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Structure of the Thermus thermophilus 30S Ribosomal Subunit

Method: X-RAY DIFFRACTION

SAXS 散射曲线 SAXS Profile

暂无 SAXS 图

P(r) 距离分布 P(r) Distribution

暂无 P(r) 图
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1. 结构基本信息 1. Structure Basics

条目编号 entry_id1j5e
沉积日期 deposition_date2002-04-08
结构标题 titleStructure of the Thermus thermophilus 30S Ribosomal Subunit
关键词 keywords30S RIBOSOMAL SUBUNIT, RIBOSOME; RIBOSOME
实验方法 methodX-RAY DIFFRACTION
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2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

该条目暂无 SAXS 数据。

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3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

该条目暂无 P(r) 分析数据。

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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合体信息 (23)

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6. 折叠分类 (SCOP + CATH) 47 domains

SCOP 2.08 (22 domains)

结构域编号 domain_idd1j5eb_
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.23 — Flavodoxin-like
超家族 Superfamily superfamilyc.23.15 — Ribosomal protein S2
家族 Family familyc.23.15.1 — Ribosomal protein S2
结构域编号 domain_idd1j5ec1
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.52 — Alpha-lytic protease prodomain-like
超家族 Superfamily superfamilyd.52.3 — Prokaryotic type KH domain (KH-domain type II)
家族 Family familyd.52.3.1 — Prokaryotic type KH domain (KH-domain type II)
结构域编号 domain_idd1j5ec2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.53 — Ribosomal protein S3 C-terminal domain
超家族 Superfamily superfamilyd.53.1 — Ribosomal protein S3 C-terminal domain
家族 Family familyd.53.1.1 — Ribosomal protein S3 C-terminal domain
结构域编号 domain_idd1j5ed_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.66 — Alpha-L RNA-binding motif
超家族 Superfamily superfamilyd.66.1 — Alpha-L RNA-binding motif
家族 Family familyd.66.1.2 — Ribosomal protein S4 (bacteria)
结构域编号 domain_idd1j5ee1
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.14 — Ribosomal protein S5 domain 2-like
超家族 Superfamily superfamilyd.14.1 — Ribosomal protein S5 domain 2-like
家族 Family familyd.14.1.1 — Translational machinery components
结构域编号 domain_idd1j5ee2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.50 — dsRBD-like
超家族 Superfamily superfamilyd.50.1 — dsRNA-binding domain-like
家族 Family familyd.50.1.2 — Ribosomal S5 protein, N-terminal domain
结构域编号 domain_idd1j5ef_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.58 — Ferredoxin-like
超家族 Superfamily superfamilyd.58.14 — Ribosomal protein S6
家族 Family familyd.58.14.1 — Ribosomal protein S6
结构域编号 domain_idd1j5eg_
类 Class classa — All alpha proteins
折叠类型 Fold folda.75 — Ribosomal protein S7
超家族 Superfamily superfamilya.75.1 — Ribosomal protein S7
家族 Family familya.75.1.1 — Ribosomal protein S7
结构域编号 domain_idd1j5eh_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.140 — Ribosomal protein S8
超家族 Superfamily superfamilyd.140.1 — Ribosomal protein S8
家族 Family familyd.140.1.1 — Ribosomal protein S8
结构域编号 domain_idd1j5ei_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.14 — Ribosomal protein S5 domain 2-like
超家族 Superfamily superfamilyd.14.1 — Ribosomal protein S5 domain 2-like
家族 Family familyd.14.1.1 — Translational machinery components
结构域编号 domain_idd1j5ej_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.58 — Ferredoxin-like
超家族 Superfamily superfamilyd.58.15 — Ribosomal protein S10
家族 Family familyd.58.15.1 — Ribosomal protein S10
结构域编号 domain_idd1j5ek_
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.55 — Ribonuclease H-like motif
超家族 Superfamily superfamilyc.55.4 — Translational machinery components
家族 Family familyc.55.4.1 — Ribosomal protein L18 and S11
结构域编号 domain_idd1j5el_
类 Class classb — All beta proteins
折叠类型 Fold foldb.40 — OB-fold
超家族 Superfamily superfamilyb.40.4 — Nucleic acid-binding proteins
家族 Family familyb.40.4.5 — Cold shock DNA-binding domain-like
结构域编号 domain_idd1j5em_
类 Class classa — All alpha proteins
折叠类型 Fold folda.156 — S13-like H2TH domain
超家族 Superfamily superfamilya.156.1 — S13-like H2TH domain
家族 Family familya.156.1.1 — Ribosomal protein S13
结构域编号 domain_idd1j5en_
类 Class classg — Small proteins
折叠类型 Fold foldg.39 — Glucocorticoid receptor-like (DNA-binding domain)
超家族 Superfamily superfamilyg.39.1 — Glucocorticoid receptor-like (DNA-binding domain)
家族 Family familyg.39.1.7 — Ribosomal protein S14
结构域编号 domain_idd1j5eo_
类 Class classa — All alpha proteins
折叠类型 Fold folda.16 — S15/NS1 RNA-binding domain
超家族 Superfamily superfamilya.16.1 — S15/NS1 RNA-binding domain
家族 Family familya.16.1.2 — Ribosomal protein S15
结构域编号 domain_idd1j5ep_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.27 — Ribosomal protein S16
超家族 Superfamily superfamilyd.27.1 — Ribosomal protein S16
家族 Family familyd.27.1.1 — Ribosomal protein S16
结构域编号 domain_idd1j5eq_
类 Class classb — All beta proteins
折叠类型 Fold foldb.40 — OB-fold
超家族 Superfamily superfamilyb.40.4 — Nucleic acid-binding proteins
家族 Family familyb.40.4.5 — Cold shock DNA-binding domain-like
结构域编号 domain_idd1j5er_
类 Class classa — All alpha proteins
折叠类型 Fold folda.4 — DNA/RNA-binding 3-helical bundle
超家族 Superfamily superfamilya.4.8 — Ribosomal protein S18
家族 Family familya.4.8.1 — Ribosomal protein S18
结构域编号 domain_idd1j5es_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.28 — Ribosomal protein S19
超家族 Superfamily superfamilyd.28.1 — Ribosomal protein S19
家族 Family familyd.28.1.1 — Ribosomal protein S19
结构域编号 domain_idd1j5et_
类 Class classa — All alpha proteins
折叠类型 Fold folda.7 — Spectrin repeat-like
超家族 Superfamily superfamilya.7.6 — Ribosomal protein S20
家族 Family familya.7.6.1 — Ribosomal protein S20
结构域编号 domain_idd1j5ev_
类 Class classj — Peptides
折叠类型 Fold foldj.9 — Arg-rich RNA binding peptides
超家族 Superfamily superfamilyj.9.1 — 30S ribosomal protein THX
家族 Family familyj.9.1.1 — 30S ribosomal protein THX

CATH v4.4 (25 domains)

结构域编号 domain_id1j5eB01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily10490 — Glucose-6-phosphate isomerase like protein; domain 1
结构域编号 domain_id1j5eB02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology287 — Helix Hairpins
同源超家族 H-superfamily homologous superfamily610 — Helix hairpin bin
结构域编号 domain_id1j5eC01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology300 — GMP Synthetase; Chain A, domain 3
同源超家族 H-superfamily homologous superfamily20 — K homology (KH) domain
结构域编号 domain_id1j5eC02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology1140 — Ribosomal protein S3 C-terminal domain
同源超家族 H-superfamily homologous superfamily32 — Ribosomal protein S3, C-terminal domain
结构域编号 domain_id1j5eD01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology1050 — Ribosomal Protein S4 Delta 41; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — Ribosomal protein S4/S9, N-terminal domain
结构域编号 domain_id1j5eD02
类 Class class3 — Alpha Beta
架构 Architecture architecture10 — Roll
拓扑 Topology topology290 — Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A
同源超家族 H-superfamily homologous superfamily10 — RNA-binding S4 domain
结构域编号 domain_id1j5eE01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology160 — Double Stranded RNA Binding Domain
同源超家族 H-superfamily homologous superfamily20 —
结构域编号 domain_id1j5eE02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology230 — Ribosomal Protein S5; domain 2
同源超家族 H-superfamily homologous superfamily10 —
结构域编号 domain_id1j5eF00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily60 — Ribosomal protein S6/Translation elongation factor EF1B
结构域编号 domain_id1j5eG00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology455 — Ribosomal Protein S7
同源超家族 H-superfamily homologous superfamily10 — Ribosomal protein S7/S5
结构域编号 domain_id1j5eH01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology1370 — Ribosomal Protein S8; Chain: A, domain 1
同源超家族 H-superfamily homologous superfamily30 —
结构域编号 domain_id1j5eH02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology1490 — Dna Ligase; domain 1
同源超家族 H-superfamily homologous superfamily10 —
结构域编号 domain_id1j5eI00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology230 — Ribosomal Protein S5; domain 2
同源超家族 H-superfamily homologous superfamily10 —
结构域编号 domain_id1j5eJ00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily600 — Ribosomal protein S10
结构域编号 domain_id1j5eK00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology420 — Nucleotidyltransferase; domain 5
同源超家族 H-superfamily homologous superfamily80 — Ribosomal protein S11/S14
结构域编号 domain_id1j5eL00
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology50 — OB fold (Dihydrolipoamide Acetyltransferase, E2P)
同源超家族 H-superfamily homologous superfamily140 — Nucleic acid-binding proteins
结构域编号 domain_id1j5eM01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology8 — Helicase, Ruva Protein; domain 3
同源超家族 H-superfamily homologous superfamily50 —
结构域编号 domain_id1j5eM02
类 Class class4 — Few Secondary Structures
架构 Architecture architecture10 — Irregular
拓扑 Topology topology910 — 30s ribosomal protein s13; domain 2
同源超家族 H-superfamily homologous superfamily10 — Ribosomal protein S13/S18, C-terminal domain
结构域编号 domain_id1j5eN00
类 Class class4 — Few Secondary Structures
架构 Architecture architecture10 — Irregular
拓扑 Topology topology830 — 30s Ribosomal Protein S14; Chain N
同源超家族 H-superfamily homologous superfamily10 — Ribosomal Protein S14/S29
结构域编号 domain_id1j5eO00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology287 — Helix Hairpins
同源超家族 H-superfamily homologous superfamily10 — S15/NS1, RNA-binding
结构域编号 domain_id1j5eP00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology1320 — S16 Ribosomal Protein; Chain: A;
同源超家族 H-superfamily homologous superfamily10 — Ribosomal protein S16
结构域编号 domain_id1j5eQ00
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology50 — OB fold (Dihydrolipoamide Acetyltransferase, E2P)
同源超家族 H-superfamily homologous superfamily140 — Nucleic acid-binding proteins
结构域编号 domain_id1j5eR00
类 Class class4 — Few Secondary Structures
架构 Architecture architecture10 — Irregular
拓扑 Topology topology640 — 30s Ribosomal Protein S18
同源超家族 H-superfamily homologous superfamily10 — Ribosomal protein S18
结构域编号 domain_id1j5eS00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology860 — 30s Ribosomal Protein S19; Chain A
同源超家族 H-superfamily homologous superfamily10 — Ribosomal protein S19/S15
结构域编号 domain_id1j5eT00
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology58 — Methane Monooxygenase Hydroxylase; Chain G, domain 1
同源超家族 H-superfamily homologous superfamily110 — Ribosomal protein S20
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