DETAILED VIEW OF A KEY ELEMENT OF THE RIBOSOME ASSEMBLY: CRYSTAL STRUCTURE OF THE S15-RRNA COMPLEX

entry_id	1dk1
deposition_date	1999-12-06
title	DETAILED VIEW OF A KEY ELEMENT OF THE RIBOSOME ASSEMBLY: CRYSTAL STRUCTURE OF THE S15-RRNA COMPLEX
keywords	RIBOSOME, S15, PROTEIN, RNA; RIBOSOME
method	X-RAY DIFFRACTION

rg_guinier	20.81 Å
rg_electron	19.96 Å
i0	31490300.00
molecular_weight	29294.0 kDa
excluded_volume	30584 ų
envelope_volume	41567 ų
shell_volume	18358 ų
envelope_diameter	76.7 Å
shell_rg	25.51 Å
envelope_rg	20.00 Å
shape_rg	19.90 Å
total_rg	20.62 Å
total_atoms	1955
n_residues	139
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	76.0 Å
rg_real	20.86 Å
rg_real_error	0.67 Å
i0_real	3.1490e+07
i0_real_error	4.7340e+05
rg_reciprocal	20.85 Å
i0_reciprocal	31490000.0000
total_estimate	0.8338
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	25.4 Å
skewness	0.474
kurtosis	0.097
angular_range	— – 0.3800 Å−1
current_alpha	0.0000
highest_alpha	1882000.0000
n_real_points	70
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.682; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.900; Smooth: 0.888

Unit Cell

length_a	128.800 Å
length_b	128.800 Å
length_c	65.100 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	12

Symmetry

space_group	P 64 2 2
int_tables_number	181
crystal_system	—

Refinement

resolution	2.800 Å
resolution_low	8.000 Å
r_factor	0.2130
r_work	0.2130
r_free	0.2910

Diffraction

temperature

100.0 K

Files (7)

• pr_distribution /app/data/pr_computation/dk/1dk1/pr_distribution.json
• pr_output /app/data/pr_computation/dk/1dk1/1dk1.pr.out
• pr_plot /app/data/visualization/pr_computation/dk/1dk1/1dk1_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/dk/1dk1/1dk1.dat
• saxs_fit /app/data/saxs_computation/dk/1dk1/1dk1.fit
• saxs_log /app/data/saxs_computation/dk/1dk1/1dk1.log
• saxs_plot /app/data/visualization/saxs_computation/dk/1dk1/1dk1_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/dk/1dk1/1dk1.fit
pddf	/app/data/pr_computation/dk/1dk1/1dk1.pr.out
profile	/app/data/saxs_computation/dk/1dk1/1dk1.dat