Homooligomer;Protein × 12 PDB declaration: dodecameric(12) Consistent with protein count
Chain A 1–394(394 aa)
Chain B 1–394(394 aa)
Chain C 1–394(394 aa)
Chain D 1–394(394 aa)
Chain E 1–394(394 aa)
Chain F 1–394(394 aa)
Chain G 1–394(394 aa)
Chain H 1–394(394 aa)
Chain I 1–394(394 aa)
Chain J 1–394(394 aa)
Chain K 1–394(394 aa)
Chain L 1–394(394 aa)
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer TRIS;pH 7.2;TRIS
cryo-EM vitrification conditions Cryogen ETHANE;ETHANE
Resolution 13.50 Å
1GW7 QUASI-ATOMIC RESOLUTION MODEL OF BACTERIOPHAGE PRD1 CAPSID, OBTAINED BY COMBINED CRYO-EM AND X-RAY CRYSTALLOGRAPHY. Deposited 2002-03-08 Assembly 3 Protein homooligomer Homooligomer;Protein × 60 PDB declaration: 60-meric(60) Consistent with protein count
Chain A 1–394(394 aa)
Chain B 1–394(394 aa)
Chain C 1–394(394 aa)
Chain D 1–394(394 aa)
Chain E 1–394(394 aa)
Chain F 1–394(394 aa)
Chain G 1–394(394 aa)
Chain H 1–394(394 aa)
Chain I 1–394(394 aa)
Chain J 1–394(394 aa)
Chain K 1–394(394 aa)
Chain L 1–394(394 aa)
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer TRIS;pH 7.2;TRIS
cryo-EM vitrification conditions Cryogen ETHANE;ETHANE
Resolution 13.50 Å
1GW7 QUASI-ATOMIC RESOLUTION MODEL OF BACTERIOPHAGE PRD1 CAPSID, OBTAINED BY COMBINED CRYO-EM AND X-RAY CRYSTALLOGRAPHY. Deposited 2002-03-08 Assembly 4 Protein homooligomer Homooligomer;Protein × 72 PDB declaration: 72-meric(72) Consistent with protein count
Chain A 1–394(394 aa)
Chain B 1–394(394 aa)
Chain C 1–394(394 aa)
Chain D 1–394(394 aa)
Chain E 1–394(394 aa)
Chain F 1–394(394 aa)
Chain G 1–394(394 aa)
Chain H 1–394(394 aa)
Chain I 1–394(394 aa)
Chain J 1–394(394 aa)
Chain K 1–394(394 aa)
Chain L 1–394(394 aa)
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer TRIS;pH 7.2;TRIS
cryo-EM vitrification conditions Cryogen ETHANE;ETHANE
Resolution 13.50 Å
1GW7 QUASI-ATOMIC RESOLUTION MODEL OF BACTERIOPHAGE PRD1 CAPSID, OBTAINED BY COMBINED CRYO-EM AND X-RAY CRYSTALLOGRAPHY. Deposited 2002-03-08 Assembly 5 Protein homooligomer Homooligomer;Protein × 12 PDB declaration: dodecameric(12) Consistent with protein count
Chain A 1–394(394 aa)
Chain B 1–394(394 aa)
Chain C 1–394(394 aa)
Chain D 1–394(394 aa)
Chain E 1–394(394 aa)
Chain F 1–394(394 aa)
Chain G 1–394(394 aa)
Chain H 1–394(394 aa)
Chain I 1–394(394 aa)
Chain J 1–394(394 aa)
Chain K 1–394(394 aa)
Chain L 1–394(394 aa)
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer TRIS;pH 7.2;TRIS
cryo-EM vitrification conditions Cryogen ETHANE;ETHANE
Resolution 13.50 Å
1GW8 quasi-atomic resolution model of bacteriophage PRD1 sus607 mutant, obtained by combined cryo-EM and X-ray crystallography. Deposited 2002-03-08 Assembly 1 Protein homooligomer Homooligomer;Protein × 720 PDB declaration: 720-MERIC(720) Consistent with protein count
Chain A 1–394(394 aa)
Chain B 1–394(394 aa)
Chain C 1–394(394 aa)
Chain D 1–394(394 aa)
Chain E 1–394(394 aa)
Chain F 1–394(394 aa)
Chain G 1–394(394 aa)
Chain H 1–394(394 aa)
Chain I 1–394(394 aa)
Chain J 1–394(394 aa)
Chain K 1–394(394 aa)
Chain L 1–394(394 aa)
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer TRIS;pH 7.2;TRIS
cryo-EM vitrification conditions Cryogen ETHANE;ETHANE
Resolution 13.30 Å
1GW8 quasi-atomic resolution model of bacteriophage PRD1 sus607 mutant, obtained by combined cryo-EM and X-ray crystallography. Deposited 2002-03-08 Assembly 2 Protein homooligomer Homooligomer;Protein × 12 PDB declaration: dodecameric(12) Consistent with protein count
Chain A 1–394(394 aa)
Chain B 1–394(394 aa)
Chain C 1–394(394 aa)
Chain D 1–394(394 aa)
Chain E 1–394(394 aa)
Chain F 1–394(394 aa)
Chain G 1–394(394 aa)
Chain H 1–394(394 aa)
Chain I 1–394(394 aa)
Chain J 1–394(394 aa)
Chain K 1–394(394 aa)
Chain L 1–394(394 aa)
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer TRIS;pH 7.2;TRIS
cryo-EM vitrification conditions Cryogen ETHANE;ETHANE
Resolution 13.30 Å
1GW8 quasi-atomic resolution model of bacteriophage PRD1 sus607 mutant, obtained by combined cryo-EM and X-ray crystallography. Deposited 2002-03-08 Assembly 3 Protein homooligomer Homooligomer;Protein × 60 PDB declaration: 60-meric(60) Consistent with protein count
Chain A 1–394(394 aa)
Chain B 1–394(394 aa)
Chain C 1–394(394 aa)
Chain D 1–394(394 aa)
Chain E 1–394(394 aa)
Chain F 1–394(394 aa)
Chain G 1–394(394 aa)
Chain H 1–394(394 aa)
Chain I 1–394(394 aa)
Chain J 1–394(394 aa)
Chain K 1–394(394 aa)
Chain L 1–394(394 aa)
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer TRIS;pH 7.2;TRIS
cryo-EM vitrification conditions Cryogen ETHANE;ETHANE
Resolution 13.30 Å
1GW8 quasi-atomic resolution model of bacteriophage PRD1 sus607 mutant, obtained by combined cryo-EM and X-ray crystallography. Deposited 2002-03-08 Assembly 4 Protein homooligomer Homooligomer;Protein × 72 PDB declaration: 72-meric(72) Consistent with protein count
Chain A 1–394(394 aa)
Chain B 1–394(394 aa)
Chain C 1–394(394 aa)
Chain D 1–394(394 aa)
Chain E 1–394(394 aa)
Chain F 1–394(394 aa)
Chain G 1–394(394 aa)
Chain H 1–394(394 aa)
Chain I 1–394(394 aa)
Chain J 1–394(394 aa)
Chain K 1–394(394 aa)
Chain L 1–394(394 aa)
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer TRIS;pH 7.2;TRIS
cryo-EM vitrification conditions Cryogen ETHANE;ETHANE
Resolution 13.30 Å
1GW8 quasi-atomic resolution model of bacteriophage PRD1 sus607 mutant, obtained by combined cryo-EM and X-ray crystallography. Deposited 2002-03-08 Assembly 5 Protein homooligomer Homooligomer;Protein × 12 PDB declaration: dodecameric(12) Consistent with protein count
Chain A 1–394(394 aa)
Chain B 1–394(394 aa)
Chain C 1–394(394 aa)
Chain D 1–394(394 aa)
Chain E 1–394(394 aa)
Chain F 1–394(394 aa)
Chain G 1–394(394 aa)
Chain H 1–394(394 aa)
Chain I 1–394(394 aa)
Chain J 1–394(394 aa)
Chain K 1–394(394 aa)
Chain L 1–394(394 aa)
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer TRIS;pH 7.2;TRIS
cryo-EM vitrification conditions Cryogen ETHANE;ETHANE
Resolution 13.30 Å
1HB5 quasi-atomic resolution model of bacteriophage PRD1 P3-shell, obtained by combined cryo-EM and X-ray crystallography. Deposited 2001-04-11 Assembly 1 Protein homooligomer Homooligomer;Protein × 540 PDB declaration: 540-MERIC(540) Consistent with protein count
Chain A 1–394(394 aa)
Chain B 1–394(394 aa)
Chain C 1–394(394 aa)
Chain D 1–394(394 aa)
Chain E 1–394(394 aa)
Chain F 1–394(394 aa)
Chain G 1–394(394 aa)
Chain H 1–394(394 aa)
Chain I 1–394(394 aa)
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.2
cryo-EM vitrification conditions Cryogen ETHANE;PLUNGE VITRIFICATION
Resolution 12.00 Å
1HB5 quasi-atomic resolution model of bacteriophage PRD1 P3-shell, obtained by combined cryo-EM and X-ray crystallography. Deposited 2001-04-11 Assembly 2 Protein homooligomer Homooligomer;Protein × 9 PDB declaration: nonameric(9) Consistent with protein count
Chain A 1–394(394 aa)
Chain B 1–394(394 aa)
Chain C 1–394(394 aa)
Chain D 1–394(394 aa)
Chain E 1–394(394 aa)
Chain F 1–394(394 aa)
Chain G 1–394(394 aa)
Chain H 1–394(394 aa)
Chain I 1–394(394 aa)
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.2
cryo-EM vitrification conditions Cryogen ETHANE;PLUNGE VITRIFICATION
Resolution 12.00 Å
1HB5 quasi-atomic resolution model of bacteriophage PRD1 P3-shell, obtained by combined cryo-EM and X-ray crystallography. Deposited 2001-04-11 Assembly 3 Protein homooligomer Homooligomer;Protein × 45 PDB declaration: 45-meric(45) Consistent with protein count
Chain A 1–394(394 aa)
Chain B 1–394(394 aa)
Chain C 1–394(394 aa)
Chain D 1–394(394 aa)
Chain E 1–394(394 aa)
Chain F 1–394(394 aa)
Chain G 1–394(394 aa)
Chain H 1–394(394 aa)
Chain I 1–394(394 aa)
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.2
cryo-EM vitrification conditions Cryogen ETHANE;PLUNGE VITRIFICATION
Resolution 12.00 Å
1HB5 quasi-atomic resolution model of bacteriophage PRD1 P3-shell, obtained by combined cryo-EM and X-ray crystallography. Deposited 2001-04-11 Assembly 4 Protein homooligomer Homooligomer;Protein × 54 PDB declaration: 54-meric(54) Consistent with protein count
Chain A 1–394(394 aa)
Chain B 1–394(394 aa)
Chain C 1–394(394 aa)
Chain D 1–394(394 aa)
Chain E 1–394(394 aa)
Chain F 1–394(394 aa)
Chain G 1–394(394 aa)
Chain H 1–394(394 aa)
Chain I 1–394(394 aa)
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.2
cryo-EM vitrification conditions Cryogen ETHANE;PLUNGE VITRIFICATION
Resolution 12.00 Å
1HB5 quasi-atomic resolution model of bacteriophage PRD1 P3-shell, obtained by combined cryo-EM and X-ray crystallography. Deposited 2001-04-11 Assembly 5 Protein homooligomer Homooligomer;Protein × 9 PDB declaration: nonameric(9) Consistent with protein count
Chain A 1–394(394 aa)
Chain B 1–394(394 aa)
Chain C 1–394(394 aa)
Chain D 1–394(394 aa)
Chain E 1–394(394 aa)
Chain F 1–394(394 aa)
Chain G 1–394(394 aa)
Chain H 1–394(394 aa)
Chain I 1–394(394 aa)
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.2
cryo-EM vitrification conditions Cryogen ETHANE;PLUNGE VITRIFICATION
Resolution 12.00 Å
1HB7 quasi-atomic resolution model of bacteriophage PRD1 sus1 mutant, obtained by combined cryo-EM and X-ray crystallography. Deposited 2001-04-12 Assembly 1 Protein homooligomer Homooligomer;Protein × 720 PDB declaration: 720-MERIC(720) Consistent with protein count
Chain A 1–394(394 aa)
Chain B 1–394(394 aa)
Chain C 1–394(394 aa)
Chain D 1–394(394 aa)
Chain E 1–394(394 aa)
Chain F 1–394(394 aa)
Chain G 1–394(394 aa)
Chain H 1–394(394 aa)
Chain I 1–394(394 aa)
Chain J 1–394(394 aa)
Chain K 1–394(394 aa)
Chain L 1–394(394 aa)
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.2
cryo-EM vitrification conditions Cryogen ETHANE;PLUNGE VITRIFICATION
Resolution 14.00 Å
1HB7 quasi-atomic resolution model of bacteriophage PRD1 sus1 mutant, obtained by combined cryo-EM and X-ray crystallography. Deposited 2001-04-12 Assembly 2 Protein homooligomer Homooligomer;Protein × 12 PDB declaration: dodecameric(12) Consistent with protein count
Chain A 1–394(394 aa)
Chain B 1–394(394 aa)
Chain C 1–394(394 aa)
Chain D 1–394(394 aa)
Chain E 1–394(394 aa)
Chain F 1–394(394 aa)
Chain G 1–394(394 aa)
Chain H 1–394(394 aa)
Chain I 1–394(394 aa)
Chain J 1–394(394 aa)
Chain K 1–394(394 aa)
Chain L 1–394(394 aa)
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.2
cryo-EM vitrification conditions Cryogen ETHANE;PLUNGE VITRIFICATION
Resolution 14.00 Å
1HB7 quasi-atomic resolution model of bacteriophage PRD1 sus1 mutant, obtained by combined cryo-EM and X-ray crystallography. Deposited 2001-04-12 Assembly 3 Protein homooligomer Homooligomer;Protein × 60 PDB declaration: 60-meric(60) Consistent with protein count
Chain A 1–394(394 aa)
Chain B 1–394(394 aa)
Chain C 1–394(394 aa)
Chain D 1–394(394 aa)
Chain E 1–394(394 aa)
Chain F 1–394(394 aa)
Chain G 1–394(394 aa)
Chain H 1–394(394 aa)
Chain I 1–394(394 aa)
Chain J 1–394(394 aa)
Chain K 1–394(394 aa)
Chain L 1–394(394 aa)
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.2
cryo-EM vitrification conditions Cryogen ETHANE;PLUNGE VITRIFICATION
Resolution 14.00 Å
1HB7 quasi-atomic resolution model of bacteriophage PRD1 sus1 mutant, obtained by combined cryo-EM and X-ray crystallography. Deposited 2001-04-12 Assembly 4 Protein homooligomer Homooligomer;Protein × 72 PDB declaration: 72-meric(72) Consistent with protein count
Chain A 1–394(394 aa)
Chain B 1–394(394 aa)
Chain C 1–394(394 aa)
Chain D 1–394(394 aa)
Chain E 1–394(394 aa)
Chain F 1–394(394 aa)
Chain G 1–394(394 aa)
Chain H 1–394(394 aa)
Chain I 1–394(394 aa)
Chain J 1–394(394 aa)
Chain K 1–394(394 aa)
Chain L 1–394(394 aa)
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.2
cryo-EM vitrification conditions Cryogen ETHANE;PLUNGE VITRIFICATION
Resolution 14.00 Å
1HB7 quasi-atomic resolution model of bacteriophage PRD1 sus1 mutant, obtained by combined cryo-EM and X-ray crystallography. Deposited 2001-04-12 Assembly 5 Protein homooligomer Homooligomer;Protein × 12 PDB declaration: dodecameric(12) Consistent with protein count
Chain A 1–394(394 aa)
Chain B 1–394(394 aa)
Chain C 1–394(394 aa)
Chain D 1–394(394 aa)
Chain E 1–394(394 aa)
Chain F 1–394(394 aa)
Chain G 1–394(394 aa)
Chain H 1–394(394 aa)
Chain I 1–394(394 aa)
Chain J 1–394(394 aa)
Chain K 1–394(394 aa)
Chain L 1–394(394 aa)
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.2
cryo-EM vitrification conditions Cryogen ETHANE;PLUNGE VITRIFICATION
Resolution 14.00 Å
1HB9 quasi-atomic resolution model of bacteriophage PRD1 wild type virion, obtained by combined cryo-EM and X-ray crystallography. Deposited 2001-04-13 Assembly 1 Protein homooligomer Homooligomer;Protein × 720 PDB declaration: 720-MERIC(720) Consistent with protein count
Chain A 1–394(394 aa)
Chain B 1–394(394 aa)
Chain C 1–394(394 aa)
Chain D 1–394(394 aa)
Chain E 1–394(394 aa)
Chain F 1–394(394 aa)
Chain G 1–394(394 aa)
Chain H 1–394(394 aa)
Chain I 1–394(394 aa)
Chain J 1–394(394 aa)
Chain K 1–394(394 aa)
Chain L 1–394(394 aa)
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.2
cryo-EM vitrification conditions Cryogen ETHANE;PLUNGE VITRIFICATION
Resolution 25.00 Å
1HB9 quasi-atomic resolution model of bacteriophage PRD1 wild type virion, obtained by combined cryo-EM and X-ray crystallography. Deposited 2001-04-13 Assembly 2 Protein homooligomer Homooligomer;Protein × 12 PDB declaration: dodecameric(12) Consistent with protein count
Chain A 1–394(394 aa)
Chain B 1–394(394 aa)
Chain C 1–394(394 aa)
Chain D 1–394(394 aa)
Chain E 1–394(394 aa)
Chain F 1–394(394 aa)
Chain G 1–394(394 aa)
Chain H 1–394(394 aa)
Chain I 1–394(394 aa)
Chain J 1–394(394 aa)
Chain K 1–394(394 aa)
Chain L 1–394(394 aa)
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.2
cryo-EM vitrification conditions Cryogen ETHANE;PLUNGE VITRIFICATION
Resolution 25.00 Å
1HB9 quasi-atomic resolution model of bacteriophage PRD1 wild type virion, obtained by combined cryo-EM and X-ray crystallography. Deposited 2001-04-13 Assembly 3 Protein homooligomer Homooligomer;Protein × 60 PDB declaration: 60-meric(60) Consistent with protein count
Chain A 1–394(394 aa)
Chain B 1–394(394 aa)
Chain C 1–394(394 aa)
Chain D 1–394(394 aa)
Chain E 1–394(394 aa)
Chain F 1–394(394 aa)
Chain G 1–394(394 aa)
Chain H 1–394(394 aa)
Chain I 1–394(394 aa)
Chain J 1–394(394 aa)
Chain K 1–394(394 aa)
Chain L 1–394(394 aa)
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.2
cryo-EM vitrification conditions Cryogen ETHANE;PLUNGE VITRIFICATION
Resolution 25.00 Å
1HB9 quasi-atomic resolution model of bacteriophage PRD1 wild type virion, obtained by combined cryo-EM and X-ray crystallography. Deposited 2001-04-13 Assembly 4 Protein homooligomer Homooligomer;Protein × 72 PDB declaration: 72-meric(72) Consistent with protein count
Chain A 1–394(394 aa)
Chain B 1–394(394 aa)
Chain C 1–394(394 aa)
Chain D 1–394(394 aa)
Chain E 1–394(394 aa)
Chain F 1–394(394 aa)
Chain G 1–394(394 aa)
Chain H 1–394(394 aa)
Chain I 1–394(394 aa)
Chain J 1–394(394 aa)
Chain K 1–394(394 aa)
Chain L 1–394(394 aa)
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.2
cryo-EM vitrification conditions Cryogen ETHANE;PLUNGE VITRIFICATION
Resolution 25.00 Å
1HB9 quasi-atomic resolution model of bacteriophage PRD1 wild type virion, obtained by combined cryo-EM and X-ray crystallography. Deposited 2001-04-13 Assembly 5 Protein homooligomer Homooligomer;Protein × 12 PDB declaration: dodecameric(12) Consistent with protein count
Chain A 1–394(394 aa)
Chain B 1–394(394 aa)
Chain C 1–394(394 aa)
Chain D 1–394(394 aa)
Chain E 1–394(394 aa)
Chain F 1–394(394 aa)
Chain G 1–394(394 aa)
Chain H 1–394(394 aa)
Chain I 1–394(394 aa)
Chain J 1–394(394 aa)
Chain K 1–394(394 aa)
Chain L 1–394(394 aa)
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.2
cryo-EM vitrification conditions Cryogen ETHANE;PLUNGE VITRIFICATION
Resolution 25.00 Å
1HQN THE SELENOMETHIONINE DERIVATIVE OF P3, THE MAJOR COAT PROTEIN OF THE LIPID-CONTAINING BACTERIOPHAGE PRD1. Deposited 2000-12-18 Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count
Chain A 1–394(394 aa)
Chain B 1–394(394 aa)
Chain C 1–394(394 aa)
Non-standard monomer:Yes (specific site not provided by mmCIF) Non-standard monomer:Yes (specific site not provided by mmCIF) Non-standard monomer:Yes (specific site not provided by mmCIF) No recorded non-water small molecule X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP;pH 4.2;298 K;30% MPD, 0.2 M NACL, 0.1 M SODIUM ACETATE, pH 4.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Resolution 2.20 Å R-free 0.227
1HX6 P3, THE MAJOR COAT PROTEIN OF THE LIPID-CONTAINING BACTERIOPHAGE PRD1. Deposited 2001-01-11 Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count
Chain A 1–394(394 aa)
Chain B 1–394(394 aa)
Chain C 1–394(394 aa)
Not recorded CL CHLORIDE ION × 2 NA SODIUM ION × 7 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 18 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP;pH 4.2;298 K;30% MPD, 0.1 M sodium acetate, 0.2 M NaCl, pH 4.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Resolution 1.65 Å R-free 0.208
1W8X Structural analysis of PRD1 Deposited 2004-10-01 Assembly 1 Protein heterocomplex Heteromer;Protein × 900 PDB declaration: 900-MERIC(900) Consistent with protein count
Chain A 1–395(395 aa)
Chain B 1–395(395 aa)
Chain C 1–395(395 aa)
Chain D 1–395(395 aa)
Chain E 1–395(395 aa)
Chain F 1–395(395 aa)
Chain G 1–395(395 aa)
Chain H 1–395(395 aa)
Chain I 1–395(395 aa)
Chain J 1–395(395 aa)
Chain K 1–395(395 aa)
Chain L 1–395(395 aa)
Not recorded No recorded non-water small molecule X-RAY DIFFRACTION
X-ray crystallization conditions pH 7.2;3.7 W/V PEG 8000, 400 MM NACL 100 MM POTASSIUM PHOSPHATE BUFFER PH 7.2
Resolution 4.20 Å
1W8X Structural analysis of PRD1 Deposited 2004-10-01 Assembly 2 Protein heterocomplex Heteromer;Protein × 15 PDB declaration: pentadecameric(15) Consistent with protein count
Chain A 1–395(395 aa)
Chain B 1–395(395 aa)
Chain C 1–395(395 aa)
Chain D 1–395(395 aa)
Chain E 1–395(395 aa)
Chain F 1–395(395 aa)
Chain G 1–395(395 aa)
Chain H 1–395(395 aa)
Chain I 1–395(395 aa)
Chain J 1–395(395 aa)
Chain K 1–395(395 aa)
Chain L 1–395(395 aa)
Not recorded No recorded non-water small molecule X-RAY DIFFRACTION
X-ray crystallization conditions pH 7.2;3.7 W/V PEG 8000, 400 MM NACL 100 MM POTASSIUM PHOSPHATE BUFFER PH 7.2
Resolution 4.20 Å
1W8X Structural analysis of PRD1 Deposited 2004-10-01 Assembly 3 Protein heterocomplex Heteromer;Protein × 75 PDB declaration: 75-meric(75) Consistent with protein count
Chain A 1–395(395 aa)
Chain B 1–395(395 aa)
Chain C 1–395(395 aa)
Chain D 1–395(395 aa)
Chain E 1–395(395 aa)
Chain F 1–395(395 aa)
Chain G 1–395(395 aa)
Chain H 1–395(395 aa)
Chain I 1–395(395 aa)
Chain J 1–395(395 aa)
Chain K 1–395(395 aa)
Chain L 1–395(395 aa)
Not recorded No recorded non-water small molecule X-RAY DIFFRACTION
X-ray crystallization conditions pH 7.2;3.7 W/V PEG 8000, 400 MM NACL 100 MM POTASSIUM PHOSPHATE BUFFER PH 7.2
Resolution 4.20 Å
1W8X Structural analysis of PRD1 Deposited 2004-10-01 Assembly 4 Protein heterocomplex Heteromer;Protein × 90 PDB declaration: 90-meric(90) Consistent with protein count
Chain A 1–395(395 aa)
Chain B 1–395(395 aa)
Chain C 1–395(395 aa)
Chain D 1–395(395 aa)
Chain E 1–395(395 aa)
Chain F 1–395(395 aa)
Chain G 1–395(395 aa)
Chain H 1–395(395 aa)
Chain I 1–395(395 aa)
Chain J 1–395(395 aa)
Chain K 1–395(395 aa)
Chain L 1–395(395 aa)
Not recorded No recorded non-water small molecule X-RAY DIFFRACTION
X-ray crystallization conditions pH 7.2;3.7 W/V PEG 8000, 400 MM NACL 100 MM POTASSIUM PHOSPHATE BUFFER PH 7.2
Resolution 4.20 Å
1W8X Structural analysis of PRD1 Deposited 2004-10-01 Assembly 5 Protein heterocomplex Heteromer;Protein × 15 PDB declaration: pentadecameric(15) Consistent with protein count
Chain A 1–395(395 aa)
Chain B 1–395(395 aa)
Chain C 1–395(395 aa)
Chain D 1–395(395 aa)
Chain E 1–395(395 aa)
Chain F 1–395(395 aa)
Chain G 1–395(395 aa)
Chain H 1–395(395 aa)
Chain I 1–395(395 aa)
Chain J 1–395(395 aa)
Chain K 1–395(395 aa)
Chain L 1–395(395 aa)
Not recorded No recorded non-water small molecule X-RAY DIFFRACTION
X-ray crystallization conditions pH 7.2;3.7 W/V PEG 8000, 400 MM NACL 100 MM POTASSIUM PHOSPHATE BUFFER PH 7.2
Resolution 4.20 Å
1W8X Structural analysis of PRD1 Deposited 2004-10-01 Assembly 6 Protein heterocomplex Heteromer;Protein × 900 PDB declaration: 900-meric(900) Consistent with protein count
Chain A 1–395(395 aa)
Chain B 1–395(395 aa)
Chain C 1–395(395 aa)
Chain D 1–395(395 aa)
Chain E 1–395(395 aa)
Chain F 1–395(395 aa)
Chain G 1–395(395 aa)
Chain H 1–395(395 aa)
Chain I 1–395(395 aa)
Chain J 1–395(395 aa)
Chain K 1–395(395 aa)
Chain L 1–395(395 aa)
Not recorded No recorded non-water small molecule X-RAY DIFFRACTION
X-ray crystallization conditions pH 7.2;3.7 W/V PEG 8000, 400 MM NACL 100 MM POTASSIUM PHOSPHATE BUFFER PH 7.2
Resolution 4.20 Å
7OOK Bacteriophage PRD1 Major Capsid Protein P3 in complex with CPZ Deposited 2021-05-27 Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count
Chain A 1–395(395 aa)
Chain B 1–395(395 aa)
Chain C 1–395(395 aa)
Not recorded NA SODIUM ION × 5 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 10 Z80 3-(2-chloro-10H-phenothiazin-10-yl)-N,N-dimethylpropan-1-amine × 3 CL CHLORIDE ION × 3 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, SITTING DROP;293 K;please see: PMID: 10499799
Resolution 2.23 Å R-free 0.216