Current Protein Identity：P62894
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Difference tags compare only the current result set; every original PDB and assembly record remains separate.
Related-Structure Differences
Each row represents one biological assembly in one PDB entry; multiple monomers of the same protein are listed separately.
| PDB Entry | Assembly / Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Non-polymers | Experimental Method | Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|---|
| 2B4Z Crystal structure of cytochrome C from bovine heart at 1.5 A resolution. Deposited 2005-09-27 | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count |
Chain A
1–104（104 aa）
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
MICROSEEDING；pH 7；277 K；PEG 1000, SODIUM PHOSPHATE, pH 7.0, MICROSEEDING, temperature 277K
|
Resolution 1.50 Å R-free 0.218 |
| 2YBB Fitted model for bovine mitochondrial supercomplex I1III2IV1 by single particle cryo-EM (EMD-1876) Deposited 2011-03-02 | Assembly 1 Protein heterocomplex Heteromer；Protein × 48 PDB declaration: 48-meric（48） Consistent with protein count |
Chain Y
2–105（104 aa）
|
Not recorded | SF4 IRON/SULFUR CLUSTER × 7 FMN FLAVIN MONONUCLEOTIDE × 1 NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE × 1 MG MAGNESIUM ION × 7 FES FE2/S2 (INORGANIC) CLUSTER × 4 CA CALCIUM ION × 1 HEM PROTOPORPHYRIN IX CONTAINING FE × 5 SMA STIGMATELLIN A × 2 UQ1 UBIQUINONE-1 × 2 HEC HEME C × 2 CDL CARDIOLIPIN × 4 HEA HEME-A × 2 CU COPPER (II) ION × 3 ZN ZINC ION × 1 | ELECTRON MICROSCOPY |
cryo-EM buffer
10 MM KCL, 15 MM HEPES, RESIDUAL TREHALOSE；pH 7.7；10 MM KCL, 15 MM HEPES, RESIDUAL TREHALOSE
cryo-EM vitrification conditions
Cryogen ETHANE；VITRIFICATION 1 -- CRYOGEN- ETHANE, HUMIDITY- 70, TEMPERATURE- 95, INSTRUMENT- CUSTOM-MADE HAND PLUNGER, METHOD- ONE- SIDED BLOTTING FOR 26 - 30 SECONDS BEFORE PLUNGING, DETAILS- SAMPLE WAS ADSORBED TO CARBON FILM FOR 30 SECONDS BEFORE BLOTTING
|
Resolution 19.00 Å |
| 3J2T An improved model of the human apoptosome Deposited 2012-12-23 | Assembly 1 Protein heterocomplex Heteromer；Protein × 14 PDB declaration: tetradecameric（14） Consistent with protein count |
Chain H
2–105（104 aa）
Chain I
2–105（104 aa）
Chain J
2–105（104 aa）
Chain K
2–105（104 aa）
Chain L
2–105（104 aa）
Chain M
2–105（104 aa）
Chain N
2–105（104 aa）
|
Not recorded | ATP ADENOSINE-5'-TRIPHOSPHATE × 7 HEM PROTOPORPHYRIN IX CONTAINING FE × 7 | ELECTRON MICROSCOPY |
cryo-EM buffer
low salt HEPES buffer；pH 7.5；20mM HEPES, 10mM KCl, 1.5mM MgCl2, 1mM EDTA, 1mM EGTA, 1mM DTT
cryo-EM vitrification conditions
Blot for 2 seconds before plunging；77 K；Cryogen ETHANE；Blot for 2 seconds before plunging (FEI VITROBOT MARK III)
|
Resolution 9.50 Å |
| 5JUY Active human apoptosome with procaspase-9 Deposited 2016-05-10 | Assembly 1 Protein heterocomplex Heteromer；Protein × 18 PDB declaration: octadecameric（18） Consistent with protein count |
Chain H
2–105（104 aa）
Chain I
2–105（104 aa）
Chain J
2–105（104 aa）
Chain K
2–105（104 aa）
Chain L
2–105（104 aa）
Chain M
2–105（104 aa）
Chain N
2–105（104 aa）
|
Not recorded | DTP 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE × 7 HEC HEME C × 7 | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 7.5；Buffer A
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.10 Å |
| 6FF5 X-ray structure of bovine heart cytochrome c at high ionic strength Deposited 2018-01-03 | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count |
Chain A
2–105（104 aa）
|
Not recorded | HEC HEME C × 1 NO3 NITRATE ION × 5 SO4 SULFATE ION × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；3.2-3.4 M ammonium sulfate and 0.4-0.5 M NaNO3
|
Resolution 1.74 Å R-free 0.203 |