SASDAD8

Antiapoptotic membrane protein, (DpV84gp022) Deerpox virus

Data type: SASBDB experimental data Status: Published Curve type: Single concentration Last updated: 2019-12-06T13:07:15.624532+01:00
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1. Samples, Components and Experimental Conditions Sample & Experiment

Sample 1 · Antiapoptotic membrane protein, (DpV84gp022) Deerpox virus

Concentration0.22 – 6.34 Buffer / pH25 mM HEPES 150 mM NaCl / 7.5
Experimental temperature— Facility / beamlineAustralian Synchrotron / SAXS/WAXS
Wavelength— nmExposure1.0 s × 30

Molecular Components

ComponentType / organismUniProt and ConstructOligomeric StateMolecular weight
Antiapoptotic membrane protein
View sequence
MGSSHHHHHHSQDMEAAIEFDEIVKKLLNIYINDICTTGEKRLLNNYEKSILDRIYKSCEYIKKNYELDFNSMYNQININDITTSDIKSKIIEALLIDSRPSVKLATLSFISLIAEKWGEKNRAKIMEILSNEIVEKISNNGKDFIDFIDRDDDDIVDDYVLITNYLK
proteinDeerpox virus W-1170-84Q08FF81–155dimerMolecule count 219.6 kDa

Experimental Curves

CurvePoints / columnsq rangeUncertainty qualityNegative-intensity pointsSource file
1443[3]0.252658–5.95401 1/nmHas uncertainty columnMissing 00sasbdb/entries/d8/sasdad8/source/SASDAD8.dat
▼

2. Measurements Reported by SASBDB Reported Results

MetricMethodValueUncertaintyUnit
dmaxP(r)11.1—nm
i0Guinier0.1880.0001—
i0P(r)0.192——
mwExperimental38.5—kDa
porod_volumePorod61.43—nm³
rgGuinier2.640.003nm
rgP(r)2.79—nm

These values are reported by SASBDB; SAXSdb did not recalculate them from the experimental curve.

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3. Source Fits and Models Source Fits & Models

This entry has no source fit record.

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4. Source File Index Source Files

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5. Experiment Description and Publication Experiment & Publication

▼

6. Complete Source Record Complete Source Record

The following content comes directly from the SASBDB entry. Missing values are shown as “—”; SAXSdb does not infer undeclared units.

Open the original SASBDB entry

Buffer and Sample Properties

Buffer name25 mM HEPES 150 mM NaClBuffer concentration25.0 mM
pH7.5Additives150 mM NaCl
Buffer description—
Purity measurement method—Extinction coefficient—
Absorbance—Scattering contrast—
Specific volume / dry volume— / —Mixture / deuteration— / —

Acquisition Conditions and Instrument

Measurement date2013-05-04Storage / measurement temperature20.0 / —
Exposure time1.0Frames30
Wavelength—Sample-to-detector distance1.6
SourceX-ray synchrotronDetectorPilatus 1M
Facility / beamlineAustralian Synchrotron / SAXS/WAXS · Melbourne, Australia
q range0.253 – 5.954Sample volume / flow rate— / —

Original SASBDB Plots

Experimental I(q)
Experimental I(q)
Experimental I(q), log-log
Experimental I(q), log-log
Guinier plot
Guinier plot
Kratky plot
Kratky plot
P(r) plot
P(r) plot

Downloadable Files

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All source fields (unfiltered)

Every source field is expanded here, including empty values, list members and fields already shown above.

summary.json:134 field values
Field pathRaw value
codeSASDAD8
statusPublished
type_of_curveSingle concentration
angular_unit1/nm
project.titleStructural basis of Deerpox virus-mediated inhibition of apoptosis.
project.publication.titleStructural basis of Deerpox virus-mediated inhibition of apoptosis.
project.publication.author_listBurton DR, Caria S, Marshall B, Barry M, Kvansakul M
project.publication.journalActa Crystallogr D Biol Crystallogr
project.publication.doi10.1107/S1399004715009402
project.publication.pmid26249341
project.publication.published_date2015 Aug
project.statusreleased
project.submitted_date2015-05-19
project.released_date2015-08-03
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experiment.instrument.detector.namePilatus 1M
experiment.instrument.detector.resolution172.0
experiment.instrument.nameAustralian Synchrotron
experiment.instrument.cityMelbourne
experiment.instrument.countryAustralia
experiment.instrument.beamline_nameSAXS/WAXS
experiment.instrument.beam_geometryPoint
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourceTrue
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameAntiapoptotic membrane protein
experiment.sample.molecule[0].short_namenull
experiment.sample.molecule[0].sequenceMGSSHHHHHHSQDMEAAIEFDEIVKKLLNIYINDICTTGE KRLLNNYEKSILDRIYKSCEYIKKNYELDF NSMYNQININDITTSDIKSKIIEALLIDSRPSVKLATLSFISLIAEKWGEKNRAKIMEILSNEIVEKISNNGKDFIDFID RDDDDIVDDYVLITNYLK
experiment.sample.molecule[0].organismDeerpox virus W-1170-84
experiment.sample.molecule[0].uniprot_codeQ08FF8
experiment.sample.molecule[0].uniprot_range_first1
experiment.sample.molecule[0].uniprot_range_last155
experiment.sample.molecule[0].oligomerizationdimer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMEAAIEFDEIVKKLLNIYINDICTTGEKRLLNNYEKSILDRIYKSCEYIKKNYELDFNSM YNQININDITTSDIKSKIIEALLIDSRPSVKLATLSFISLIAEKWGEKNRAKIMEILSNE IVEKISNNGKDFIDFIDRDDDDIVDDYVLITNYLKITIFGAILGITAYYICKYLLKSIF
experiment.sample.molecule[0].mw19.6
experiment.sample.molecule[0].total_mw39.2
experiment.sample.molecule[0].number_molecules2
experiment.sample.molecule[0].complex_statenull
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionnull
experiment.sample.buffer.name25 mM HEPES 150 mM NaCl
experiment.sample.buffer.concentration_unitmM
experiment.sample.buffer.commentnull
experiment.sample.buffer.additive150 mM NaCl
experiment.sample.buffer.concentration25.0
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.5
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameAntiapoptotic membrane protein, (DpV84gp022) Deerpox virus
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_namenull
experiment.contributor[0].affiliation[0].addressMelbourne, Australia
experiment.contributor[0].affiliation[0].full_nameLa Trobe University
experiment.contributor[0].affiliation[0].webpagehttp://www.latrobe.edu.au/
experiment.contributor[0].contributor_nameMarc
experiment.contributor[0].contributor_surnameKvansakul
experiment.contributor[0].orcidnull
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2013-05-04
experiment.storage_temperature20.0
experiment.cell_temperaturenull
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experiment.concentration_min0.22
experiment.concentration_max6.34
experiment.sample_volumenull
experiment.flow_ratenull
experiment.s_min0.253
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i0_calibration_standardnull
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pddf_dmax_errornull
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guinier_point_first4
guinier_point_last19
pddf_point_firstnull
pddf_point_lastnull
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symmetrynull
last_modified2019-12-06T13:07:15.624532+01:00
bragg_peak[]
manifest.json:36 field values
Field pathRaw value
codeSASDAD8
statussuccess
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View the complete summary.json source
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  "status": "Published",
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  "angular_unit": "1/nm",
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View the complete manifest.json source
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