1fjg

;STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTICS STREPTOMYCIN, SPECTINOMYCIN, AND PAROMOMYCIN ;

Method: X-RAY DIFFRACTION D_max: 234.1 Å Quality: GOOD

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

下载 Download SAXS (.dat) P(r) (.pr.out) CIF

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1. 结构基本信息 1. Structure Basics

条目编号 entry_id	1fjg
沉积日期 deposition_date	2000-08-08
结构标题 title	;STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTICS STREPTOMYCIN, SPECTINOMYCIN, AND PAROMOMYCIN ;
关键词 keywords	30S RIBOSOMAL SUBUNIT, RIBOSOME, ANTIBIOTIC, STREPTOMYCIN, SPECTINOMYCIN, PAROMOMYCIN; RIBOSOME
实验方法 method	X-RAY DIFFRACTION

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2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier	65.88 Å
回转半径 Rg (电子) rg_electron	66.36 Å
零角强度 I(0) i0	18447500000.00
分子量 molecular_weight	770490.0 kDa
排除体积 excluded_volume	807100 Å³
包络体积 envelope_volume	1288800 Å³
水化壳体积 shell_volume	160110 Å³
包络直径 envelope_diameter	242.5 Å
壳层 Rg shell_rg	67.58 Å
包络 Rg envelope_rg	65.57 Å
形状 Rg shape_rg	66.35 Å
总 Rg total_rg	66.39 Å
总原子数 total_atoms	51995
残基数 n_residues	3917
球谐函数阶数 n_harmonics	20
q 范围 q_range	— – 0.5000 Å⁻¹
数据点数 n_points	101
壳层类型 shell_type	directional
溶剂电子密度 solvent_density	0.3340 e/Å³
壳层衬度 contrast_shell	0.0300 e/Å³
CRYSOL 版本 crysol_version	4.1.3

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3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax	234.1 Å
Rg (实空间) rg_real	66.10 Å
Rg 误差 (实空间) rg_real_error	2.18 Å
I(0) (实空间) i0_real	1.8450e+10
I(0) 误差 (实空间) i0_real_error	3.6590e+08
Rg (倒空间) rg_reciprocal	65.66 Å
I(0) (倒空间) i0_reciprocal	18430000000.0000
解质量估计 total_estimate	0.8470
解质量评级 solution_quality	GOOD a GOOD solution
P(r) 峰数 n_peaks	1
主峰位置 r_peak_primary	68.3 Å
偏度 Skewness skewness	0.425
峰度 Kurtosis kurtosis	-0.297
角度范围 angular_range	— – 0.1200 Å⁻¹
当前正则化参数 α current_alpha	0.0005
最高正则化参数 α highest_alpha	1248000000.0000
实空间数据点数 n_real_points	25
GNOM 版本 gnom_version	4.1.3
质量判据 quality_criteria	AN1: 0.000; Oscil: 0.773; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.999; Smooth: 0.689

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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合体信息 (27)

Entity 1 polymer

描述 description	16S RIBOSOMAL RNA
分子量 formula_weight	493958.3 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polyribonucleotide
链编号 strand_id	A
原子数 atom_count	51995

UUUGUUGGAGAGUUUGAUCCUGGCUCAGGGUGAACGCUGGCGGCGUGCCUAAGACAUGCAAGUCGUGCGGGCCGCGGGGUUUUACUCCGUGGUCAGCGGCGGACGGGUGAGUAACGCGUGGGUGACCUACCCGGAAGAGGGGGACAACCCGGGGAAACUCGGGCUAAUCCCCCAUGUGGACCCGCCCCUUGGGGUGUGUCCAAAGGGCUUUGCCCGCUUCCGGAUGGGCCCGCGUCCCAUCAGCUAGUUGGUGGGGUAAUGGCCCACCAAGGCGACGACGGGUAGCCGGUCUGAGAGGAUGGCCGGCCACAGGGGCACUGAGACACGGGCCCCACUCCUACGGGAGGCAGCAGUUAGGAAUCUUCCGCAAUGGGCGCAAGCCUGACGGAGCGACGCCGCUUGGAGGAAGAAGCCCUUCGGGGUGUAAACUCCUGAACCCGGGACGAAACCCCCGACGAGGGGACUGACGGUACCGGGGUAAUAGCGCCGGCCAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGCGCGAGCGUUACCCGGAUUCACUGGGCGUAAAGGGCGUGUAGGCGGCCUGGGGCGUCCCAUGUGAAAGACCACGGCUCAACCGUGGGGGAGCGUGGGAUACGCUCAGGCUAGACGGUGGGAGAGGGUGGUGGAAUUCCCGGAGUAGCGGUGAAAUGCGCAGAUACCGGGAGGAACGCCGAUGGCGAAGGCAGCCACCUGGUCCACCCGUGACGCUGAGGCGCGAAAGCGUGGGGAGCAAACCGGAUUAGAUACCCGGGUAGUCCACGCCCUAAACGAUGCGCGCUAGGUCUCUGGGUCUCCUGGGGGCCGAAGCUAACGCGUUAAGCGCGCCGCCUGGGGAGUACGGCCGCAAGGCUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGAAGAACCUUACCAGGCCUUGACAUGCUAGGGAACCCGGGUGAAAGCCUGGGGUGCCCCGCGAGGGGAGCCCUAGCACAGGUGCUGCAUGGCCGUCGUCAGCUCGUGCCGUGAGGUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCCCGCCGUUAGUUGCCAGCGGUUCGGCCGGGCACUCUAACGGGACUGCCCGCGAAAGCGGGAGGAAGGAGGGGACGACGUCUGGUCAGCAUGGCCCUUACGGCCUGGGCGACACACGUGCUACAAUGCCCACUACAAAGCGAUGCCACCCGGCAACGGGGAGCUAAUCGCAAAAAGGUGGGCCCAGUUCGGAUUGGGGUCUGCAACCCGACCCCAUGAAGCCGGAAUCGCUAGUAAUCGCGGAUCAGCCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACGCCAUGGGAGCGGGCUCUACCCGAAGUCGCCGGGAGCCUACGGGCAGGCGCCGAGGGUAGGGCCCGUGACUGGGGCGAAGUCGUAACAAGGUAGCUGUACCGGAAGGUGCGGCUGGAUCACCUCCUUUCU

Entity 2 polymer

描述 description	FRAGMENT OF MESSENGER RNA
分子量 formula_weight	1791.1 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polyribonucleotide
链编号 strand_id	X

UUUUCU

Entity 3 polymer

描述 description	30S RIBOSOMAL PROTEIN S2
分子量 formula_weight	29317.7 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	B

MPVEITVKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGTILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVVEPSPSYALVQEAEATETPEGESEVEA

Entity 4 polymer

描述 description	30S RIBOSOMAL PROTEIN S3
分子量 formula_weight	26751.1 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	C

MGNKIHPIGFRLGITRDWESRWYAGKKQYRHLLLEDQRIRGLLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGGERIRVLREELAKLTGKNVALNVQEVQNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGAKGAKVIVSGRIGGAEQARTEWAAQGRVPLHTLRANIDYGFALARTTYGVLGVKAYIFLGEVIGGQKPKARPELPKAEERPRRRRPAVRVKKEE

Entity 5 polymer

描述 description	30S RIBOSOMAL PROTEIN S4
分子量 formula_weight	24373.4 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	D

MGRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVQENLVIEFYSR

Entity 6 polymer

描述 description	30S RIBOSOMAL PROTEIN S5
分子量 formula_weight	17583.4 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	E

MPETDFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRNMVEVPLQNGTIPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELGSRNPINIAYATMEALRQLRTKADVERLRKGEAHAQAQG

Entity 7 polymer

描述 description	30S RIBOSOMAL PROTEIN S6
分子量 formula_weight	11988.8 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	F

MRRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVEELGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLARELRIRDNVRRVMVVKSQEPFLANA

Entity 8 polymer

描述 description	30S RIBOSOMAL PROTEIN S7
分子量 formula_weight	18051.0 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	G

MARRRRAEVRQLQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIAHELMDAAEGKGGAVKKKEDVERMAEANRAYAHYRW

Entity 9 polymer

描述 description	30S RIBOSOMAL PROTEIN S8
分子量 formula_weight	15868.6 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	H

MLTDPIADMLTRIRNATRVYKESTDVPASRFKEEILRILAREGFIKGYERVDVDGKPYLRVYLKYGPRRQGPDPRPEQVIHHIRRISKPGRRVYVGVKEIPRVRRGLGIAILSTSKGVLTDREARKLGVGGELICEVW

Entity 10 polymer

描述 description	30S RIBOSOMAL PROTEIN S9
分子量 formula_weight	14429.7 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	I

MEQYYGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFDAYITVRGGGKSGQIDAIKLGIARALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSKR

Entity 11 polymer

描述 description	30S RIBOSOMAL PROTEIN S10
分子量 formula_weight	11955.0 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	J

MPKIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPTRVRRFTVIRGPFKHKDSREHFELRTHNRLVDIINPNRKTIEQLMTLDLPTGVEIEIKTVGGGR

Entity 12 polymer

描述 description	30S RIBOSOMAL PROTEIN S11
分子量 formula_weight	13737.9 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	K

MAKKPSKKKVKRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTGAGREQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFRKAS

Entity 13 polymer

描述 description	30S RIBOSOMAL PROTEIN S12
分子量 formula_weight	14920.8 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	L

MVALPTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGTKKPKEAAKTAAKK

Entity 14 polymer

描述 description	30S RIBOSOMAL PROTEIN S13
分子量 formula_weight	14338.9 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	M

MARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVENTWKLEGELRAEVAANIKRLMDIGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKTVAGKKKAPRK

Entity 15 polymer

描述 description	30S RIBOSOMAL PROTEIN S14
分子量 formula_weight	7158.7 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	N

MARKALIEKAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW

Entity 16 polymer

描述 description	30S RIBOSOMAL PROTEIN S15
分子量 formula_weight	10578.4 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	O

MPITKEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLLRYLQREDPERYRALIEKLGIRG

Entity 17 polymer

描述 description	30S RIBOSOMAL PROTEIN S16
分子量 formula_weight	10410.0 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	P

MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTTPDWLKVDVERARYWLSVGAQPTDTARRLLRQAGVFRQEAREGA

Entity 18 polymer

描述 description	30S RIBOSOMAL PROTEIN S17
分子量 formula_weight	12324.7 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	Q

MPKKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESRPISKRKRFRVLRLVESGRMDLVEKYLIRRQNYQSLSKRGGKA

Entity 19 polymer

描述 description	30S RIBOSOMAL PROTEIN S18
分子量 formula_weight	10244.3 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	R

MSTKNAKPKKEAQRRPSRKAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGLSGKEQRILAKTIKRARILGLLPFTEKLVRK

Entity 20 polymer

描述 description	30S RIBOSOMAL PROTEIN S19
分子量 formula_weight	10605.5 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	S

MPRSLKKGVFVDDHLLEKVLELNAKGEKRLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAPTRTYRGHGKEAKATKKK

Entity 21 polymer

描述 description	30S RIBOSOMAL PROTEIN S20
分子量 formula_weight	11722.1 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	T

MAQKKPKRNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKAVQLAQEGKAEEALKIMRKAESLIDKAAKGSTLHKNAAARRKSRLMRKVRQLLEAAGAPLIGGGLSA

Entity 22 polymer

描述 description	30S RIBOSOMAL PROTEIN THX
分子量 formula_weight	3218.8 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	V

GKGDRRTRRGKIWRGTYGKYRPRKKK

Entity 23 non-polymer

描述 description	PAROMOMYCIN
分子量 formula_weight	615.6 kDa
来源方法 src_method	syn
拷贝数 entity_count	1

Entity 24 non-polymer

描述 description	MAGNESIUM ION
分子量 formula_weight	24.3 kDa
来源方法 src_method	syn
拷贝数 entity_count	96

Entity 25 non-polymer

描述 description	SPECTINOMYCIN
分子量 formula_weight	332.4 kDa
来源方法 src_method	syn
拷贝数 entity_count	1

Entity 26 non-polymer

描述 description	STREPTOMYCIN
分子量 formula_weight	581.6 kDa
来源方法 src_method	syn
拷贝数 entity_count	1

Entity 27 non-polymer

描述 description	ZINC ION
分子量 formula_weight	65.4 kDa
来源方法 src_method	syn
拷贝数 entity_count	2

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6. 折叠分类 (SCOP + CATH) 47 domains

SCOP 2.08 (22 domains)

结构域编号 domain_id	d1fjgb_
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.23 — Flavodoxin-like
超家族 Superfamily superfamily	c.23.15 — Ribosomal protein S2
家族 Family family	c.23.15.1 — Ribosomal protein S2

结构域编号 domain_id	d1fjgc1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.52 — Alpha-lytic protease prodomain-like
超家族 Superfamily superfamily	d.52.3 — Prokaryotic type KH domain (KH-domain type II)
家族 Family family	d.52.3.1 — Prokaryotic type KH domain (KH-domain type II)

结构域编号 domain_id	d1fjgc2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.53 — Ribosomal protein S3 C-terminal domain
超家族 Superfamily superfamily	d.53.1 — Ribosomal protein S3 C-terminal domain
家族 Family family	d.53.1.1 — Ribosomal protein S3 C-terminal domain

结构域编号 domain_id	d1fjgd_
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.66 — Alpha-L RNA-binding motif
超家族 Superfamily superfamily	d.66.1 — Alpha-L RNA-binding motif
家族 Family family	d.66.1.2 — Ribosomal protein S4 (bacteria)

结构域编号 domain_id	d1fjge1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.14 — Ribosomal protein S5 domain 2-like
超家族 Superfamily superfamily	d.14.1 — Ribosomal protein S5 domain 2-like
家族 Family family	d.14.1.1 — Translational machinery components

结构域编号 domain_id	d1fjge2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.50 — dsRBD-like
超家族 Superfamily superfamily	d.50.1 — dsRNA-binding domain-like
家族 Family family	d.50.1.2 — Ribosomal S5 protein, N-terminal domain

结构域编号 domain_id	d1fjgf_
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.58 — Ferredoxin-like
超家族 Superfamily superfamily	d.58.14 — Ribosomal protein S6
家族 Family family	d.58.14.1 — Ribosomal protein S6

结构域编号 domain_id	d1fjgg_
类 Class class	a — All alpha proteins
折叠类型 Fold fold	a.75 — Ribosomal protein S7
超家族 Superfamily superfamily	a.75.1 — Ribosomal protein S7
家族 Family family	a.75.1.1 — Ribosomal protein S7

结构域编号 domain_id	d1fjgh_
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.140 — Ribosomal protein S8
超家族 Superfamily superfamily	d.140.1 — Ribosomal protein S8
家族 Family family	d.140.1.1 — Ribosomal protein S8

结构域编号 domain_id	d1fjgi_
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.14 — Ribosomal protein S5 domain 2-like
超家族 Superfamily superfamily	d.14.1 — Ribosomal protein S5 domain 2-like
家族 Family family	d.14.1.1 — Translational machinery components

结构域编号 domain_id	d1fjgj_
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.58 — Ferredoxin-like
超家族 Superfamily superfamily	d.58.15 — Ribosomal protein S10
家族 Family family	d.58.15.1 — Ribosomal protein S10

结构域编号 domain_id	d1fjgk_
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.55 — Ribonuclease H-like motif
超家族 Superfamily superfamily	c.55.4 — Translational machinery components
家族 Family family	c.55.4.1 — Ribosomal protein L18 and S11

结构域编号 domain_id	d1fjgl_
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.40 — OB-fold
超家族 Superfamily superfamily	b.40.4 — Nucleic acid-binding proteins
家族 Family family	b.40.4.5 — Cold shock DNA-binding domain-like

结构域编号 domain_id	d1fjgm_
类 Class class	a — All alpha proteins
折叠类型 Fold fold	a.156 — S13-like H2TH domain
超家族 Superfamily superfamily	a.156.1 — S13-like H2TH domain
家族 Family family	a.156.1.1 — Ribosomal protein S13

结构域编号 domain_id	d1fjgn_
类 Class class	g — Small proteins
折叠类型 Fold fold	g.39 — Glucocorticoid receptor-like (DNA-binding domain)
超家族 Superfamily superfamily	g.39.1 — Glucocorticoid receptor-like (DNA-binding domain)
家族 Family family	g.39.1.7 — Ribosomal protein S14

结构域编号 domain_id	d1fjgo_
类 Class class	a — All alpha proteins
折叠类型 Fold fold	a.16 — S15/NS1 RNA-binding domain
超家族 Superfamily superfamily	a.16.1 — S15/NS1 RNA-binding domain
家族 Family family	a.16.1.2 — Ribosomal protein S15

结构域编号 domain_id	d1fjgp_
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.27 — Ribosomal protein S16
超家族 Superfamily superfamily	d.27.1 — Ribosomal protein S16
家族 Family family	d.27.1.1 — Ribosomal protein S16

结构域编号 domain_id	d1fjgq_
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.40 — OB-fold
超家族 Superfamily superfamily	b.40.4 — Nucleic acid-binding proteins
家族 Family family	b.40.4.5 — Cold shock DNA-binding domain-like

结构域编号 domain_id	d1fjgr_
类 Class class	a — All alpha proteins
折叠类型 Fold fold	a.4 — DNA/RNA-binding 3-helical bundle
超家族 Superfamily superfamily	a.4.8 — Ribosomal protein S18
家族 Family family	a.4.8.1 — Ribosomal protein S18

结构域编号 domain_id	d1fjgs_
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.28 — Ribosomal protein S19
超家族 Superfamily superfamily	d.28.1 — Ribosomal protein S19
家族 Family family	d.28.1.1 — Ribosomal protein S19

结构域编号 domain_id	d1fjgt_
类 Class class	a — All alpha proteins
折叠类型 Fold fold	a.7 — Spectrin repeat-like
超家族 Superfamily superfamily	a.7.6 — Ribosomal protein S20
家族 Family family	a.7.6.1 — Ribosomal protein S20

结构域编号 domain_id	d1fjgv_
类 Class class	j — Peptides
折叠类型 Fold fold	j.9 — Arg-rich RNA binding peptides
超家族 Superfamily superfamily	j.9.1 — 30S ribosomal protein THX
家族 Family family	j.9.1.1 — 30S ribosomal protein THX

CATH v4.4 (25 domains)

结构域编号 domain_id	1fjgB01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	40 — 3-Layer(aba) Sandwich
拓扑 Topology topology	50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily	10490 — Glucose-6-phosphate isomerase like protein; domain 1

结构域编号 domain_id	1fjgB02
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	10 — Orthogonal Bundle
拓扑 Topology topology	287 — Helix Hairpins
同源超家族 H-superfamily homologous superfamily	610 — Helix hairpin bin

结构域编号 domain_id	1fjgC01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	300 — GMP Synthetase; Chain A, domain 3
同源超家族 H-superfamily homologous superfamily	20 — K homology (KH) domain

结构域编号 domain_id	1fjgC02
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	1140 — Ribosomal protein S3 C-terminal domain
同源超家族 H-superfamily homologous superfamily	32 — Ribosomal protein S3, C-terminal domain

结构域编号 domain_id	1fjgD01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	10 — Orthogonal Bundle
拓扑 Topology topology	1050 — Ribosomal Protein S4 Delta 41; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily	10 — Ribosomal protein S4/S9, N-terminal domain

结构域编号 domain_id	1fjgD02
类 Class class	3 — Alpha Beta
架构 Architecture architecture	10 — Roll
拓扑 Topology topology	290 — Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A
同源超家族 H-superfamily homologous superfamily	10 — RNA-binding S4 domain

结构域编号 domain_id	1fjgE01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	160 — Double Stranded RNA Binding Domain
同源超家族 H-superfamily homologous superfamily	20 —

结构域编号 domain_id	1fjgE02
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	230 — Ribosomal Protein S5; domain 2
同源超家族 H-superfamily homologous superfamily	10 —

结构域编号 domain_id	1fjgF00
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily	60 — Ribosomal protein S6/Translation elongation factor EF1B

结构域编号 domain_id	1fjgG00
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	10 — Orthogonal Bundle
拓扑 Topology topology	455 — Ribosomal Protein S7
同源超家族 H-superfamily homologous superfamily	10 — Ribosomal protein S7/S5

结构域编号 domain_id	1fjgH01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	1370 — Ribosomal Protein S8; Chain: A, domain 1
同源超家族 H-superfamily homologous superfamily	30 —

结构域编号 domain_id	1fjgH02
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	1490 — Dna Ligase; domain 1
同源超家族 H-superfamily homologous superfamily	10 —

结构域编号 domain_id	1fjgI00
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	230 — Ribosomal Protein S5; domain 2
同源超家族 H-superfamily homologous superfamily	10 —

结构域编号 domain_id	1fjgJ00
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily	600 — Ribosomal protein S10

结构域编号 domain_id	1fjgK00
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	420 — Nucleotidyltransferase; domain 5
同源超家族 H-superfamily homologous superfamily	80 — Ribosomal protein S11/S14

结构域编号 domain_id	1fjgL00
类 Class class	2 — Mainly Beta
架构 Architecture architecture	40 — Beta Barrel
拓扑 Topology topology	50 — OB fold (Dihydrolipoamide Acetyltransferase, E2P)
同源超家族 H-superfamily homologous superfamily	140 — Nucleic acid-binding proteins

结构域编号 domain_id	1fjgM01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	10 — Orthogonal Bundle
拓扑 Topology topology	8 — Helicase, Ruva Protein; domain 3
同源超家族 H-superfamily homologous superfamily	50 —

结构域编号 domain_id	1fjgM02
类 Class class	4 — Few Secondary Structures
架构 Architecture architecture	10 — Irregular
拓扑 Topology topology	910 — 30s ribosomal protein s13; domain 2
同源超家族 H-superfamily homologous superfamily	10 — Ribosomal protein S13/S18, C-terminal domain

结构域编号 domain_id	1fjgN00
类 Class class	4 — Few Secondary Structures
架构 Architecture architecture	10 — Irregular
拓扑 Topology topology	830 — 30s Ribosomal Protein S14; Chain N
同源超家族 H-superfamily homologous superfamily	10 — Ribosomal Protein S14/S29

结构域编号 domain_id	1fjgO00
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	10 — Orthogonal Bundle
拓扑 Topology topology	287 — Helix Hairpins
同源超家族 H-superfamily homologous superfamily	10 — S15/NS1, RNA-binding

结构域编号 domain_id	1fjgP00
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	1320 — S16 Ribosomal Protein; Chain: A;
同源超家族 H-superfamily homologous superfamily	10 — Ribosomal protein S16

结构域编号 domain_id	1fjgQ00
类 Class class	2 — Mainly Beta
架构 Architecture architecture	40 — Beta Barrel
拓扑 Topology topology	50 — OB fold (Dihydrolipoamide Acetyltransferase, E2P)
同源超家族 H-superfamily homologous superfamily	140 — Nucleic acid-binding proteins

结构域编号 domain_id	1fjgR00
类 Class class	4 — Few Secondary Structures
架构 Architecture architecture	10 — Irregular
拓扑 Topology topology	640 — 30s Ribosomal Protein S18
同源超家族 H-superfamily homologous superfamily	10 — Ribosomal protein S18

结构域编号 domain_id	1fjgS00
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	860 — 30s Ribosomal Protein S19; Chain A
同源超家族 H-superfamily homologous superfamily	10 — Ribosomal protein S19/S15

结构域编号 domain_id	1fjgT00
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	58 — Methane Monooxygenase Hydroxylase; Chain G, domain 1
同源超家族 H-superfamily homologous superfamily	110 — Ribosomal protein S20

▶

7. 引用文献 (3)

▶

晶胞边长 a length_a	402.001 Å
晶胞边长 b length_b	402.001 Å
晶胞边长 c length_c	176.489 Å
晶胞夹角 α angle_alpha	90.00 °
晶胞夹角 β angle_beta	90.00 °
晶胞夹角 γ angle_gamma	90.00 °
晶胞分子数 Z z_pdb	8

空间群 space_group	P 41 21 2
空间群编号 int_tables_number	92
晶系 crystal_system	—

分辨率 resolution	3.000 Å
最低分辨率 resolution_low	95.346 Å
R 因子 r_factor	0.2210
R_work r_work	0.2210
R_free r_free	0.2550

fit	/app/data/saxs_computation/fj/1fjg/1fjg.fit
pddf	/app/data/pr_computation/fj/1fjg/1fjg.pr.out
profile	/app/data/saxs_computation/fj/1fjg/1fjg.dat

;STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTICS STREPTOMYCIN, SPECTINOMYCIN, AND PAROMOMYCIN ;

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

1. 结构基本信息 1. Structure Basics

2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

4. 晶体学与实验 4. Crystallography & Experiment

晶胞参数 Unit Cell

对称性 Symmetry

精修参数 Refinement

衍射实验 Diffraction

5. 实体与聚合体信息 (27)

Entity 1 polymer

聚合体 Polymer

Entity 2 polymer

聚合体 Polymer

Entity 3 polymer

聚合体 Polymer

Entity 4 polymer

聚合体 Polymer

Entity 5 polymer

聚合体 Polymer

Entity 6 polymer

聚合体 Polymer

Entity 7 polymer

聚合体 Polymer

Entity 8 polymer

聚合体 Polymer

Entity 9 polymer

聚合体 Polymer

Entity 10 polymer

聚合体 Polymer

Entity 11 polymer

聚合体 Polymer

Entity 12 polymer

聚合体 Polymer

Entity 13 polymer

聚合体 Polymer

Entity 14 polymer

聚合体 Polymer

Entity 15 polymer

聚合体 Polymer

Entity 16 polymer

聚合体 Polymer

Entity 17 polymer

聚合体 Polymer

Entity 18 polymer

聚合体 Polymer

Entity 19 polymer

聚合体 Polymer

Entity 20 polymer

聚合体 Polymer

Entity 21 polymer

聚合体 Polymer

Entity 22 polymer

聚合体 Polymer

Entity 23 non-polymer

Entity 24 non-polymer

Entity 25 non-polymer

Entity 26 non-polymer

Entity 27 non-polymer

6. 折叠分类 (SCOP + CATH) 47 domains

SCOP 2.08 (22 domains)

CATH v4.4 (25 domains)

7. 引用文献 (3)

8. 文件与曲线 (10)

Files (7)

Curves (3)