← Back to search

Protein Structures and Oligomeric States

Enter a protein name, UniProt accession or PDB ID. Name searches ask you to confirm the protein identity before related structures are queried.

Current Protein Identity：P80379 New Search
11PDB entries
11Biological assembly
12chain/assembly records
Main Difference Dimensions in This Set
Different construct Different mutation/modification Different assembly state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics

Difference tags compare only the current result set; every original PDB and assembly record remains separate.

Related-Structure Differences

Each row represents one biological assembly in one PDB entry; multiple monomers of the same protein are listed separately.

PDB Entry Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Experimental Method Experimental Conditions Structure Quality
1EMW SOLUTION STRUCTURE OF THE RIBOSOMAL PROTEIN S16 FROM THERMUS THERMOPHILUS Deposited 2000-03-20 Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain A 1–67（67 aa）
Not recorded No recorded non-water small molecule SOLUTION NMR
NMR measurement conditions pH 6；303 K；Ionic strength (raw mmCIF value) 0.2 M LiCl；Pressure ambient
NMR sample composition S16; U-15N,13C; 50mM phosphate buffer; 200 mM LiCl | 90% H2O/10% D2O
NMR sample composition 1.2 mM S16; U-15N; 50mM phosphate buffer; 200 mM LiCl | 90% H2O/10% D2O
NMR sample composition 1.6 mM S16; 50mM phosphate buffer; 200 mM LiCl | 90% H2O/10% D2O
Resolution not provided
1J5E Structure of the Thermus thermophilus 30S Ribosomal Subunit Deposited 2002-04-08 Assembly 1 Protein–RNA Heteromer；Protein × 20 PDB declaration: 21-meric（21） Consistent with all polymers
Chain P 1–88（88 aa）
Not recorded UNX UNKNOWN LIGAND × 188 ZN ZINC ION × 2 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 6.5；277 K；MPD, NH4Cl, KCl, CaCl2, magnesium acetate, sodium cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP at 277K
Resolution 3.05 Å R-free 0.252
1N32 Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position at the a site with paromomycin Deposited 2002-10-25 Assembly 1 Protein–RNA Heteromer；Protein × 20 PDB declaration: 23-meric（23） Consistent with all polymers
Chain P 1–88（88 aa）
Not recorded PAR PAROMOMYCIN × 1 MG MAGNESIUM ION × 158 ZN ZINC ION × 2 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 6.5；277 K；MPD, NH4Cl, KCl, CaCl2, magnesium acetate, potassium-MES, sodium cacodylate, PH 6.5, VAPOR DIFFUSION, HANGING DROP AT 277K
Resolution 3.00 Å R-free 0.270
1N33 Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin Deposited 2002-10-25 Assembly 1 Protein–RNA Heteromer；Protein × 20 PDB declaration: 23-meric（23） Consistent with all polymers
Chain P 1–88（88 aa）
Not recorded PAR PAROMOMYCIN × 1 MG MAGNESIUM ION × 106 ZN ZINC ION × 2 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 6.5；277 K；MPD, NH4Cl, KCl, CaCl2, magnesium acetate, potassium-MES, sodium cacodylate, PH 6.5, VAPOR DIFFUSION, HANGING DROP AT 277K
Resolution 3.35 Å R-free 0.284
1XMO Crystal Structure of mnm5U34t6A37-tRNALysUUU Complexed with AAG-mRNA in the Decoding Center Deposited 2004-10-04 Assembly 1 Protein–RNA Heteromer；Protein × 20 PDB declaration: 23-meric（23） Consistent with all polymers
Chain P 1–88（88 aa）
Not recorded PAR PAROMOMYCIN × 1 MG MAGNESIUM ION × 107 ZN ZINC ION × 2 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 6.5；277 K；MPD, magnesium chloride, potassium chloride, ammonium chloride, MES-KOH, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277.K
Resolution 3.25 Å R-free 0.284
1XMQ Crystal Structure of t6A37-ASLLysUUU AAA-mRNA Bound to the Decoding Center Deposited 2004-10-04 Assembly 1 Protein–RNA Heteromer；Protein × 20 PDB declaration: 23-meric（23） Consistent with all polymers
Chain P 1–88（88 aa）
Not recorded PAR PAROMOMYCIN × 1 MG MAGNESIUM ION × 107 ZN ZINC ION × 2 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 6.5；277 K；MPD, magnesium chloride, potassium chloride, ammonium chloride, MES-KOH, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277.K
Resolution 3.00 Å R-free 0.236
1XNQ Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center Deposited 2004-10-05 Assembly 1 Protein–RNA Heteromer；Protein × 20 PDB declaration: 23-meric（23） Consistent with all polymers
Chain P 1–88（88 aa）
Not recorded PAR PAROMOMYCIN × 1 MG MAGNESIUM ION × 107 ZN ZINC ION × 2 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 6.5；277 K；MPD, magnesium chloride, potassium chloride, ammonium chloride, MES-KOH, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277.K
Resolution 3.05 Å R-free 0.270
1XNR Crystal Structure of an Inosine-Cytosine Wobble Base Pair in the Context of the Decoding Center Deposited 2004-10-05 Assembly 1 Protein–RNA Heteromer；Protein × 20 PDB declaration: 23-meric（23） Consistent with all polymers
Chain P 1–88（88 aa）
Not recorded PAR PAROMOMYCIN × 1 MG MAGNESIUM ION × 108 ZN ZINC ION × 2 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 6.5；277 K；MPD, magnesium chloride, potassium chloride, ammonium chloride, MES-KOH, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277.K
Resolution 3.10 Å R-free 0.273
3OTO Crystal Structure of the 30S ribosomal subunit from a KsgA mutant of Thermus thermophilus (HB8) Deposited 2010-09-13 Assembly 1 Protein–RNA Heteromer；Protein × 20 PDB declaration: 21-meric（21） Consistent with all polymers
Chain P 1–88（88 aa）
Not recorded MG MAGNESIUM ION × 94 K POTASSIUM ION × 42 ZN ZINC ION × 2 X-RAY DIFFRACTION
X-ray crystallization conditions hanging drop；pH 6.5；277 K；pH 6.5, hanging drop, temperature 277K
Resolution 3.69 Å R-free 0.231
4AQY Structure of ribosome-apramycin complexes Deposited 2012-04-20 Assembly 1 Protein–RNA Heteromer；Protein × 20 PDB declaration: 23-meric（23） Consistent with all polymers
Chain P 1–88（88 aa）
Not recorded MG MAGNESIUM ION × 203 K POTASSIUM ION × 15 AM2 APRAMYCIN × 5 ZN ZINC ION × 2 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；277 K；MPD, NH4CL, KCL, CACL2, MAGNESIUM ACETATE, SODIUM CACODYLATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP AT 277K
Resolution 3.50 Å R-free 0.235
4V5L The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog Deposited 2010-09-02 Assembly 1 Protein–RNA Heteromer；Protein × 52 PDB declaration: 59-meric（59） Consistent with all polymers
Chain AP 1–17（17 aa） Fragment：RESIDUES 1-17 AND 21-91
Chain AP 21–91（71 aa） Fragment：RESIDUES 1-17 AND 21-91
Not recorded PAR PAROMOMYCIN × 1 ZN ZINC ION × 4 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 MG MAGNESIUM ION × 1 X-RAY DIFFRACTION
X-ray crystallization conditions pH 6.3；100 MM MES PH 6.3, 60-100 MM KCL, 50 MM SUCROSE, 1% GLYCEROL, AND 5.3% (W/V) PEG20K
Resolution 3.10 Å R-free 0.268

This page presents structural evidence recorded in PDB/mmCIF.“No recorded non-water small molecule” does not prove that the experimental sample was ligand-free; experimental conditions belong to the PDB experiment, while ligands and copy counts are shown for each biological assembly.