SASDAX7

Aptamer AIR-3A G18U

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Single concentration 最后更新:2023-06-21T07:56:39.492710+02:00
▼

1. 样品、组分与实验条件 Sample & Experiment

样品 1 · Aptamer AIR-3A G18U

浓度— – 0.2 缓冲液 / pHwater / 7.5
实验温度10.0 设备 / 束线PETRA III / EMBL P12
波长0.12 nm曝光0.05 s × 20

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
AIR-3A G18U
查看序列
GGGGAGGCUGUGGUGAGUG
RNA———–—tetramer分子数 46.349 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
11682[3]0.027543–4.45043 1/nm含误差列缺失 0167sasbdb/entries/x7/sasdax7/source/SASDAX7.dat
▼

2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)8.3—nm
i0Guinier3200.0——
i0P(r)3090.0——
mwExperimental24.0—kDa
mwPorod24.0—kDa
porod_volumePorod24.0—nm³
rgGuinier2.5—nm
rgP(r)2.5—nm

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

▼

3. 来源拟合与模型 Source Fits & Models

该条目没有来源拟合记录。

▶

4. 来源文件索引 Source Files

▶

5. 实验说明与论文 Experiment & Publication

▼

6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称water缓冲液浓度—
pH7.5添加剂—
缓冲液说明—
纯度测定方法—消光系数—
吸收值—散射对比度—
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2013-12-06储存 / 测量温度10.0 / 10.0
曝光时间0.05帧数20
波长0.12样品-探测器距离3.1
光源X-ray synchrotron探测器Pilatus 2M
机构 / 束线PETRA III / EMBL P12 · DESY; Hamburg, Germany
q 范围0.028 – 4.45样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可下载文件

类别文件状态大小校验值下载与查看
curvesasbdb/entries/x7/sasdax7/source/SASDAX7.datdownloaded75963a5176a00f90d4365efecc1ac3f23d6c6264292f675300523e32abc3c93b35bc4下载查看原文件源站
full_entry_zipsasbdb/entries/x7/sasdax7/source/SASDAX7.zipdownloaded30916d5adf3aea6d86dd1542e703e18b53177db5701f57918bbb867d1e725feb5648a下载查看原文件源站
pddfsasbdb/entries/x7/sasdax7/source/SASDAX7.outdownloaded33372646c4be89071cdf5179a2dbc52f3b12312a254ea9358db5fe666c8d5eb16a318下载查看原文件源站
sascifsasbdb/entries/x7/sasdax7/source/SASDAX7.sascifdownloaded11770876918b874df098ba9eacf4059a36b4a9538fe550d74af3c53292429080dffc2d下载查看原文件源站
summarysasbdb/entries/x7/sasdax7/source/summary.jsondownloaded525624c87a18e06e08123a9e28b965dc1fd72432c15c2561dd9da4c43b4dbd11bcc5下载查看原文件源站
curve:来源记录
{
  "path": "/data/saxsdb/sasbdb/entries/x7/sasdax7/source/SASDAX7.dat",
  "role": "curve",
  "sha256": "a5176a00f90d4365efecc1ac3f23d6c6264292f675300523e32abc3c93b35bc4",
  "size": 75963,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/intensities_files/SASDAX7.dat"
}
full_entry_zip:来源记录与 ZIP 内部目录(2 项)
{
  "path": "/data/saxsdb/sasbdb/entries/x7/sasdax7/source/SASDAX7.zip",
  "role": "full_entry_zip",
  "sha256": "d5adf3aea6d86dd1542e703e18b53177db5701f57918bbb867d1e725feb5648a",
  "size": 30916,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/zip_directories/SASDAX7.zip",
  "zip_member_count": 2,
  "zip_members": [
    {
      "crc32": "e373444c",
      "name": "SASDAX7/experimental_data/SASDAX7.dat",
      "size": 75963
    },
    {
      "crc32": "291a0782",
      "name": "SASDAX7/pddf/SASDAX7.out",
      "size": 33372
    }
  ],
  "zip_validation": "central_directory_readable"
}
pddf:来源记录
{
  "path": "/data/saxsdb/sasbdb/entries/x7/sasdax7/source/SASDAX7.out",
  "role": "pddf",
  "sha256": "646c4be89071cdf5179a2dbc52f3b12312a254ea9358db5fe666c8d5eb16a318",
  "size": 33372,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/p_of_R_files/SASDAX7.out"
}
sascif:来源记录
{
  "path": "/data/saxsdb/sasbdb/entries/x7/sasdax7/source/SASDAX7.sascif",
  "role": "sascif",
  "sha256": "76918b874df098ba9eacf4059a36b4a9538fe550d74af3c53292429080dffc2d",
  "size": 117708,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDAX7.sascif"
}
summary:来源记录
{
  "path": "/data/saxsdb/sasbdb/entries/x7/sasdax7/source/summary.json",
  "sha256": "24c87a18e06e08123a9e28b965dc1fd72432c15c2561dd9da4c43b4dbd11bcc5",
  "size": 5256,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/rest-api/entry/summary/SASDAX7/"
}

全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:134 个字段值
字段路径原始值
codeSASDAX7
statusPublished
type_of_curveSingle concentration
angular_unit1/nm
project.titleStructure and target interaction of a G-quadruplex RNA-aptamer.
project.publication.titleStructure and target interaction of a G-quadruplex RNA-aptamer.
project.publication.author_listSzameit K, Berg K, Kruspe S, Valentini E, Magbanua E, Kwiatkowski M, Chauvot de Beauchêne I, Krichel B, Schamoni K, Uetrecht C, Svergun DI, Schlüter H, Zacharias M, Hahn U
project.publication.journalRNA Biol
project.publication.doi10.1080/15476286.2016.1212151
project.publication.pmid27471797
project.publication.published_date2016 Oct 2
project.statusreleased
project.submitted_datenull
project.released_date2016-09-08
pddf_datahttps://www.sasbdb.org/media/p_of_R_files/SASDAX7.out
intensities_datahttps://www.sasbdb.org/media/intensities_files/SASDAX7.dat
intensities_log_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDAX7_dat_img.png
intensities_kratky_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDAX7_kratky_img.png
pddf_plothttps://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDAX7_pofr_img.png
intensities_guinier_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDAX7_guinier_img.png
sascif_datahttps://www.sasbdb.org/media/sascif/sascif_files/SASDAX7.sascif
experiment.instrument.detector.typenull
experiment.instrument.detector.namePilatus 2M
experiment.instrument.detector.resolutionnull
experiment.instrument.namePETRA III
experiment.instrument.cityDESY; Hamburg
experiment.instrument.countryGermany
experiment.instrument.beamline_nameEMBL P12
experiment.instrument.beam_geometrynull
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameAIR-3A G18U
experiment.sample.molecule[0].short_namenull
experiment.sample.molecule[0].sequenceGGGGAGGCUGUGGUGAGUG
experiment.sample.molecule[0].organismnull
experiment.sample.molecule[0].uniprot_codenull
experiment.sample.molecule[0].uniprot_range_firstnull
experiment.sample.molecule[0].uniprot_range_lastnull
experiment.sample.molecule[0].oligomerizationtetramer
experiment.sample.molecule[0].molecular_typeRNA
experiment.sample.molecule[0].uniprot_sequencenull
experiment.sample.molecule[0].mw6.349
experiment.sample.molecule[0].total_mw25.396
experiment.sample.molecule[0].number_molecules4
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionnull
experiment.sample.buffer.namewater
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.5
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameAptamer AIR-3A G18U
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_nameEMBL-Hamburg
experiment.contributor[0].affiliation[0].addressNotkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany
experiment.contributor[0].affiliation[0].full_nameEuropean Molecular Biology Laboratory (EMBL) - Hamburg outstation
experiment.contributor[0].affiliation[0].webpagehttp://www.embl-hamburg.de/index.php
experiment.contributor[0].contributor_nameErica
experiment.contributor[0].contributor_surnameValentini
experiment.contributor[0].orcidnull
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2013-12-06
experiment.storage_temperature10.0
experiment.cell_temperature10.0
experiment.exposure_time0.05
experiment.number_of_frames20
experiment.wavelength0.12
experiment.sample_detector_distance3.1
experiment.concentration_minnull
experiment.concentration_max0.2
experiment.sample_volumenull
experiment.flow_ratenull
experiment.s_min0.028
experiment.s_max4.45
experiment.total_exposure_timenull
experiment.seccolumnnull
fits[]
estimated_volume_methodnull
pddf_softwareATSAS GNOM
pddf_software_versionnull
i0_calibration_standardnull
descriptionnull
experiment_descriptionnull
tags[]
intensity_unitnull
experimental_mw24.0
experimental_mw_errornull
guinier_i0_mwnull
guinier_i0_mw_errornull
porod_mw24.0
porod_mw_errornull
pddf_i03090.0
pddf_i0_errornull
guinier_i03200.0
guinier_i0_errornull
pddf_rg2.5
pddf_rg_errornull
guinier_rg2.5
guinier_rg_errornull
pddf_dmax8.3
pddf_dmax_errornull
porod_volume24.0
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_first87
guinier_point_last170
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDAX7_datloglog_img.png
symmetrynull
last_modified2023-06-21T07:56:39.492710+02:00
bragg_peak[]
manifest.json:36 个字段值
字段路径原始值
codeSASDAX7
statussuccess
started_at2026-08-11T15:41:47.003367+00:00
finished_at2026-08-11T15:41:56.152140+00:00
source_last_modified2023-06-21T07:56:39.492710+02:00
files[0].statusdownloaded
files[0].urlhttps://www.sasbdb.org/rest-api/entry/summary/SASDAX7/
files[0].path/data/saxsdb/sasbdb/entries/x7/sasdax7/source/summary.json
files[0].size5256
files[0].sha25624c87a18e06e08123a9e28b965dc1fd72432c15c2561dd9da4c43b4dbd11bcc5
files[1].statusdownloaded
files[1].urlhttps://www.sasbdb.org/media/intensities_files/SASDAX7.dat
files[1].path/data/saxsdb/sasbdb/entries/x7/sasdax7/source/SASDAX7.dat
files[1].size75963
files[1].sha256a5176a00f90d4365efecc1ac3f23d6c6264292f675300523e32abc3c93b35bc4
files[1].rolecurve
files[2].statusdownloaded
files[2].urlhttps://www.sasbdb.org/media/p_of_R_files/SASDAX7.out
files[2].path/data/saxsdb/sasbdb/entries/x7/sasdax7/source/SASDAX7.out
files[2].size33372
files[2].sha256646c4be89071cdf5179a2dbc52f3b12312a254ea9358db5fe666c8d5eb16a318
files[2].rolepddf
files[3].statusdownloaded
files[3].urlhttps://www.sasbdb.org/media/sascif/sascif_files/SASDAX7.sascif
files[3].path/data/saxsdb/sasbdb/entries/x7/sasdax7/source/SASDAX7.sascif
files[3].size117708
files[3].sha25676918b874df098ba9eacf4059a36b4a9538fe550d74af3c53292429080dffc2d
files[3].rolesascif
files[4].statusdownloaded
files[4].urlhttps://www.sasbdb.org/media/zip_directories/SASDAX7.zip
files[4].path/data/saxsdb/sasbdb/entries/x7/sasdax7/source/SASDAX7.zip
files[4].size30916
files[4].sha256d5adf3aea6d86dd1542e703e18b53177db5701f57918bbb867d1e725feb5648a
files[4].rolefull_entry_zip
files[4].zip_member_count2
files[4].zip_validationcentral_directory_readable
查看完整 summary.json 原文
{
  "code": "SASDAX7",
  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/nm",
  "project": {
    "title": "Structure and target interaction of a G-quadruplex RNA-aptamer.",
    "publication": {
      "title": "Structure and target interaction of a G-quadruplex RNA-aptamer.",
      "author_list": "Szameit K, Berg K, Kruspe S, Valentini E, Magbanua E, Kwiatkowski M, Chauvot de Beauchêne I, Krichel B, Schamoni K, Uetrecht C, Svergun DI, Schlüter H, Zacharias M, Hahn U",
      "journal": "RNA Biol",
      "doi": "10.1080/15476286.2016.1212151",
      "pmid": "27471797",
      "published_date": "2016 Oct 2"
    },
    "status": "released",
    "submitted_date": null,
    "released_date": "2016-09-08"
  },
  "pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDAX7.out",
  "intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDAX7.dat",
  "intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDAX7_dat_img.png",
  "intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDAX7_kratky_img.png",
  "pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDAX7_pofr_img.png",
  "intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDAX7_guinier_img.png",
  "sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDAX7.sascif",
  "experiment": {
    "instrument": {
      "detector": {
        "type": null,
        "name": "Pilatus 2M",
        "resolution": null
      },
      "name": "PETRA III",
      "city": "DESY; Hamburg",
      "country": "Germany",
      "beamline_name": "EMBL P12",
      "beam_geometry": null,
      "type_of_source": "X-ray synchrotron",
      "point_source": null,
      "line_collimation": null,
      "sample_path_length": null,
      "line_collimation_slitlength": null,
      "line_collimation_integrationwidth": null,
      "xray_energy": null,
      "beam_profile_ah": null,
      "beam_profile_al": null
    },
    "sample": {
      "molecule": [
        {
          "long_name": "AIR-3A G18U",
          "short_name": null,
          "sequence": "GGGGAGGCUGUGGUGAGUG",
          "organism": null,
          "uniprot_code": null,
          "uniprot_range_first": null,
          "uniprot_range_last": null,
          "oligomerization": "tetramer",
          "molecular_type": "RNA",
          "uniprot_sequence": null,
          "mw": 6.349,
          "total_mw": 25.396,
          "number_molecules": 4,
          "complex_state": false,
          "deuteration": null,
          "molecule_source": "biological",
          "molecule_description": null
        }
      ],
      "buffer": {
        "name": "water",
        "concentration_unit": null,
        "comment": null,
        "additive": null,
        "concentration": null,
        "pka": null,
        "ph": 7.5,
        "deuteration": null
      },
      "purity_method": null,
      "name": "Aptamer AIR-3A G18U",
      "ext_coefficient": null,
      "contrast": null,
      "specific_vol": null,
      "dry_vol": null,
      "absorbption": null,
      "deuteration": null,
      "mixture": null
    },
    "contributor": [
      {
        "affiliation": [
          {
            "short_name": "EMBL-Hamburg",
            "address": "Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany",
            "full_name": "European Molecular Biology Laboratory (EMBL) - Hamburg outstation",
            "webpage": "http://www.embl-hamburg.de/index.php"
          }
        ],
        "contributor_name": "Erica",
        "contributor_surname": "Valentini",
        "orcid": null
      }
    ],
    "concentration_method": null,
    "concentration_unit": null,
    "date": "2013-12-06",
    "storage_temperature": 10.0,
    "cell_temperature": 10.0,
    "exposure_time": 0.05,
    "number_of_frames": 20,
    "wavelength": 0.12,
    "sample_detector_distance": 3.1,
    "concentration_min": null,
    "concentration_max": 0.2,
    "sample_volume": null,
    "flow_rate": null,
    "s_min": 0.028,
    "s_max": 4.45,
    "total_exposure_time": null,
    "seccolumn": null
  },
  "fits": [],
  "estimated_volume_method": null,
  "pddf_software": "ATSAS GNOM",
  "pddf_software_version": null,
  "i0_calibration_standard": null,
  "description": null,
  "experiment_description": null,
  "tags": [],
  "intensity_unit": null,
  "experimental_mw": 24.0,
  "experimental_mw_error": null,
  "guinier_i0_mw": null,
  "guinier_i0_mw_error": null,
  "porod_mw": 24.0,
  "porod_mw_error": null,
  "pddf_i0": 3090.0,
  "pddf_i0_error": null,
  "guinier_i0": 3200.0,
  "guinier_i0_error": null,
  "pddf_rg": 2.5,
  "pddf_rg_error": null,
  "guinier_rg": 2.5,
  "guinier_rg_error": null,
  "pddf_dmax": 8.3,
  "pddf_dmax_error": null,
  "porod_volume": 24.0,
  "porod_volume_error": null,
  "estimated_volume": null,
  "estimated_volume_error": null,
  "guinier_point_first": 87,
  "guinier_point_last": 170,
  "pddf_point_first": null,
  "pddf_point_last": null,
  "i0_calibration_standard_data": null,
  "intensities_log_log_plot": "SASDAX7_datloglog_img.png",
  "symmetry": null,
  "last_modified": "2023-06-21T07:56:39.492710+02:00",
  "bragg_peak": []
}
查看完整 manifest.json 原文
{
  "code": "SASDAX7",
  "status": "success",
  "started_at": "2026-08-11T15:41:47.003367+00:00",
  "finished_at": "2026-08-11T15:41:56.152140+00:00",
  "source_last_modified": "2023-06-21T07:56:39.492710+02:00",
  "files": [
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/rest-api/entry/summary/SASDAX7/",
      "path": "/data/saxsdb/sasbdb/entries/x7/sasdax7/source/summary.json",
      "size": 5256,
      "sha256": "24c87a18e06e08123a9e28b965dc1fd72432c15c2561dd9da4c43b4dbd11bcc5"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/intensities_files/SASDAX7.dat",
      "path": "/data/saxsdb/sasbdb/entries/x7/sasdax7/source/SASDAX7.dat",
      "size": 75963,
      "sha256": "a5176a00f90d4365efecc1ac3f23d6c6264292f675300523e32abc3c93b35bc4",
      "role": "curve"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/p_of_R_files/SASDAX7.out",
      "path": "/data/saxsdb/sasbdb/entries/x7/sasdax7/source/SASDAX7.out",
      "size": 33372,
      "sha256": "646c4be89071cdf5179a2dbc52f3b12312a254ea9358db5fe666c8d5eb16a318",
      "role": "pddf"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDAX7.sascif",
      "path": "/data/saxsdb/sasbdb/entries/x7/sasdax7/source/SASDAX7.sascif",
      "size": 117708,
      "sha256": "76918b874df098ba9eacf4059a36b4a9538fe550d74af3c53292429080dffc2d",
      "role": "sascif"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/zip_directories/SASDAX7.zip",
      "path": "/data/saxsdb/sasbdb/entries/x7/sasdax7/source/SASDAX7.zip",
      "size": 30916,
      "sha256": "d5adf3aea6d86dd1542e703e18b53177db5701f57918bbb867d1e725feb5648a",
      "role": "full_entry_zip",
      "zip_member_count": 2,
      "zip_validation": "central_directory_readable"
    }
  ]
}