Current Protein Identity：Q92784
New Search
Difference tags compare only the current result set; every original PDB and assembly record remains separate.
Related-Structure Differences
Each row represents one biological assembly in one PDB entry; multiple monomers of the same protein are listed separately.
| PDB Entry | Assembly / Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Non-polymers | Experimental Method | Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|---|
| 2KWJ Solution structures of the double PHD fingers of human transcriptional protein DPF3 bound to a histone peptide containing acetylation at lysine 14 Deposited 2010-04-12 | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric（2） Consistent with protein count |
Chain A
261–372（112 aa）
Fragment：PHD-types 1 and 2 residues 261-372
|
Not recorded | ZN ZINC ION × 4 | SOLUTION NMR |
NMR measurement conditions
pH 6.5；298 K；Pressure ambient
NMR sample composition
100 mM potassium phosphate, 2 mM DTT, 100% D2O | 100% D2O
|
Resolution not provided |
| 2KWK Solution structures of the double PHD fingers of human transcriptional protein DPF3b bound to a H3 peptide wild type Deposited 2010-04-12 | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric（2） Consistent with protein count |
Chain A
261–372（112 aa）
Fragment：PHD-types 1 and 2 residues 261-372
|
Not recorded | ZN ZINC ION × 4 | SOLUTION NMR |
NMR measurement conditions
pH 6.5；298 K；Pressure ambient
NMR sample composition
100 mM potassium phosphate, 2 mM DTT, 100% D2O | 100% D2O
|
Resolution not provided |
| 2KWN Solution structure of the double PHD (plant homeodomain) fingers of human transcriptional protein DPF3b bound to a histone H4 peptide containing acetylation at Lysine 16 Deposited 2010-04-13 | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric（2） Consistent with protein count |
Chain A
261–372（112 aa）
Fragment：PHD-types 1 and 2 residues 261-372
|
Not recorded | ZN ZINC ION × 4 | SOLUTION NMR |
NMR measurement conditions
pH 6.5；298 K；Pressure ambient
NMR sample composition
100 mM sodium phosphate, 2 mM DTT, 100% D2O | 100% D2O
NMR sample composition
100 mM sodium phosphate, 2 mM DTT, 90% H2O/10% D2O | 90% H2O/10% D2O
|
Resolution not provided |
| 2KWO Solution structure of the double PHD (plant homeodomain) fingers of human transcriptional protein DPF3b bound to a histone H4 peptide containing N-terminal acetylation at Serine 1 Deposited 2010-04-14 | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric（2） Consistent with protein count |
Chain A
261–372（112 aa）
Fragment：PHD-types 1 and 2 residues 261-372
|
Not recorded | ZN ZINC ION × 4 | SOLUTION NMR |
NMR measurement conditions
pH 6.5；298 K；Pressure ambient
NMR sample composition
100 mM sodium phosphate, 2 mM DTT, 100% D2O | 100% D2O
NMR sample composition
100 mM sodium phosphate, 2 mM DTT, 90% H2O/10% D2O | 90% H2O/10% D2O
|
Resolution not provided |
| 5I3L DPF3b in complex with H3K14ac peptide Deposited 2016-02-10 | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric（3） Consistent with protein count |
Chain A
254–368（115 aa）
Chain B
254–368（115 aa）
|
Not recorded | ZN ZINC ION × 8 EDO 1,2-ETHANEDIOL × 1 UNX UNKNOWN LIGAND × 32 NA SODIUM ION × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；293 K；1.4 M sodium citrate, 0.1 M HEPES, 5% MPD
|
Resolution 1.85 Å R-free 0.212 |
| 5SZB Structure of human Dpf3 double-PHD domain bound to histone H3 tail peptide with acetylated K14 Deposited 2016-08-13 | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric（2） Consistent with protein count |
Chain A
254–368（115 aa）
Fragment：double-PHD domain (UNP residues 254-368)
|
Not recorded | ZN ZINC ION × 4 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；293 K；1.2 M tri-sodium citrate, 0.1 M HEPES pH 7.5, 4% MPD
|
Resolution 1.20 Å R-free 0.155 |
| 5SZB Structure of human Dpf3 double-PHD domain bound to histone H3 tail peptide with acetylated K14 Deposited 2016-08-13 | Assembly 2 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric（4） Consistent with protein count |
Chain A
254–368（115 aa）
Fragment：double-PHD domain (UNP residues 254-368)
|
Not recorded | ZN ZINC ION × 8 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 2 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；293 K；1.2 M tri-sodium citrate, 0.1 M HEPES pH 7.5, 4% MPD
|
Resolution 1.20 Å R-free 0.155 |
| 5SZC Structure of human Dpf3 double-PHD domain bound to histone H3 tail peptide with monomethylated K4 and acetylated K14 Deposited 2016-08-13 | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric（2） Consistent with protein count |
Chain A
254–368（115 aa）
Fragment：double-PHD domain (UNP residues 254-368)
|
Not recorded | ZN ZINC ION × 4 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；293 K；1.2 M tri-sodium citrate, 0.1 M HEPES pH 7.5, 4% MPD
|
Resolution 1.19 Å R-free 0.167 |
| 9UTH DPF3b in complex with H3K14cr peptide Deposited 2025-05-03 | Assembly 1 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric（4） Consistent with protein count |
Chain A
255–368（114 aa）
Chain C
255–368（114 aa）
|
Not recorded | ZN ZINC ION × 8 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；277.15 K；4 M Sodium Formate, pH 7.0
|
Resolution 2.69 Å R-free 0.230 |
| 9UTH DPF3b in complex with H3K14cr peptide Deposited 2025-05-03 | Assembly 2 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric（4） Consistent with protein count |
Chain E
255–368（114 aa）
Chain G
255–368（114 aa）
|
Not recorded | ZN ZINC ION × 8 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；277.15 K；4 M Sodium Formate, pH 7.0
|
Resolution 2.69 Å R-free 0.230 |