SASDAL2

Ovalbumin in PBS

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Single concentration 最后更新:2023-05-25T11:21:52.654103+02:00
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1. 样品、组分与实验条件 Sample & Experiment

样品 1 · Ovalbumin in PBS

浓度— – 24.2 mg/ml缓冲液 / pHPBS / 7.4
实验温度10.0 设备 / 束线DORIS III, DESY / EMBL X33
波长0.15 nm曝光15.0 s × 8

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
Ovalbumin
查看序列
>SP|P01012|OVAL_CHICKOVALBUMINOS=GALLUSGALLUSGN=SERPINB14PE=1SV=2MGSIGAASMEFCFDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDSIEAQCGTSVNVHSSLRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIRNVLQPSSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTEQESKPVQMMYQIGLFRVASMASEKMKILELPFASGTMSMLVLLPDEVSGLEQLESIINFEKLTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLMAMGITDVFSSSANLSGISSAESLKISQAVHAAHAEINEAGREVVGSAEAGVDAASVSEEFRADHPFLFCIKHIATNAVLFFGRCVSP
proteinGallus gallusP01012—–—monomer分子数 242.88 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
12168[3]0.0871252–6.01453 1/nm含误差列缺失 01sasbdb/entries/l2/sasdal2/source/SASDAL2.dat
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2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)7.8—nm
i0Guinier37.0——
i0P(r)36.1——
mwExperimental36.0—kDa
mwGuinier I(0)36.0—kDa
porod_volumePorod74.4—nm³
rgGuinier2.5—nm
rgP(r)2.37—nm

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

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3. 来源拟合与模型 Source Fits & Models

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4. 来源文件索引 Source Files

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5. 实验说明与论文 Experiment & Publication

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6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称PBS缓冲液浓度—
pH7.4添加剂—
缓冲液说明—
纯度测定方法—消光系数7.41
吸收值—散射对比度—
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2012-09-18储存 / 测量温度10.0 / 10.0
曝光时间15.0帧数8
波长0.15样品-探测器距离2.7
光源X-ray synchrotron探测器Pilatus 1M-W
机构 / 束线DORIS III, DESY / EMBL X33 · Hamburg, Germany
q 范围0.087 – 6.015样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可下载文件

类别文件状态大小校验值下载与查看
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pddfsasbdb/entries/l2/sasdal2/source/SASDAL2.outdownloaded32055b29f1a63a34ef19b7605fe1426f80c0969c07b614f8cde479fd380d750207ccd下载查看原文件源站
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curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(6 项)
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:177 个字段值
字段路径原始值
codeSASDAL2
statusPublished
type_of_curveSingle concentration
angular_unit1/nm
project.titleStandard proteins
project.publicationnull
project.statusreleased
project.submitted_datenull
project.released_date2015-07-07
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experiment.instrument.detector.typeCustom-built
experiment.instrument.detector.namePilatus 1M-W
experiment.instrument.detector.resolution0.172
experiment.instrument.nameDORIS III, DESY
experiment.instrument.cityHamburg
experiment.instrument.countryGermany
experiment.instrument.beamline_nameEMBL X33
experiment.instrument.beam_geometry0.60
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameOvalbumin
experiment.sample.molecule[0].short_namenull
experiment.sample.molecule[0].sequence>sp|P01012|OVAL_CHICK Ovalbumin OS=Gallus gallus GN=SERPINB14 PE=1 SV=2 MGSIGAASMEFCFDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRF DKLPGFGDSIEAQCGTSVNVHSSLRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQ CVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIRNVLQPSSVDSQTAMVLVNAIV FKGLWEKAFKDEDTQAMPFRVTEQESKPVQMMYQIGLFRVASMASEKMKILELPFASGTM SMLVLLPDEVSGLEQLESIINFEKLTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLMA MGITDVFSSSANLSGISSAESLKISQAVHAAHAEINEAGREVVGSAEAGVDAASVSEEFR ADHPFLFCIKHIATNAVLFFGRCVSP
experiment.sample.molecule[0].organismGallus gallus
experiment.sample.molecule[0].uniprot_codeP01012
experiment.sample.molecule[0].uniprot_range_firstnull
experiment.sample.molecule[0].uniprot_range_lastnull
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMGSIGAASMEFCFDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRF DKLPGFGDSIEAQCGTSVNVHSSLRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQ CVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIRNVLQPSSVDSQTAMVLVNAIV FKGLWEKAFKDEDTQAMPFRVTEQESKPVQMMYQIGLFRVASMASEKMKILELPFASGTM SMLVLLPDEVSGLEQLESIINFEKLTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLMA MGITDVFSSSANLSGISSAESLKISQAVHAAHAEINEAGREVVGSAEAGVDAASVSEEFR ADHPFLFCIKHIATNAVLFFGRCVSP
experiment.sample.molecule[0].mw42.88
experiment.sample.molecule[0].total_mw42.88
experiment.sample.molecule[0].number_molecules2
experiment.sample.molecule[0].complex_statenull
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_description
experiment.sample.buffer.namePBS
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pka7.0
experiment.sample.buffer.ph7.4
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameOvalbumin in PBS
experiment.sample.ext_coefficient7.41
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_nameEMBL-Hamburg
experiment.contributor[0].affiliation[0].addressNotkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany
experiment.contributor[0].affiliation[0].full_nameEuropean Molecular Biology Laboratory (EMBL) - Hamburg outstation
experiment.contributor[0].affiliation[0].webpagehttp://www.embl-hamburg.de/index.php
experiment.contributor[0].contributor_nameDarja
experiment.contributor[0].contributor_surnameRuskule
experiment.contributor[0].orcidnull
experiment.concentration_methodnanodrop
experiment.concentration_unitmg/ml
experiment.date2012-09-18
experiment.storage_temperature10.0
experiment.cell_temperature10.0
experiment.exposure_time15.0
experiment.number_of_frames8
experiment.wavelength0.15
experiment.sample_detector_distance2.7
experiment.concentration_minnull
experiment.concentration_max24.2
experiment.sample_volumenull
experiment.flow_ratenull
experiment.s_min0.087
experiment.s_max6.015
experiment.total_exposure_timenull
experiment.seccolumnnull
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fits[0].models[0].pdb_link[]
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fits[0].chi_square_value1.565001
fits[0].p_value0.0002
fits[0].fit_residual_plotSASDAL2_fit1_fitresiduals_img.png
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fits[0].descriptionnull
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fits[1].models[0].softwarePDB (Protein Data Bank)
fits[1].models[0].pdb_link[0].pdb_code1ova
fits[1].models[0].pdb_link[0].ext_code1ova
fits[1].models[0].pdb_link[0].ext_typepdb
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fits[1].softwarenull
fits[1].chi_square_value4.133089
fits[1].p_value0.0
fits[1].fit_residual_plotSASDAL2_fit2_fitresiduals_img.png
fits[1].fit_datahttps://www.sasbdb.org/media/fitting_files/SASDAL2_fit2.fit
fits[1].fit_lognull
fits[1].software_versionnull
fits[1].descriptionnull
estimated_volume_methodnull
pddf_softwareATSAS GNOM
pddf_software_versionGNOM
i0_calibration_standardBSA
descriptionnull
experiment_descriptionnull
tags[0]X33
intensity_unitnull
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experimental_mw_errornull
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guinier_i0_mw_errornull
porod_mwnull
porod_mw_errornull
pddf_i036.1
pddf_i0_errornull
guinier_i037.0
guinier_i0_errornull
pddf_rg2.37
pddf_rg_errornull
guinier_rg2.5
guinier_rg_errornull
pddf_dmax7.8
pddf_dmax_errornull
porod_volume74.4
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_first82
guinier_point_last151
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datahttps://www.sasbdb.org/media/standard_curves/bsa_002.dat
intensities_log_log_plotSASDAL2_datloglog_img.png
symmetrynull
last_modified2023-05-25T11:21:52.654103+02:00
bragg_peak[]
manifest.json:36 个字段值
字段路径原始值
codeSASDAL2
statussuccess
started_at2026-08-11T13:40:44.990991+00:00
finished_at2026-08-11T13:40:54.099661+00:00
source_last_modified2023-05-25T11:21:52.654103+02:00
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查看完整 summary.json 原文
{
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  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/nm",
  "project": {
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    "publication": null,
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    "submitted_date": null,
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查看完整 manifest.json 原文
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