DPF3b in complex with H3K14cr peptide

entry_id	9uth
deposition_date	2025-05-03
last_revision	2026-05-06
title	DPF3b in complex with H3K14cr peptide
keywords	DPF3b, H3K14 crotonylation, PEPTIDE BINDING PROTEIN; PEPTIDE BINDING PROTEIN
method	X-RAY DIFFRACTION

rg_guinier	31.27 Å
rg_electron	31.09 Å
i0	74663800.00
molecular_weight	62638.0 kDa
excluded_volume	75795 ų
envelope_volume	103510 ų
shell_volume	28798 ų
envelope_diameter	106.9 Å
shell_rg	36.95 Å
envelope_rg	30.36 Å
shape_rg	31.08 Å
total_rg	31.62 Å
total_atoms	4286
n_residues	553
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	100.9 Å
rg_real	31.44 Å
rg_real_error	0.77 Å
i0_real	7.4660e+07
i0_real_error	1.0910e+06
rg_reciprocal	31.38 Å
i0_reciprocal	74660000.0000
total_estimate	0.8727
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	27.7 Å
skewness	0.357
kurtosis	-0.711
angular_range	— – 0.2550 Å−1
current_alpha	0.0000
highest_alpha	7001000.0000
n_real_points	52
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.881; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.778; Smooth: 0.919

Unit Cell

length_a	70.088 Å
length_b	84.253 Å
length_c	111.123 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	16

Symmetry

space_group	P 21 21 21
int_tables_number	19
crystal_system	—

Refinement

resolution	2.690 Å
resolution_low	36.110 Å
r_factor	0.1844
r_work	0.1810
r_free	0.2300

Diffraction

temperature

100.0 K

Files (7)

• pr_distribution /app/data/pr_computation/ut/9uth/pr_distribution.json
• pr_output /app/data/pr_computation/ut/9uth/9uth.pr.out
• pr_plot /app/data/visualization/pr_computation/ut/9uth/9uth_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/ut/9uth/9uth.dat
• saxs_fit /app/data/saxs_computation/ut/9uth/9uth.fit
• saxs_log /app/data/saxs_computation/ut/9uth/9uth.log
• saxs_plot /app/data/visualization/saxs_computation/ut/9uth/9uth_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/ut/9uth/9uth.fit
pddf	/app/data/pr_computation/ut/9uth/9uth.pr.out
profile	/app/data/saxs_computation/ut/9uth/9uth.dat