1i97

CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH TETRACYCLINE

Method: X-RAY DIFFRACTION D_max: 211.2 Å Quality: GOOD

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

下载 Download SAXS (.dat) P(r) (.pr.out) CIF

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1. 结构基本信息 1. Structure Basics

条目编号 entry_id	1i97
沉积日期 deposition_date	2001-03-18
结构标题 title	CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH TETRACYCLINE
关键词 keywords	30S ribosome, antibiotics, tetracycline, RIBOSOME; RIBOSOME
实验方法 method	X-RAY DIFFRACTION

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2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier	66.17 Å
回转半径 Rg (电子) rg_electron	66.91 Å
零角强度 I(0) i0	24212500000.00
分子量 molecular_weight	832960.0 kDa
排除体积 excluded_volume	821910 Å³
包络体积 envelope_volume	1218100 Å³
水化壳体积 shell_volume	152960 Å³
包络直径 envelope_diameter	242.3 Å
壳层 Rg shell_rg	66.59 Å
包络 Rg envelope_rg	65.19 Å
形状 Rg shape_rg	65.48 Å
总 Rg total_rg	68.37 Å
总原子数 total_atoms	33951
残基数 n_residues	1514
球谐函数阶数 n_harmonics	20
q 范围 q_range	— – 0.5000 Å⁻¹
数据点数 n_points	101
壳层类型 shell_type	directional
溶剂电子密度 solvent_density	0.3340 e/Å³
壳层衬度 contrast_shell	0.0300 e/Å³
CRYSOL 版本 crysol_version	4.1.3

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3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax	211.2 Å
Rg (实空间) rg_real	66.30 Å
Rg 误差 (实空间) rg_real_error	1.12 Å
I(0) (实空间) i0_real	2.4200e+10
I(0) 误差 (实空间) i0_real_error	4.8300e+08
Rg (倒空间) rg_reciprocal	65.96 Å
I(0) (倒空间) i0_reciprocal	24190000000.0000
解质量估计 total_estimate	0.8439
解质量评级 solution_quality	GOOD a GOOD solution
P(r) 峰数 n_peaks	1
主峰位置 r_peak_primary	70.4 Å
偏度 Skewness skewness	0.445
峰度 Kurtosis kurtosis	-0.235
角度范围 angular_range	— – 0.1200 Å⁻¹
当前正则化参数 α current_alpha	0.0100
最高正则化参数 α highest_alpha	1156000000.0000
实空间数据点数 n_real_points	25
GNOM 版本 gnom_version	4.1.3
质量判据 quality_criteria	AN1: 0.000; Oscil: 0.910; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.988; Smooth: 0.248

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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合体信息 (25)

Entity 1 polymer

描述 description	16S RRNA
分子量 formula_weight	491510.9 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polyribonucleotide
链编号 strand_id	A
原子数 atom_count	36361

UGUUGGAGAGUUUGAUCCUGGCUCAGGGUGAACGCUGGCGGCGUGCCUAAGACAUGCAAGUCGUGCGGGCCGCGGGGUUUUACUCCGUGGUCAGCGGCGGACGGGUGAGUAACGCGUGGGUGACCUACCCGGAAGAGGGGGACAACCCGGGGAAACUCGGGCUAAUCCCCCAUGUGGACCCGCCCCUUGGGGUGUGUCCAAAGGGCUUUGCCCGCUUCCGGAUGGGCCCGCGUCCCAUCAGCUAGUUGGUGGGGUAAUGGCCCACCAAGGCGACGACGGGUAGCCGGUCUGAGAGGAUGGCCGGCCACAGGGGCACUGAGACACGGGCCCCACUCCUACGGGAGGCAGCAGUUAGGAAUCUUCCGCAAUGGGCGCAAGCCUGACGGAGCGACGCCGCUUGGAGGAAGAAGCCCUUCGGGGUGUAAACUCCUGAACCCGGGACGAAACCCCCGACGAGGGGACUGACGGUACCGGGGUAAUAGCGCCGGCCAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGCGCGAGCGUUACCCGGAUUCACUGGGCGUAAAGGGCGUGUAGGCGGCCUGGGGCGUCCCAUGUGAAAGACCACGGCUCAACCGUGGGGGAGCGUGGGAUACGCUCAGGCUAGACGGUGGGAGAGGGUGGUGGAAUUCCCGGAGUAGCGGUGAAAUGCGCAGAUACCGGGAGGAACGCCGAUGGCGAAGGCAGCCACCUGGUCCACCCGUGACGCUGAGGCGCGAAAGCGUGGGGAGCAAACCGGAUUAGAUACCCGGGUAGUCCACGCCCUAAACGAUGCGCGCUAGGUCUCUGGGUCUCCUGGGGGCCGAAGCUAACGCGUUAAGCGCGCCGCCUGGGGAGUACGGCCGCAAGGCUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGAAGAACCUUACCAGGCCUUGACAUGCUAGGGAACCCGGGUGAAAGCCUGGGGUGCCCCGCGAGGGGAGCCCUAGCACAGGUGCUGCAUGGCCGUCGUCAGCUCGUGCCGUGAGGUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCCCGCCGUUAGUUGCCAGCGGUUCGGCCGGGCACUCUAACGGGACUGCCCGCGAAAGCGGGAGGAAGGAGGGGACGACGUCUGGUCAGCAUGGCCCUUACGGCCUGGGCGACACACGUGCUACAAUGCCCACUACAAAGCGAUGCCACCCGGCAACGGGGAGCUAAUCGCAAAAAGGUGGGCCCAGUUCGGAUUGGGGUCUGCAACCCGACCCCAUGAAGCCGGAAUCGCUAGUAAUCGCGGAUCAGCCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACGCCAUGGGAGCGGGCUCUACCCGAAGUCGCCGGGAGCCUACGGGCAGGCGCCGAGGGUAGGGCCCGUGACUGGGGCGAAGUCGUAACAAGGUAGCUGUACCGGAAGGUGCGGCUGGAUCACCUC

Entity 2 polymer

描述 description	30S RIBOSOMAL PROTEIN S2
分子量 formula_weight	29186.5 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	B

PVEITVKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGTILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVVEPSPSYALVQEAEATETPEGESEVEA

Entity 3 polymer

描述 description	30S RIBOSOMAL PROTEIN S3
分子量 formula_weight	26619.9 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	C

GNKIHPIGFRLGITRDWESRWYAGKKQYRHLLLEDQRIRGLLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGGERIRVLREELAKLTGKNVALNVQEVQNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGAKGAKVIVSGRIGGAEQARTEWAAQGRVPLHTLRANIDYGFALARTTYGVLGVKAYIFLGEVIGGQKPKARPELPKAEERPRRRRPAVRVKKEE

Entity 4 polymer

描述 description	30S RIBOSOMAL PROTEIN S4
分子量 formula_weight	24242.3 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	D

GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQLVIEFYSR

Entity 5 polymer

描述 description	30S RIBOSOMAL PROTEIN S5
分子量 formula_weight	17452.2 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	E

PETDFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRNMVEVPLQNGTIPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELGSRNPINIAYATMEALRQLRTKADVERLRKGEAHAQAQG

Entity 6 polymer

描述 description	30S RIBOSOMAL PROTEIN S6
分子量 formula_weight	11988.8 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	F

MRRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVEELGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLARELRIRDNVRRVMVVKSQEPFLANA

Entity 7 polymer

描述 description	30S RIBOSOMAL PROTEIN S7
分子量 formula_weight	17919.8 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	G

ARRRRAEVRQLQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIAHELMDAAEGKGGAVKKKEDVERMAEANRAYAHYRW

Entity 8 polymer

描述 description	30S RIBOSOMAL PROTEIN S8
分子量 formula_weight	15886.7 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	H

MLTDPIADMLTRIRNATRVYKESTEVPASRFKEEILKILAREGFIKGYERVEVDGKPYLRIHLKYGPRRQGPDPRPEQVIKHIRRISRPGRRVYVGVKEIPRVRRGLGIAILSTPKGVLTDREARKLGVGGELICEVW

Entity 9 polymer

描述 description	30S RIBOSOMAL PROTEIN S9
分子量 formula_weight	14429.7 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	I

MEQYYGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFDAYITVRGGGKSGQIDAIKLGIARALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSKR

Entity 10 polymer

描述 description	30S RIBOSOMAL PROTEIN S10
分子量 formula_weight	11823.8 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	J

PKIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPTRVRRFTVIRGPFKHKDSREHFELRTHNRLVDIINPNRKTIEQLMTLDLPTGVEIEIKTVGGGR

Entity 11 polymer

描述 description	30S RIBOSOMAL PROTEIN S11
分子量 formula_weight	13606.7 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	K

AKKPSKKKVKRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTGAGREQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFRKAS

Entity 12 polymer

描述 description	30S RIBOSOMAL PROTEIN S12
分子量 formula_weight	14506.2 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	L

PTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGTKKPKEAAKTAAKK

Entity 13 polymer

描述 description	30S RIBOSOMAL PROTEIN S13
分子量 formula_weight	14207.7 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	M

ARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVENTWKLEGELRAEVAANIKRLMDIGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKTVAGKKKAPRK

Entity 14 polymer

描述 description	30S RIBOSOMAL PROTEIN S14
分子量 formula_weight	7027.5 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	N

ARKALIEKAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW

Entity 15 polymer

描述 description	30S RIBOSOMAL PROTEIN S15
分子量 formula_weight	10447.2 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	O

PITKEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLLRYLQREDPERYRALIEKLGIRG

Entity 16 polymer

描述 description	30S RIBOSOMAL PROTEIN S16
分子量 formula_weight	10410.0 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	P

MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTTPDWLKVDVERARYWLSVGAQPTDTARRLLRQAGVFRQEAREGA

Entity 17 polymer

描述 description	30S RIBOSOMAL PROTEIN S17
分子量 formula_weight	12144.4 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	Q

PKKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEERYKVGDVVEIIEARPISKRKRFRVLRLVEEGRLDLVEKYLVRRQNYASLSKRGGKA

Entity 18 polymer

描述 description	30S RIBOSOMAL PROTEIN S18
分子量 formula_weight	10113.1 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	R

STKNAKPKKEAQRRPSRKAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGLSGKEQRILAKTIKRARILGLLPFTEKLVRK

Entity 19 polymer

描述 description	30S RIBOSOMAL PROTEIN S19
分子量 formula_weight	10474.3 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	S

PRSLKKGVFVDDHLLEKVLELNAKGEKRLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAPTRTYRGHGKEAKATKKK

Entity 20 polymer

描述 description	30S RIBOSOMAL PROTEIN S20
分子量 formula_weight	11604.9 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	T

AQKKPKRNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKAIQLAQEGKAEEALKIMRKAESLIDKAAKGSTLHKNAAARRKSRLMRKVRQLLEAAGAPLIGGGLSA

Entity 21 polymer

描述 description	30S RIBOSOMAL PROTEIN THX
分子量 formula_weight	3218.8 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	U

GKGDRRTRRGKIWRGTYGKYRPRKKK

Entity 22 non-polymer

描述 description	MAGNESIUM ION
分子量 formula_weight	24.3 kDa
来源方法 src_method	syn
拷贝数 entity_count	75

Entity 23 non-polymer

描述 description	OCTADECATUNGSTENYL DIPHOSPHATE
分子量 formula_weight	4363.0 kDa
来源方法 src_method	syn
拷贝数 entity_count	14

Entity 24 non-polymer

描述 description	TETRACYCLINE
分子量 formula_weight	444.4 kDa
来源方法 src_method	syn
拷贝数 entity_count	6

Entity 25 non-polymer

描述 description	ZINC ION
分子量 formula_weight	65.4 kDa
来源方法 src_method	syn
拷贝数 entity_count	2

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6. 折叠分类 (SCOP + CATH) 22 domains

SCOP 2.08 (22 domains)

结构域编号 domain_id	d1i97b_
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.23 — Flavodoxin-like
超家族 Superfamily superfamily	c.23.15 — Ribosomal protein S2
家族 Family family	c.23.15.1 — Ribosomal protein S2

结构域编号 domain_id	d1i97c1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.52 — Alpha-lytic protease prodomain-like
超家族 Superfamily superfamily	d.52.3 — Prokaryotic type KH domain (KH-domain type II)
家族 Family family	d.52.3.1 — Prokaryotic type KH domain (KH-domain type II)

结构域编号 domain_id	d1i97c2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.53 — Ribosomal protein S3 C-terminal domain
超家族 Superfamily superfamily	d.53.1 — Ribosomal protein S3 C-terminal domain
家族 Family family	d.53.1.1 — Ribosomal protein S3 C-terminal domain

结构域编号 domain_id	d1i97d_
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.66 — Alpha-L RNA-binding motif
超家族 Superfamily superfamily	d.66.1 — Alpha-L RNA-binding motif
家族 Family family	d.66.1.2 — Ribosomal protein S4 (bacteria)

结构域编号 domain_id	d1i97e1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.14 — Ribosomal protein S5 domain 2-like
超家族 Superfamily superfamily	d.14.1 — Ribosomal protein S5 domain 2-like
家族 Family family	d.14.1.1 — Translational machinery components

结构域编号 domain_id	d1i97e2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.50 — dsRBD-like
超家族 Superfamily superfamily	d.50.1 — dsRNA-binding domain-like
家族 Family family	d.50.1.2 — Ribosomal S5 protein, N-terminal domain

结构域编号 domain_id	d1i97f_
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.58 — Ferredoxin-like
超家族 Superfamily superfamily	d.58.14 — Ribosomal protein S6
家族 Family family	d.58.14.1 — Ribosomal protein S6

结构域编号 domain_id	d1i97g_
类 Class class	a — All alpha proteins
折叠类型 Fold fold	a.75 — Ribosomal protein S7
超家族 Superfamily superfamily	a.75.1 — Ribosomal protein S7
家族 Family family	a.75.1.1 — Ribosomal protein S7

结构域编号 domain_id	d1i97h_
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.140 — Ribosomal protein S8
超家族 Superfamily superfamily	d.140.1 — Ribosomal protein S8
家族 Family family	d.140.1.1 — Ribosomal protein S8

结构域编号 domain_id	d1i97i_
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.14 — Ribosomal protein S5 domain 2-like
超家族 Superfamily superfamily	d.14.1 — Ribosomal protein S5 domain 2-like
家族 Family family	d.14.1.1 — Translational machinery components

结构域编号 domain_id	d1i97j_
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.58 — Ferredoxin-like
超家族 Superfamily superfamily	d.58.15 — Ribosomal protein S10
家族 Family family	d.58.15.1 — Ribosomal protein S10

结构域编号 domain_id	d1i97k_
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.55 — Ribonuclease H-like motif
超家族 Superfamily superfamily	c.55.4 — Translational machinery components
家族 Family family	c.55.4.1 — Ribosomal protein L18 and S11

结构域编号 domain_id	d1i97l_
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.40 — OB-fold
超家族 Superfamily superfamily	b.40.4 — Nucleic acid-binding proteins
家族 Family family	b.40.4.5 — Cold shock DNA-binding domain-like

结构域编号 domain_id	d1i97m_
类 Class class	a — All alpha proteins
折叠类型 Fold fold	a.156 — S13-like H2TH domain
超家族 Superfamily superfamily	a.156.1 — S13-like H2TH domain
家族 Family family	a.156.1.1 — Ribosomal protein S13

结构域编号 domain_id	d1i97n_
类 Class class	g — Small proteins
折叠类型 Fold fold	g.39 — Glucocorticoid receptor-like (DNA-binding domain)
超家族 Superfamily superfamily	g.39.1 — Glucocorticoid receptor-like (DNA-binding domain)
家族 Family family	g.39.1.7 — Ribosomal protein S14

结构域编号 domain_id	d1i97o_
类 Class class	a — All alpha proteins
折叠类型 Fold fold	a.16 — S15/NS1 RNA-binding domain
超家族 Superfamily superfamily	a.16.1 — S15/NS1 RNA-binding domain
家族 Family family	a.16.1.2 — Ribosomal protein S15

结构域编号 domain_id	d1i97p_
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.27 — Ribosomal protein S16
超家族 Superfamily superfamily	d.27.1 — Ribosomal protein S16
家族 Family family	d.27.1.1 — Ribosomal protein S16

结构域编号 domain_id	d1i97q_
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.40 — OB-fold
超家族 Superfamily superfamily	b.40.4 — Nucleic acid-binding proteins
家族 Family family	b.40.4.5 — Cold shock DNA-binding domain-like

结构域编号 domain_id	d1i97r_
类 Class class	a — All alpha proteins
折叠类型 Fold fold	a.4 — DNA/RNA-binding 3-helical bundle
超家族 Superfamily superfamily	a.4.8 — Ribosomal protein S18
家族 Family family	a.4.8.1 — Ribosomal protein S18

结构域编号 domain_id	d1i97s_
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.28 — Ribosomal protein S19
超家族 Superfamily superfamily	d.28.1 — Ribosomal protein S19
家族 Family family	d.28.1.1 — Ribosomal protein S19

结构域编号 domain_id	d1i97t_
类 Class class	a — All alpha proteins
折叠类型 Fold fold	a.7 — Spectrin repeat-like
超家族 Superfamily superfamily	a.7.6 — Ribosomal protein S20
家族 Family family	a.7.6.1 — Ribosomal protein S20

结构域编号 domain_id	d1i97u_
类 Class class	j — Peptides
折叠类型 Fold fold	j.9 — Arg-rich RNA binding peptides
超家族 Superfamily superfamily	j.9.1 — 30S ribosomal protein THX
家族 Family family	j.9.1.1 — 30S ribosomal protein THX

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7. 引用文献 (2)

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晶胞边长 a length_a	406.900 Å
晶胞边长 b length_b	406.900 Å
晶胞边长 c length_c	175.200 Å
晶胞夹角 α angle_alpha	90.00 °
晶胞夹角 β angle_beta	90.00 °
晶胞夹角 γ angle_gamma	90.00 °
晶胞分子数 Z z_pdb	8

空间群 space_group	P 41 21 2
空间群编号 int_tables_number	92
晶系 crystal_system	—

分辨率 resolution	4.500 Å
最低分辨率 resolution_low	35.000 Å
R 因子 r_factor	0.2260
R_work r_work	0.2230
R_free r_free	0.2540

fit	/app/data/saxs_computation/i9/1i97/1i97.fit
pddf	/app/data/pr_computation/i9/1i97/1i97.pr.out
profile	/app/data/saxs_computation/i9/1i97/1i97.dat

CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH TETRACYCLINE

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

1. 结构基本信息 1. Structure Basics

2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

4. 晶体学与实验 4. Crystallography & Experiment

晶胞参数 Unit Cell

对称性 Symmetry

精修参数 Refinement

衍射实验 Diffraction

5. 实体与聚合体信息 (25)

Entity 1 polymer

聚合体 Polymer

Entity 2 polymer

聚合体 Polymer

Entity 3 polymer

聚合体 Polymer

Entity 4 polymer

聚合体 Polymer

Entity 5 polymer

聚合体 Polymer

Entity 6 polymer

聚合体 Polymer

Entity 7 polymer

聚合体 Polymer

Entity 8 polymer

聚合体 Polymer

Entity 9 polymer

聚合体 Polymer

Entity 10 polymer

聚合体 Polymer

Entity 11 polymer

聚合体 Polymer

Entity 12 polymer

聚合体 Polymer

Entity 13 polymer

聚合体 Polymer

Entity 14 polymer

聚合体 Polymer

Entity 15 polymer

聚合体 Polymer

Entity 16 polymer

聚合体 Polymer

Entity 17 polymer

聚合体 Polymer

Entity 18 polymer

聚合体 Polymer

Entity 19 polymer

聚合体 Polymer

Entity 20 polymer

聚合体 Polymer

Entity 21 polymer

聚合体 Polymer

Entity 22 non-polymer

Entity 23 non-polymer

Entity 24 non-polymer

Entity 25 non-polymer

6. 折叠分类 (SCOP + CATH) 22 domains

SCOP 2.08 (22 domains)

7. 引用文献 (2)

8. 文件与曲线 (10)

Files (7)

Curves (3)