Data type: SASBDB experimental dataStatus: PublishedCurve type: Single concentrationLast updated: 2023-06-21T07:56:39.492710+02:00
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1. Samples, Components and Experimental Conditions Sample & Experiment
Sample 1 · Aptamer AIR-3A G18U
Concentration
— – 0.2
Buffer / pH
water / 7.5
Experimental temperature
10.0
Facility / beamline
PETRA III / EMBL P12
Wavelength
0.12 nm
Exposure
0.05 s × 20
Molecular Components
Component
Type / organism
UniProt and Construct
Oligomeric State
Molecular weight
AIR-3A G18UView sequence
GGGGAGGCUGUGGUGAGUG
RNA—
——–—
tetramerMolecule count 4
6.349 kDa
Experimental Curves
Curve
Points / columns
q range
Uncertainty quality
Negative-intensity points
Source file
1
1682[3]
0.027543–4.45043 1/nm
Has uncertainty columnMissing 0
167
sasbdb/entries/x7/sasdax7/source/SASDAX7.dat
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2. Measurements Reported by SASBDB Reported Results
Metric
Method
Value
Uncertainty
Unit
dmax
P(r)
8.3
—
nm
i0
Guinier
3200.0
—
—
i0
P(r)
3090.0
—
—
mw
Experimental
24.0
—
kDa
mw
Porod
24.0
—
kDa
porod_volume
Porod
24.0
—
nm³
rg
Guinier
2.5
—
nm
rg
P(r)
2.5
—
nm
These values are reported by SASBDB; SAXSdb did not recalculate them from the experimental curve.
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3. Source Fits and Models Source Fits & Models
This entry has no source fit record.
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4. Source File Index Source Files
Category
Path
Download status
Size
curve
sasbdb/entries/x7/sasdax7/source/SASDAX7.dat
downloaded
75963
full_entry_zip
sasbdb/entries/x7/sasdax7/source/SASDAX7.zip
downloaded
30916
pddf
sasbdb/entries/x7/sasdax7/source/SASDAX7.out
downloaded
33372
sascif
sasbdb/entries/x7/sasdax7/source/SASDAX7.sascif
downloaded
117708
summary
sasbdb/entries/x7/sasdax7/source/summary.json
downloaded
5256
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5. Experiment Description and Publication Experiment & Publication
Related Publication
Title
Structure and target interaction of a G-quadruplex RNA-aptamer.
Authors
Szameit K, Berg K, Kruspe S, Valentini E, Magbanua E, Kwiatkowski M, Chauvot de Beauchêne I, Krichel B, Schamoni K, Uetrecht C, Svergun DI, Schlüter H, Zacharias M, Hahn U
DOI / PMID
10.1080/15476286.2016.1212151 / 27471797
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6. Complete Source Record Complete Source Record
The following content comes directly from the SASBDB entry. Missing values are shown as “—”; SAXSdb does not infer undeclared units.
Every source field is expanded here, including empty values, list members and fields already shown above.
summary.json:134 field values
Field path
Raw value
code
SASDAX7
status
Published
type_of_curve
Single concentration
angular_unit
1/nm
project.title
Structure and target interaction of a G-quadruplex RNA-aptamer.
project.publication.title
Structure and target interaction of a G-quadruplex RNA-aptamer.
project.publication.author_list
Szameit K, Berg K, Kruspe S, Valentini E, Magbanua E, Kwiatkowski M, Chauvot de Beauchêne I, Krichel B, Schamoni K, Uetrecht C, Svergun DI, Schlüter H, Zacharias M, Hahn U