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{
"code": "SASDA35",
"status": "Published",
"type_of_curve": "Extrapolated to infinite dilution",
"angular_unit": "1/nm",
"project": {
"title": "The Salmonella enterica ZinT structure, zinc affinity and interaction with the high-affinity uptake protein ZnuA provide insight into the management of periplasmic zinc.",
"publication": {
"title": "The Salmonella enterica ZinT structure, zinc affinity and interaction with the high-affinity uptake protein ZnuA provide insight into the management of periplasmic zinc.",
"author_list": "Ilari A, Alaleona F, Tria G, Petrarca P, Battistoni A, Zamparelli C, Verzili D, Falconi M, Chiancone E",
"journal": "Biochim Biophys Acta",
"doi": "10.1016/j.bbagen.2013.10.010",
"pmid": "24128931",
"published_date": "2014 Jan"
},
"status": "released",
"submitted_date": null,
"released_date": "2014-07-01"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDA35.out",
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDA35.dat",
"intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDA35_dat_img.png",
"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDA35_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDA35_pofr_img.png",
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDA35_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDA35.sascif",
"experiment": {
"instrument": {
"detector": {
"type": "Dectris",
"name": "Pilatus 1M",
"resolution": 172.0
},
"name": "ESRF",
"city": "Grenoble",
"country": "France",
"beamline_name": "BM29",
"beam_geometry": "",
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
"sample_path_length": null,
"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "High-affinity zinc transporter periplasmic component",
"short_name": "ZinT",
"sequence": ">tr|V2JZU2|V2JZU2_SALET High-affinity zinc transporter periplasmic component (Fragment) OS=Salmonella enterica subsp. enterica serovar Nchanga str. CFSAN001092 GN=znuA PE=4 SV=1\r\nFAALSAALWGSATQAADAAVVASLKPLGFIASAIADGVTDTQVLLPDGASEHDYSLRPSD\r\nVKRLQGADLVVWVGPEMEAFMEKSVRNIPDNKQVTIAQLADVKPLLMKGADDDEDEHAHT\r\nGADEEKGDVHHHHGEYNMHLWLSPEIARATAVAIHEKLVELMPQSRAKLDANLKDFEAQL\r\nAATDKQVGNELAPLKGKGYFVFHDAYGYYEKHYGLTPLGHFTVNPEIQPGAQRLHEIRTQ\r\nLVEQKATCVFAEPQFRPAVVEAVARGTSVRMGTLDPLGTNIKLGKTSYSAFLSQLANQYA\r\nSCLKGD",
"organism": "Salmonella enterica subsp. enterica serovar Nchanga",
"uniprot_code": "V2JZU2",
"uniprot_range_first": null,
"uniprot_range_last": null,
"oligomerization": "monomer",
"molecular_type": "protein",
"uniprot_sequence": null,
"mw": 33.25,
"total_mw": 33.25,
"number_molecules": 1,
"complex_state": null,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": null
},
{
"long_name": "Zinc/cadmium-binding protein",
"short_name": "SeZnuA",
"sequence": ">tr|L6R5I5|L6R5I5_SALEN Zinc/cadmium-binding protein OS=Salmonella enterica subsp. enterica serovar Enteritidis str. 543463 40-18 GN=SEEE4018_10142 PE=4 SV=1\r\nMLLVNSPAFAHGHHAHGAPMTEVEQKAAAGVFDDANVRDRALTDWDGMWQSVYPYLVSGE\r\nLDPVFRQKAKKDPEKTFEDIKAYYRKGYVTNVETIGIENGVIEFHRDNNVASCKYNYAGY\r\nKILTYASGKKGVRYLFECKDANSKAPKYVQFSDHIIAPRKSAHFHIFMGNTSQQALLQEM\r\nENWPTYYPYQLKANEVVDEMLHH",
"organism": "Salmonella enterica subsp. enterica serovar Enteritidis",
"uniprot_code": "L6R5I5",
"uniprot_range_first": null,
"uniprot_range_last": null,
"oligomerization": "monomer",
"molecular_type": "protein",
"uniprot_sequence": null,
"mw": 23.24,
"total_mw": 23.24,
"number_molecules": 1,
"complex_state": null,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": null
}
],
"buffer": {
"name": "50 mM HEPES 50 mM KCl",
"concentration_unit": "mM",
"comment": "4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid",
"additive": "KCl 50.000 mM",
"concentration": 50.0,
"pka": 7.0,
"ph": 7.5,
"deuteration": null
},
"purity_method": null,
"name": "SeZinT-SeZnuA complex",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": "EMBL-Hamburg",
"address": "Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany",
"full_name": "European Molecular Biology Laboratory (EMBL) - Hamburg outstation",
"webpage": "http://www.embl-hamburg.de/index.php"
}
],
"contributor_name": "Giancarlo",
"contributor_surname": "Tria",
"orcid": null
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2013-05-09",
"storage_temperature": 4.0,
"cell_temperature": 4.0,
"exposure_time": 1.0,
"number_of_frames": 10,
"wavelength": 0.93,
"sample_detector_distance": 2.43,
"concentration_min": 0.17,
"concentration_max": 5.0,
"sample_volume": null,
"flow_rate": null,
"s_min": 0.05,
"s_max": 3.6,
"total_exposure_time": null,
"seccolumn": null
},
"fits": [
{
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{
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"software": "BUNCH",
"pdb_link": [],
"model_title": null,
"type_of_model": "mix",
"software_version": "",
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"bead_radius": 1.9,
"log": null,
"symmetry": "",
"comment": "",
"user": 13
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDA35_fit1_fit_img.png",
"software": null,
"chi_square_value": 1.317904,
"p_value": 0.0,
"fit_residual_plot": "SASDA35_fit1_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDA35_fit1.fit",
"fit_log": null,
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},
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDA35_fit2_model1_img.png",
"software": "DAMMIF",
"pdb_link": [],
"model_title": null,
"type_of_model": "dummy",
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"model_data": "https://www.sasbdb.org/media/pdb_file/SASDA35_fit2_model1.pdb",
"model_mw": null,
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"log": null,
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"user": 13
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDA35_fit2_fit_img.png",
"software": null,
"chi_square_value": null,
"p_value": 0.0,
"fit_residual_plot": null,
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDA35_fit2.fit",
"fit_log": null,
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}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": null,
"i0_calibration_standard": "BSA",
"description": null,
"experiment_description": null,
"tags": [],
"intensity_unit": null,
"experimental_mw": 43.0,
"experimental_mw_error": null,
"guinier_i0_mw": null,
"guinier_i0_mw_error": null,
"porod_mw": null,
"porod_mw_error": null,
"pddf_i0": 45.55,
"pddf_i0_error": null,
"guinier_i0": 45.524,
"guinier_i0_error": null,
"pddf_rg": 2.5,
"pddf_rg_error": null,
"guinier_rg": 2.5,
"guinier_rg_error": null,
"pddf_dmax": 8.5,
"pddf_dmax_error": null,
"porod_volume": 55.0,
"porod_volume_error": null,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 45,
"guinier_point_last": 105,
"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": "https://www.sasbdb.org/media/standard_curves/BSa_002.dat",
"intensities_log_log_plot": "SASDA35_datloglog_img.png",
"symmetry": null,
"last_modified": "2019-12-06T13:07:15.624532+01:00",
"bragg_peak": []
}
