查看完整 summary.json 原文
{
"code": "SASDBN4",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/nm",
"project": {
"title": "Structural Characterization of Cell Wall and Plasma Membrane Proteins of Arabidopsis thaliana",
"publication": {
"title": "Structural Characterization of Cell Wall and Plasma Membrane Proteins of Arabidopsis thaliana",
"author_list": "Haifa El Kilani",
"journal": "University of Hamburg Dissertation",
"doi": null,
"pmid": null,
"published_date": "2016 June"
},
"status": "released",
"submitted_date": "2016-03-24",
"released_date": "2020-09-29"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDBN4.out",
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDBN4.dat",
"intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDBN4_dat_img.png",
"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDBN4_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDBN4_pofr_img.png",
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDBN4_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDBN4.sascif",
"experiment": {
"instrument": {
"detector": {
"type": null,
"name": "Pilatus 2M",
"resolution": null
},
"name": "PETRA III",
"city": "DESY; Hamburg",
"country": "Germany",
"beamline_name": "EMBL P12",
"beam_geometry": null,
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
"sample_path_length": null,
"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "Callose synthase",
"short_name": "AtGSLO5-IL",
"sequence": "MASRGSHHHHHHGAGDRGPEFELGTRGSCAVVGLFDHLGEIRDMGQLRLRFQFFASAIQFNLMPEEQLLNARGFGNKFKD\r\nGIHRLKLRYGFGRPFKKLESNQVEANKFALIWNEIILAFREEDIVSDREVELLELPKNSWDVTVIRWPCFLLCNELLLAL\r\nSQARELIDAPDKWLWHKICKNEYRRCAVVEAYDSIKHLLLSIIKVDTEEHSIITVFFQIINQSIQSEQFTKTFRVDLLPK\r\nIYETLQKLVGLVNDEETDSGRVVNVLQSLYEIATRQFFIEKKTTEQLSNEGLTPRDPASKLLFQNAIRLPDASNEDFYRQ\r\nVRRLHTILTSRDSMHSVPVNLEARRRIAFFSNSLFMNMPHAPQVEKMMAFSVLTPYYSEEVVYSKEQLRNETEDGISTLY\r\nYLQTIYADEWKNFKERMHREGIKTDSELWTTKLRDLRLWASYRGQTLARTVRGMMYYYRALKMLAFLDSASEMDIREGAQ\r\nELGSVRNLQGELGGQSDGFVSENDRSSLSRASSSVSTLYKGHEYGTALMKFTYVVACQIYGSQKAKKEPQAEEILYLMKQ\r\nNEALRIAYVDEVPAGRGETDYYSVLVKYDHQLEKEVEIFRVKLPGPVKLGEGKPENQNHAMIFTRGDAVQTIDMNQDSYF\r\nEEALKMRNLLQEYNHYHGIRKPTILGVRHAHGLSAWSHPQFEK",
"organism": "Arabidopsis thaliana",
"uniprot_code": "Q9ZT82",
"uniprot_range_first": 570,
"uniprot_range_last": 1208,
"oligomerization": "octamer",
"molecular_type": "protein",
"uniprot_sequence": "MSLRHRTVPPQTGRPLAAEAVGIEEEPYNIIPVNNLLADHPSLRFPEVRAAAAALKTVGD\nLRRPPYVQWRSHYDLLDWLALFFGFQKDNVRNQREHMVLHLANAQMRLSPPPDNIDSLDS\nAVVRRFRRKLLANYSSWCSYLGKKSNIWISDRNPDSRRELLYVGLYLLIWGEAANLRFMP\nECICYIFHNMASELNKILEDCLDENTGQPYLPSLSGENAFLTGVVKPIYDTIQAEIDESK\nNGTVAHCKWRNYDDINEYFWTDRCFSKLKWPLDLGSNFFKSRGKSVGKTGFVERRTFFYL\nYRSFDRLWVMLALFLQAAIIVAWEEKPDTSSVTRQLWNALKARDVQVRLLTVFLTWSGMR\nLLQAVLDAASQYPLVSRETKRHFFRMLMKVIAAAVWIVAFTVLYTNIWKQKRQDRQWSNA\nATTKIYQFLYAVGAFLVPEILALALFIIPWMRNFLEETNWKIFFALTWWFQGKSFVGRGL\nREGLVDNIKYSTFWIFVLATKFTFSYFLQVKPMIKPSKLLWNLKDVDYEWHQFYGDSNRF\nSVALLWLPVVLIYLMDIQIWYAIYSSIVGAVVGLFDHLGEIRDMGQLRLRFQFFASAIQF\nNLMPEEQLLNARGFGNKFKDGIHRLKLRYGFGRPFKKLESNQVEANKFALIWNEIILAFR\nEEDIVSDREVELLELPKNSWDVTVIRWPCFLLCNELLLALSQARELIDAPDKWLWHKICK\nNEYRRCAVVEAYDSIKHLLLSIIKVDTEEHSIITVFFQIINQSIQSEQFTKTFRVDLLPK\nIYETLQKLVGLVNDEETDSGRVVNVLQSLYEIATRQFFIEKKTTEQLSNEGLTPRDPASK\nLLFQNAIRLPDASNEDFYRQVRRLHTILTSRDSMHSVPVNLEARRRIAFFSNSLFMNMPH\nAPQVEKMMAFSVLTPYYSEEVVYSKEQLRNETEDGISTLYYLQTIYADEWKNFKERMHRE\nGIKTDSELWTTKLRDLRLWASYRGQTLARTVRGMMYYYRALKMLAFLDSASEMDIREGAQ\nELGSVRNLQGELGGQSDGFVSENDRSSLSRASSSVSTLYKGHEYGTALMKFTYVVACQIY\nGSQKAKKEPQAEEILYLMKQNEALRIAYVDEVPAGRGETDYYSVLVKYDHQLEKEVEIFR\nVKLPGPVKLGEGKPENQNHAMIFTRGDAVQTIDMNQDSYFEEALKMRNLLQEYNHYHGIR\nKPTILGVREHIFTGSVSSLAWFMSAQETSFVTLGQRVLANPLKVRMHYGHPDVFDRFWFL\nSRGGISKASRVINISEDIFAGFNCTLRGGNVTHHEYIQVGKGRDVGLNQISMFEAKVASG\nNGEQVLSRDVYRLGHRLDFFRMLSFFYTTVGFFFNTMMVILTVYAFLWGRVYLALSGVEK\nSALADSTDTNAALGVILNQQFIIQLGLFTALPMIVEWSLEEGFLLAIWNFIRMQIQLSAV\nFYTFSMGTRAHYFGRTILHGGAKYRATGRGFVVEHKGFTENYRLYARSHFVKAIELGLIL\nIVYASHSPIAKDSLIYIAMTITSWFLVISWIMAPFVFNPSGFDWLKTVYDFEDFMNWIWY\nQGRISTKSEQSWEKWWYEEQDHLRNTGKAGLFVEIILVLRFFFFQYGIVYQLKIANGSTS\nLFVYLFSWIYIFAIFVLFLVIQYARDKYSAKAHIRYRLVQFLLIVLAILVIVALLEFTHF\nSFIDIFTSLLAFIPTGWGILLIAQTQRKWLKNYTIFWNAVVSVARMYDILFGILIMVPVA\nFLSWMPGFQSMQTRILFNEAFSRGLRIMQIVTGKKSKGDV",
"mw": 79.092,
"total_mw": 632.736,
"number_molecules": 8,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": null
}
],
"buffer": {
"name": "Tris, 50 mM NaCl",
"concentration_unit": null,
"comment": null,
"additive": "50 mM NaCl",
"concentration": null,
"pka": null,
"ph": 7.3,
"deuteration": null
},
"purity_method": null,
"name": "Callose synthase",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": false
},
"contributor": [
{
"affiliation": [
{
"short_name": null,
"address": "Hamburg, Germany",
"full_name": "University of Hamburg",
"webpage": "https://www.uni-hamburg.de/"
}
],
"contributor_name": "Haifa",
"contributor_surname": "El Kilani",
"orcid": null
},
{
"affiliation": [
{
"short_name": "EMBL-Hamburg",
"address": "Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany",
"full_name": "European Molecular Biology Laboratory (EMBL) - Hamburg outstation",
"webpage": "http://www.embl-hamburg.de/index.php"
}
],
"contributor_name": "Al",
"contributor_surname": "Kikhney",
"orcid": "https://orcid.org/0000-0003-1321-3956"
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2015-06-02",
"storage_temperature": 20.0,
"cell_temperature": 10.0,
"exposure_time": 0.05,
"number_of_frames": 18,
"wavelength": 0.12,
"sample_detector_distance": 3.1,
"concentration_min": null,
"concentration_max": 1.0,
"sample_volume": null,
"flow_rate": null,
"s_min": 0.027,
"s_max": 4.801,
"total_exposure_time": null,
"seccolumn": null
},
"fits": [
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDBN4_fit1_model1_img.png",
"software": "CORAL",
"pdb_link": [],
"model_title": null,
"type_of_model": "mix",
"software_version": "2.7.1",
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDBN4_fit1_model1.pdb",
"model_mw": null,
"bead_radius": 1.9,
"log": "https://www.sasbdb.org/media/log_files/ca305-2_9ZZcEX3.log",
"symmetry": "P8",
"comment": null,
"user": 4
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDBN4_fit1_fixed_fit_img.png",
"software": null,
"chi_square_value": 1.055,
"p_value": 0.9479,
"fit_residual_plot": "SASDBN4_fit1_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDBN4_fit1.fit",
"fit_log": null,
"software_version": null,
"description": null
},
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDBN4_fit2_model1_img.png",
"software": "DAMMIF",
"pdb_link": [],
"model_title": null,
"type_of_model": "dummy",
"software_version": "r6669",
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDBN4_fit2_model1.pdb",
"model_mw": 573.0,
"bead_radius": 6.3,
"log": "https://www.sasbdb.org/media/log_files/305_9.log",
"symmetry": "P8",
"comment": "",
"user": 4
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDBN4_fit2_fixed_fit_img.png",
"software": null,
"chi_square_value": 1.278,
"p_value": 0.0504,
"fit_residual_plot": "SASDBN4_fit2_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDBN4_fit2.fir",
"fit_log": null,
"software_version": null,
"description": null
}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": "GNOM 5",
"i0_calibration_standard": null,
"description": null,
"experiment_description": null,
"tags": [],
"intensity_unit": "arbitrary",
"experimental_mw": 623.0,
"experimental_mw_error": null,
"guinier_i0_mw": null,
"guinier_i0_mw_error": null,
"porod_mw": 646.0,
"porod_mw_error": null,
"pddf_i0": null,
"pddf_i0_error": null,
"guinier_i0": 25374.1,
"guinier_i0_error": null,
"pddf_rg": 7.94,
"pddf_rg_error": null,
"guinier_rg": 7.99,
"guinier_rg_error": 0.34,
"pddf_dmax": 30.0,
"pddf_dmax_error": 3.0,
"porod_volume": 1033.34,
"porod_volume_error": null,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 12,
"guinier_point_last": 52,
"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDBN4_datloglog_img.png",
"symmetry": null,
"last_modified": "2023-06-21T07:56:39.492710+02:00",
"bragg_peak": []
}
查看完整 manifest.json 原文
{
"code": "SASDBN4",
"status": "success",
"started_at": "2026-08-11T14:27:13.792282+00:00",
"finished_at": "2026-08-11T14:27:26.058410+00:00",
"source_last_modified": "2023-06-21T07:56:39.492710+02:00",
"files": [
{
"status": "downloaded",
"url": "https://www.sasbdb.org/rest-api/entry/summary/SASDBN4/",
"path": "/data/saxsdb/sasbdb/entries/n4/sasdbn4/source/summary.json",
"size": 10279,
"sha256": "e51f269c8ada123ca61761d266d75800fafb3da3d8dd878da877e30910bd91af"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/intensities_files/SASDBN4.dat",
"path": "/data/saxsdb/sasbdb/entries/n4/sasdbn4/source/SASDBN4.dat",
"size": 82857,
"sha256": "85638d7b2d40da1f215a6140ef8d815ea902a84022cc2787e91ca94b6c150036",
"role": "curve"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/p_of_R_files/SASDBN4.out",
"path": "/data/saxsdb/sasbdb/entries/n4/sasdbn4/source/SASDBN4.out",
"size": 47667,
"sha256": "b44aab89ae40c23acdeb1534a5e4d44b7270b3b26409c63a4961cf9a90b64032",
"role": "pddf"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDBN4.sascif",
"path": "/data/saxsdb/sasbdb/entries/n4/sasdbn4/source/SASDBN4.sascif",
"size": 3661750,
"sha256": "5807ad862fd3040e24be1d3198a28d4dd985dbfc9aad089b72d07377ced29e1b",
"role": "sascif"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/zip_directories/SASDBN4.zip",
"path": "/data/saxsdb/sasbdb/entries/n4/sasdbn4/source/SASDBN4.zip",
"size": 572155,
"sha256": "00e7c8391d6f9ab663d05fc045819c3beadcb41ba3f918aef468c1cc71e9cfa7",
"role": "full_entry_zip",
"zip_member_count": 6,
"zip_validation": "central_directory_readable"
}
]
}