mouse olfactomedin-1

{
  "code": "SASDAS7",
  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/nm",
  "project": {
    "title": "Olfactomedin-1 Has a V-shaped Disulfide-linked Tetrameric Structure.",
    "publication": {
      "title": "Olfactomedin-1 Has a V-shaped Disulfide-linked Tetrameric Structure.",
      "author_list": "Pronker MF, Bos TG, Sharp TH, Thies-Weesie DM, Janssen BJ",
      "journal": "J Biol Chem",
      "doi": "10.1074/jbc.M115.653485",
      "pmid": "25903135",
      "published_date": "2015 Jun 12"
    },
    "status": "released",
    "submitted_date": "2015-03-12",
    "released_date": "2015-04-27"
  },
  "pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDAS7.out",
  "intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDAS7.dat",
  "intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDAS7_dat_img.png",
  "intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDAS7_kratky_img.png",
  "pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDAS7_pofr_img.png",
  "intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDAS7_guinier_img.png",
  "sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDAS7.sascif",
  "experiment": {
    "instrument": {
      "detector": {
        "type": "Dectris",
        "name": "Pilatus 1M",
        "resolution": 172.0
      },
      "name": "ESRF",
      "city": "Grenoble",
      "country": "France",
      "beamline_name": "BM29",
      "beam_geometry": "",
      "type_of_source": "X-ray synchrotron",
      "point_source": null,
      "line_collimation": null,
      "sample_path_length": null,
      "line_collimation_slitlength": null,
      "line_collimation_integrationwidth": null,
      "xray_energy": null,
      "beam_profile_ah": null,
      "beam_profile_al": null
    },
    "sample": {
      "molecule": [
        {
          "long_name": "Noelin",
          "short_name": "Olfactomedin-1",
          "sequence": "MITNWMSQTLPSLVGLNTTRLSAASGGTLDRSTGVLPTNPEESW QVYSSAQDSEGRCICTVVAPQQTMCSRDARTKQLRQLLEKVQNMSQSIEVLDRRTQRDLQ YVEKMENQMKGLETKFKQVEESHKQHLARQFKAIKAKMDELRPLIPVLEEYKADAKLVLQ FKEEVQNLTSVLNELQEEIGAYDYDELQSRVSNLEERLRACMQKLACGKLTGISDPVTVK TSGSRFGSWMTDPLAPEGDNRVWYMDGYHNNRFVREYKSMVDFMNTDNFTSHRLPHPWSG TGQVVYNGSIYFNKFQSHIIIRFDLKTETILKTRSLDYAGYNNMYHYAWGGHSDIDLMVD ENGLWAVYATNQNAGNIVISKLDPVSLQILQTWNTSYPKRSAGEAFIICGTLYVTNGYSG GTKVHYAYQTNASTYEYIDIPFQNKYSHISMLDYNPKDRALYAW",
          "organism": "Mus musculus",
          "uniprot_code": "O88998",
          "uniprot_range_first": null,
          "uniprot_range_last": null,
          "oligomerization": "tetramer",
          "molecular_type": "protein",
          "uniprot_sequence": "MSVPLLKIGVVLSTMAMITNWMSQTLPSLVGLNTTRLSAASGGTLDRSTGVLPTNPEESW\nQVYSSAQDSEGRCICTVVAPQQTMCSRDARTKQLRQLLEKVQNMSQSIEVLDRRTQRDLQ\nYVEKMENQMKGLETKFKQVEESHKQHLARQFKAIKAKMDELRPLIPVLEEYKADAKLVLQ\nFKEEVQNLTSVLNELQEEIGAYDYDELQSRVSNLEERLRACMQKLACGKLTGISDPVTVK\nTSGSRFGSWMTDPLAPEGDNRVWYMDGYHNNRFVREYKSMVDFMNTDNFTSHRLPHPWSG\nTGQVVYNGSIYFNKFQSHIIIRFDLKTEAILKTRSLDYAGYNNMYHYAWGGHSDIDLMVD\nENGLWAVYATNQNAGNIVISKLDPVSLQILQTWNTSYPKRSAGEAFIICGTLYVTNGYSG\nGTKVHYAYQTNASTYEYIDIPFQNKYSHISMLDYNPKDRALYAWNNGHQTLYNVTLFHVI\nRSDEL",
          "mw": 64.0,
          "total_mw": 256.0,
          "number_molecules": 4,
          "complex_state": false,
          "deuteration": null,
          "molecule_source": "biological",
          "molecule_description": null
        }
      ],
      "buffer": {
        "name": "20 mM HEPES 150 mM NaCl",
        "concentration_unit": "mM",
        "comment": null,
        "additive": "150 mM NaCl",
        "concentration": 20.0,
        "pka": null,
        "ph": 7.5,
        "deuteration": null
      },
      "purity_method": null,
      "name": "mouse olfactomedin-1",
      "ext_coefficient": null,
      "contrast": null,
      "specific_vol": null,
      "dry_vol": null,
      "absorbption": null,
      "deuteration": null,
      "mixture": null
    },
    "contributor": [
      {
        "affiliation": [
          {
            "short_name": null,
            "address": "Utrecht, Netherlands",
            "full_name": "Utrecht University",
            "webpage": "http://www.uu.nl/"
          }
        ],
        "contributor_name": "Matti",
        "contributor_surname": "Pronker",
        "orcid": null
      }
    ],
    "concentration_method": null,
    "concentration_unit": "mg/ml",
    "date": "2013-11-06",
    "storage_temperature": 20.0,
    "cell_temperature": 20.0,
    "exposure_time": 0.056,
    "number_of_frames": 18,
    "wavelength": 0.93,
    "sample_detector_distance": 2.43,
    "concentration_min": null,
    "concentration_max": 3.55,
    "sample_volume": null,
    "flow_rate": null,
    "s_min": 0.028,
    "s_max": 4.494,
    "total_exposure_time": 1.0,
    "seccolumn": null
  },
  "fits": [
    {
      "models": [
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDAS7_fit1_model1_img.png",
          "software": "DAMMIF",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "dummy",
          "software_version": "",
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDAS7_fit1_model1.pdb",
          "model_mw": 391.0,
          "bead_radius": 6.3,
          "log": null,
          "symmetry": "",
          "comment": "",
          "user": 52
        }
      ],
      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDAS7_fit1_fit_img.png",
      "software": null,
      "chi_square_value": 4.313,
      "p_value": 0.0,
      "fit_residual_plot": "SASDAS7_fit1_fitresiduals_img.png",
      "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDAS7_fit1.fir",
      "fit_log": null,
      "software_version": null,
      "description": null
    }
  ],
  "estimated_volume_method": null,
  "pddf_software": "ATSAS GNOM",
  "pddf_software_version": null,
  "i0_calibration_standard": null,
  "description": "SAXS was used to determine that Olfactomedin-1 forms tetramers in solution (confirmed by SEC-MALS and AUC). Scattering data were combined with crystallographic and negative stain electron tomography data to construct a model of a V-shaped dimer-of-dimers.",
  "experiment_description": null,
  "tags": [],
  "intensity_unit": null,
  "experimental_mw": 249.0,
  "experimental_mw_error": null,
  "guinier_i0_mw": null,
  "guinier_i0_mw_error": null,
  "porod_mw": 323.0,
  "porod_mw_error": null,
  "pddf_i0": 250.9,
  "pddf_i0_error": 0.2,
  "guinier_i0": 249.0,
  "guinier_i0_error": 0.3,
  "pddf_rg": 8.79,
  "pddf_rg_error": 0.008,
  "guinier_rg": 8.5,
  "guinier_rg_error": null,
  "pddf_dmax": 30.0,
  "pddf_dmax_error": null,
  "porod_volume": 616.0,
  "porod_volume_error": null,
  "estimated_volume": null,
  "estimated_volume_error": null,
  "guinier_point_first": null,
  "guinier_point_last": null,
  "pddf_point_first": null,
  "pddf_point_last": null,
  "i0_calibration_standard_data": null,
  "intensities_log_log_plot": "SASDAS7_datloglog_img.png",
  "symmetry": null,
  "last_modified": "2019-12-06T13:07:15.624532+01:00",
  "bragg_peak": []
}

{
  "code": "SASDAS7",
  "status": "success",
  "started_at": "2026-08-11T15:37:35.188528+00:00",
  "finished_at": "2026-08-11T15:37:42.943401+00:00",
  "source_last_modified": "2019-12-06T13:07:15.624532+01:00",
  "files": [
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/rest-api/entry/summary/SASDAS7/",
      "path": "/data/saxsdb/sasbdb/entries/s7/sasdas7/source/summary.json",
      "size": 7275,
      "sha256": "fa70bb66f317e38c32fe61bffb76e113e3359af58e86e22b608f3c495a4ca907"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/intensities_files/SASDAS7.dat",
      "path": "/data/saxsdb/sasbdb/entries/s7/sasdas7/source/SASDAS7.dat",
      "size": 47224,
      "sha256": "68d1a59077adf5718f4aa725313e812e8f4134bf5dad60500f75ee37dceb3483",
      "role": "curve"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/p_of_R_files/SASDAS7.out",
      "path": "/data/saxsdb/sasbdb/entries/s7/sasdas7/source/SASDAS7.out",
      "size": 22225,
      "sha256": "8996f81a26c10d2f2f5172eacd920acf1698801b4001b1e1b4627a26085ef2e9",
      "role": "pddf"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDAS7.sascif",
      "path": "/data/saxsdb/sasbdb/entries/s7/sasdas7/source/SASDAS7.sascif",
      "size": 141215,
      "sha256": "02fb39a064c4aa512a78880351f3985aec444d3b36651fe184a5ea64a3def295",
      "role": "sascif"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/zip_directories/SASDAS7.zip",
      "path": "/data/saxsdb/sasbdb/entries/s7/sasdas7/source/SASDAS7.zip",
      "size": 28822,
      "sha256": "3c13570ba941bf5e6e84dd4c2514994a4bc8ecde2a4647e0964292598bd3bb0b",
      "role": "full_entry_zip",
      "zip_member_count": 4,
      "zip_validation": "central_directory_readable"
    }
  ]
}