SASDAD8

Antiapoptotic membrane protein, (DpV84gp022) Deerpox virus

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Single concentration 最后更新:2019-12-06T13:07:15.624532+01:00
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1. 样品、组分与实验条件 Sample & Experiment

样品 1 · Antiapoptotic membrane protein, (DpV84gp022) Deerpox virus

浓度0.22 – 6.34 缓冲液 / pH25 mM HEPES 150 mM NaCl / 7.5
实验温度— 设备 / 束线Australian Synchrotron / SAXS/WAXS
波长— nm曝光1.0 s × 30

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
Antiapoptotic membrane protein
查看序列
MGSSHHHHHHSQDMEAAIEFDEIVKKLLNIYINDICTTGEKRLLNNYEKSILDRIYKSCEYIKKNYELDFNSMYNQININDITTSDIKSKIIEALLIDSRPSVKLATLSFISLIAEKWGEKNRAKIMEILSNEIVEKISNNGKDFIDFIDRDDDDIVDDYVLITNYLK
proteinDeerpox virus W-1170-84Q08FF81–155dimer分子数 219.6 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
1443[3]0.252658–5.95401 1/nm含误差列缺失 00sasbdb/entries/d8/sasdad8/source/SASDAD8.dat
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2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)11.1—nm
i0Guinier0.1880.0001—
i0P(r)0.192——
mwExperimental38.5—kDa
porod_volumePorod61.43—nm³
rgGuinier2.640.003nm
rgP(r)2.79—nm

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

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3. 来源拟合与模型 Source Fits & Models

该条目没有来源拟合记录。

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4. 来源文件索引 Source Files

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5. 实验说明与论文 Experiment & Publication

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6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称25 mM HEPES 150 mM NaCl缓冲液浓度25.0 mM
pH7.5添加剂150 mM NaCl
缓冲液说明—
纯度测定方法—消光系数—
吸收值—散射对比度—
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2013-05-04储存 / 测量温度20.0 / —
曝光时间1.0帧数30
波长—样品-探测器距离1.6
光源X-ray synchrotron探测器Pilatus 1M
机构 / 束线Australian Synchrotron / SAXS/WAXS · Melbourne, Australia
q 范围0.253 – 5.954样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可下载文件

类别文件状态大小校验值下载与查看
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curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(2 项)
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:134 个字段值
字段路径原始值
codeSASDAD8
statusPublished
type_of_curveSingle concentration
angular_unit1/nm
project.titleStructural basis of Deerpox virus-mediated inhibition of apoptosis.
project.publication.titleStructural basis of Deerpox virus-mediated inhibition of apoptosis.
project.publication.author_listBurton DR, Caria S, Marshall B, Barry M, Kvansakul M
project.publication.journalActa Crystallogr D Biol Crystallogr
project.publication.doi10.1107/S1399004715009402
project.publication.pmid26249341
project.publication.published_date2015 Aug
project.statusreleased
project.submitted_date2015-05-19
project.released_date2015-08-03
pddf_datahttps://www.sasbdb.org/media/p_of_R_files/SASDAD8.out
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sascif_datahttps://www.sasbdb.org/media/sascif/sascif_files/SASDAD8.sascif
experiment.instrument.detector.typeDectris
experiment.instrument.detector.namePilatus 1M
experiment.instrument.detector.resolution172.0
experiment.instrument.nameAustralian Synchrotron
experiment.instrument.cityMelbourne
experiment.instrument.countryAustralia
experiment.instrument.beamline_nameSAXS/WAXS
experiment.instrument.beam_geometryPoint
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourceTrue
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameAntiapoptotic membrane protein
experiment.sample.molecule[0].short_namenull
experiment.sample.molecule[0].sequenceMGSSHHHHHHSQDMEAAIEFDEIVKKLLNIYINDICTTGE KRLLNNYEKSILDRIYKSCEYIKKNYELDF NSMYNQININDITTSDIKSKIIEALLIDSRPSVKLATLSFISLIAEKWGEKNRAKIMEILSNEIVEKISNNGKDFIDFID RDDDDIVDDYVLITNYLK
experiment.sample.molecule[0].organismDeerpox virus W-1170-84
experiment.sample.molecule[0].uniprot_codeQ08FF8
experiment.sample.molecule[0].uniprot_range_first1
experiment.sample.molecule[0].uniprot_range_last155
experiment.sample.molecule[0].oligomerizationdimer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMEAAIEFDEIVKKLLNIYINDICTTGEKRLLNNYEKSILDRIYKSCEYIKKNYELDFNSM YNQININDITTSDIKSKIIEALLIDSRPSVKLATLSFISLIAEKWGEKNRAKIMEILSNE IVEKISNNGKDFIDFIDRDDDDIVDDYVLITNYLKITIFGAILGITAYYICKYLLKSIF
experiment.sample.molecule[0].mw19.6
experiment.sample.molecule[0].total_mw39.2
experiment.sample.molecule[0].number_molecules2
experiment.sample.molecule[0].complex_statenull
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionnull
experiment.sample.buffer.name25 mM HEPES 150 mM NaCl
experiment.sample.buffer.concentration_unitmM
experiment.sample.buffer.commentnull
experiment.sample.buffer.additive150 mM NaCl
experiment.sample.buffer.concentration25.0
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.5
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameAntiapoptotic membrane protein, (DpV84gp022) Deerpox virus
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_namenull
experiment.contributor[0].affiliation[0].addressMelbourne, Australia
experiment.contributor[0].affiliation[0].full_nameLa Trobe University
experiment.contributor[0].affiliation[0].webpagehttp://www.latrobe.edu.au/
experiment.contributor[0].contributor_nameMarc
experiment.contributor[0].contributor_surnameKvansakul
experiment.contributor[0].orcidnull
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2013-05-04
experiment.storage_temperature20.0
experiment.cell_temperaturenull
experiment.exposure_time1.0
experiment.number_of_frames30
experiment.wavelengthnull
experiment.sample_detector_distance1.6
experiment.concentration_min0.22
experiment.concentration_max6.34
experiment.sample_volumenull
experiment.flow_ratenull
experiment.s_min0.253
experiment.s_max5.954
experiment.total_exposure_time30.0
experiment.seccolumnnull
fits[]
estimated_volume_methodnull
pddf_softwareATSAS GNOM
pddf_software_versionAutoGNOM
i0_calibration_standardnull
descriptionnull
experiment_descriptionnull
tags[]
intensity_unitnull
experimental_mw38.5
experimental_mw_errornull
guinier_i0_mwnull
guinier_i0_mw_errornull
porod_mwnull
porod_mw_errornull
pddf_i00.192
pddf_i0_errornull
guinier_i00.188
guinier_i0_error0.0001
pddf_rg2.79
pddf_rg_errornull
guinier_rg2.64
guinier_rg_error0.003
pddf_dmax11.1
pddf_dmax_errornull
porod_volume61.43
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_first4
guinier_point_last19
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDAD8_datloglog_img.png
symmetrynull
last_modified2019-12-06T13:07:15.624532+01:00
bragg_peak[]
manifest.json:36 个字段值
字段路径原始值
codeSASDAD8
statussuccess
started_at2026-08-11T15:50:48.441681+00:00
finished_at2026-08-11T15:50:55.408615+00:00
source_last_modified2019-12-06T13:07:15.624532+01:00
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查看完整 summary.json 原文
{
  "code": "SASDAD8",
  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/nm",
  "project": {
    "title": "Structural basis of Deerpox virus-mediated inhibition of apoptosis.",
    "publication": {
      "title": "Structural basis of Deerpox virus-mediated inhibition of apoptosis.",
      "author_list": "Burton DR, Caria S, Marshall B, Barry M, Kvansakul M",
      "journal": "Acta Crystallogr D Biol Crystallogr",
      "doi": "10.1107/S1399004715009402",
      "pmid": "26249341",
      "published_date": "2015 Aug"
    },
    "status": "released",
    "submitted_date": "2015-05-19",
    "released_date": "2015-08-03"
  },
  "pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDAD8.out",
  "intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDAD8.dat",
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      "country": "Australia",
      "beamline_name": "SAXS/WAXS",
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          "short_name": null,
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          "organism": "Deerpox virus W-1170-84",
          "uniprot_code": "Q08FF8",
          "uniprot_range_first": 1,
          "uniprot_range_last": 155,
          "oligomerization": "dimer",
          "molecular_type": "protein",
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  "last_modified": "2019-12-06T13:07:15.624532+01:00",
  "bragg_peak": []
}
查看完整 manifest.json 原文
{
  "code": "SASDAD8",
  "status": "success",
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