查看完整 summary.json 原文
{
"code": "SASDA32",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/nm",
"project": {
"title": "Standard proteins",
"publication": null,
"status": "released",
"submitted_date": null,
"released_date": "2015-07-07"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDA32.out",
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDA32.dat",
"intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDA32_dat_img.png",
"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDA32_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDA32_pofr_img.png",
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDA32_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDA32.sascif",
"experiment": {
"instrument": {
"detector": {
"type": "Custom-built",
"name": "Pilatus 1M-W",
"resolution": 0.172
},
"name": "DORIS III, DESY",
"city": "Hamburg",
"country": "Germany",
"beamline_name": "EMBL X33",
"beam_geometry": "0.60",
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
"sample_path_length": null,
"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "Bovine Serum Albumin",
"short_name": "BSA",
"sequence": ">sp|P02768|ALBU_HUMAN Albumin OS=Homo sapiens OX=9606 GN=ALB PE=1 SV=2\r\nMKWVTFISLLFLFSSAYSRGVFRRDAHKSEVAHRFKDLGEENFKALVLIAFAQYLQQCPF\r\nEDHVKLVNEVTEFAKTCVADESAENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEP\r\nERNECFLQHKDDNPNLPRLVRPEVDVMCTAFHDNEETFLKKYLYEIARRHPYFYAPELLF\r\nFAKRYKAAFTECCQAADKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKAWAV\r\nARLSQRFPKAEFAEVSKLVTDLTKVHTECCHGDLLECADDRADLAKYICENQDSISSKLK\r\nECCEKPLLEKSHCIAEVENDEMPADLPSLAADFVESKDVCKNYAEAKDVFLGMFLYEYAR\r\nRHPDYSVVLLLRLAKTYETTLEKCCAAADPHECYAKVFDEFKPLVEEPQNLIKQNCELFE\r\nQLGEYKFQNALLVRYTKKVPQVSTPTLVEVSRNLGKVGSKCCKHPEAKRMPCAEDYLSVV\r\nLNQLCVLHEKTPVSDRVTKCCTESLVNRRPCFSALEVDETYVPKEFNAETFTFHADICTL\r\nSEKERQIKKQTALVELVKHKPKATKEQLKAVMDDFAAFVEKCCKADDKETCFAEEGKKLV\r\nAASQAALGL",
"organism": "Bos taurus (Bovine)",
"uniprot_code": "P02769",
"uniprot_range_first": 2,
"uniprot_range_last": 222,
"oligomerization": "monomer",
"molecular_type": "protein",
"uniprot_sequence": "MKWVTFISLLFLFSSAYSRGVFRRDAHKSEVAHRFKDLGEENFKALVLIAFAQYLQQCPF\r\nEDHVKLVNEVTEFAKTCVADESAENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEP\r\nERNECFLQHKDDNPNLPRLVRPEVDVMCTAFHDNEETFLKKYLYEIARRHPYFYAPELLF\r\nFAKRYKAAFTECCQAADKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKAWAV\r\nARLSQRFPKAEFAEVSKLVTDLTKVHTECCHGDLLECADDRADLAKYICENQDSISSKLK\r\nECCEKPLLEKSHCIAEVENDEMPADLPSLAADFVESKDVCKNYAEAKDVFLGMFLYEYAR\r\nRHPDYSVVLLLRLAKTYETTLEKCCAAADPHECYAKVFDEFKPLVEEPQNLIKQNCELFE\r\nQLGEYKFQNALLVRYTKKVPQVSTPTLVEVSRNLGKVGSKCCKHPEAKRMPCAEDYLSVV\r\nLNQLCVLHEKTPVSDRVTKCCTESLVNRRPCFSALEVDETYVPKEFNAETFTFHADICTL\r\nSEKERQIKKQTALVELVKHKPKATKEQLKAVMDDFAAFVEKCCKADDKETCFAEEGKKLV\r\nAASQAALGL",
"mw": 69.366,
"total_mw": 69.366,
"number_molecules": 1,
"complex_state": null,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": "Just another bsa"
}
],
"buffer": {
"name": "50 mM HEPES 50 mM KCl",
"concentration_unit": "mM",
"comment": "4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid",
"additive": "KCl 50.000 mM",
"concentration": 50.0,
"pka": 7.0,
"ph": 7.5,
"deuteration": null
},
"purity_method": "gel filtration",
"name": "Bovine serum albumin in HEPES",
"ext_coefficient": 6.46,
"contrast": 2.953,
"specific_vol": 0.737,
"dry_vol": 17570,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": "EMBL-Hamburg",
"address": "Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany",
"full_name": "European Molecular Biology Laboratory (EMBL) - Hamburg outstation",
"webpage": "http://www.embl-hamburg.de/index.php"
}
],
"contributor_name": "Darja",
"contributor_surname": "Ruskule",
"orcid": null
}
],
"concentration_method": "nanodrop",
"concentration_unit": "mg/ml",
"date": "2012-09-12",
"storage_temperature": 10.0,
"cell_temperature": 10.0,
"exposure_time": 15.0,
"number_of_frames": 8,
"wavelength": 0.15,
"sample_detector_distance": 2.7,
"concentration_min": null,
"concentration_max": 25.64,
"sample_volume": null,
"flow_rate": null,
"s_min": 0.087,
"s_max": 6.015,
"total_exposure_time": null,
"seccolumn": null
},
"fits": [
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDA32_fit1_model1_img.png",
"software": "DAMMIF",
"pdb_link": [],
"model_title": null,
"type_of_model": "dummy",
"software_version": "",
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDA32_fit1_model1.pdb",
"model_mw": 65.0,
"bead_radius": 1.8,
"log": "https://www.sasbdb.org/media/log_files/32_orig_8.log",
"symmetry": "P1",
"comment": "",
"user": 1
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDA32_fit1_fixed_fit_img.png",
"software": null,
"chi_square_value": 2.566404,
"p_value": 0.0,
"fit_residual_plot": "SASDA32_fit1_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDA32_fit1.fir",
"fit_log": null,
"software_version": null,
"description": null
},
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/bsa_3V03-A_img.png",
"software": "OLIGOMER",
"pdb_link": [
{
"pdb_code": "3v03",
"ext_code": "3v03",
"ext_type": "pdb",
"difference_with_model": null
}
],
"model_title": null,
"type_of_model": "atomic",
"software_version": "28",
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDA32_fit2_model1.pdb",
"model_mw": 62.5,
"bead_radius": 0.0,
"log": "https://www.sasbdb.org/media/log_files/oligomer_7.log",
"symmetry": "",
"comment": "",
"user": 1
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDA32_fit2_fixed_fit_img.png",
"software": null,
"chi_square_value": 4.0052,
"p_value": 0.0,
"fit_residual_plot": "SASDA32_fit2_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDA32_fit2.fit",
"fit_log": null,
"software_version": null,
"description": null
}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": "GNOM",
"i0_calibration_standard": "BSA",
"description": null,
"experiment_description": null,
"tags": [
"X33"
],
"intensity_unit": null,
"experimental_mw": 64.0,
"experimental_mw_error": null,
"guinier_i0_mw": 64.0,
"guinier_i0_mw_error": null,
"porod_mw": null,
"porod_mw_error": null,
"pddf_i0": 58.1,
"pddf_i0_error": null,
"guinier_i0": 59.3,
"guinier_i0_error": null,
"pddf_rg": 2.81,
"pddf_rg_error": null,
"guinier_rg": 2.92,
"guinier_rg_error": null,
"pddf_dmax": 9.3,
"pddf_dmax_error": null,
"porod_volume": 97.1,
"porod_volume_error": null,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 19,
"guinier_point_last": 115,
"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": "https://www.sasbdb.org/media/standard_curves/bsa_019_2.dat",
"intensities_log_log_plot": "SASDA32_datloglog_img.png",
"symmetry": null,
"last_modified": "2023-05-25T11:21:52.654103+02:00",
"bragg_peak": []
}查看完整 manifest.json 原文
{
"code": "SASDA32",
"status": "success",
"started_at": "2026-08-11T13:29:18.904481+00:00",
"finished_at": "2026-08-11T13:29:29.627538+00:00",
"source_last_modified": "2023-05-25T11:21:52.654103+02:00",
"files": [
{
"status": "downloaded",
"url": "https://www.sasbdb.org/rest-api/entry/summary/SASDA32/",
"path": "/data/saxsdb/sasbdb/entries/32/sasda32/source/summary.json",
"size": 8671,
"sha256": "0690be3e7bbc41e3748a3e9a0f8b6e377b563983321bbba989c80e41339700c9"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/intensities_files/SASDA32.dat",
"path": "/data/saxsdb/sasbdb/entries/32/sasda32/source/SASDA32.dat",
"size": 98752,
"sha256": "9b4d17eaedb9601ccf0705bb7baad195d2df33e5b40dcc8a0e40dde190be92ee",
"role": "curve"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/p_of_R_files/SASDA32.out",
"path": "/data/saxsdb/sasbdb/entries/32/sasda32/source/SASDA32.out",
"size": 40483,
"sha256": "ed72d8ccc1a0113342563a9d5e467164b96e7d075f63d04a2f17df4b933f0917",
"role": "pddf"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDA32.sascif",
"path": "/data/saxsdb/sasbdb/entries/32/sasda32/source/SASDA32.sascif",
"size": 1024523,
"sha256": "936b283302f94cfa116abd6bc21ff8a66ff84ea0558c6b81c0306dd2c1509bcb",
"role": "sascif"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/zip_directories/SASDA32.zip",
"path": "/data/saxsdb/sasbdb/entries/32/sasda32/source/SASDA32.zip",
"size": 194742,
"sha256": "bd63543fa6690005b06b9074ad36a8bfef492497f0926a24f99a3cecd5b0eb2d",
"role": "full_entry_zip",
"zip_member_count": 6,
"zip_validation": "central_directory_readable"
}
]
}
