SASDBV4

Vaccinia virus MVA F1L antiapoptotic Bcl-2 viral protein

Data type: SASBDB experimental data Status: Published Curve type: Single concentration Last updated: 2019-12-06T13:07:15.624532+01:00
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1. Samples, Components and Experimental Conditions Sample & Experiment

Sample 1 · Vaccinia virus MVA F1L antiapoptotic Bcl-2 viral protein

Concentration0.12 – 3.6 mg/mlBuffer / pH25 mM HEPES 150 mM NaCl 5 mM DTT / 7.5
Experimental temperature— Facility / beamlineAustralian Synchrotron / SAXS/WAXS
Wavelength— nmExposure1.0 s × 18

Molecular Components

ComponentType / organismUniProt and ConstructOligomeric StateMolecular weight
MVA F1L antiapoptotic Bcl-2 viral protein
View sequence
MGSSHHHHHHSQDPMLSMFMCNNIVDYVDGIVQDIEDEASNNVDHDYVYPLPENMVYRFDKSTNILDYLSTERDHVMMAVRYYMSKQRLDDLYRQLPTKTRSYIDIINIYCDKVSNDYNRDMNIMYDMASTKSFTVYDINNEVNTILMDNKGLGVRLATISFITELGRRCMNPVKTIKMFTLLSHTICDDCFVDYITDISPPDNTIPNTSTREYLK
proteinVaccinia virusO571731–202dimerMolecule count 225.291 kDa

Experimental Curves

CurvePoints / columnsq rangeUncertainty qualityNegative-intensity pointsSource file
1776[3]0.196003–5.15979 1/nmHas uncertainty columnMissing 00sasbdb/entries/v4/sasdbv4/source/SASDBV4.dat
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2. Measurements Reported by SASBDB Reported Results

MetricMethodValueUncertaintyUnit
dmaxP(r)16.2—nm
i0Guinier0.0735086——
mwExperimental51.7—kDa
porod_volumePorod74.36—nm³
rgGuinier3.41—nm
rgP(r)3.68—nm

These values are reported by SASBDB; SAXSdb did not recalculate them from the experimental curve.

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3. Source Fits and Models Source Fits & Models

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4. Source File Index Source Files

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5. Experiment Description and Publication Experiment & Publication

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6. Complete Source Record Complete Source Record

The following content comes directly from the SASBDB entry. Missing values are shown as “—”; SAXSdb does not infer undeclared units.

Open the original SASBDB entry

Buffer and Sample Properties

Buffer name25 mM HEPES 150 mM NaCl 5 mM DTTBuffer concentration—
pH7.5Additives—
Buffer description—
Purity measurement method—Extinction coefficient—
Absorbance—Scattering contrast—
Specific volume / dry volume— / —Mixture / deuteration— / —

Acquisition Conditions and Instrument

Measurement date2016-04-15Storage / measurement temperature20.0 / —
Exposure time1.0Frames18
Wavelength—Sample-to-detector distance1.6
SourceX-ray synchrotronDetectorPilatus 1M
Facility / beamlineAustralian Synchrotron / SAXS/WAXS · Melbourne, Australia
q range0.196 – 5.16Sample volume / flow rate— / —

Original SASBDB Plots

Experimental I(q)
Experimental I(q)
Experimental I(q), log-log
Experimental I(q), log-log
Guinier plot
Guinier plot
Kratky plot
Kratky plot
P(r) plot
P(r) plot

Downloadable Files

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All source fields (unfiltered)

Every source field is expanded here, including empty values, list members and fields already shown above.

summary.json:179 field values
Field pathRaw value
codeSASDBV4
statusPublished
type_of_curveSingle concentration
angular_unit1/nm
project.titleThe N Terminus of the Vaccinia Virus Protein F1L Is an Intrinsically Unstructured Region That Is Not Involved in Apoptosis Regulation.
project.publication.titleThe N Terminus of the Vaccinia Virus Protein F1L Is an Intrinsically Unstructured Region That Is Not Involved in Apoptosis Regulation.
project.publication.author_listCaria S, Marshall B, Burton RL, Campbell S, Pantaki-Eimany D, Hawkins CJ, Barry M, Kvansakul M
project.publication.journalJ Biol Chem
project.publication.doi10.1074/jbc.M116.726851
project.publication.pmid27151220
project.publication.published_date2016 Jul 8
project.statusreleased
project.submitted_date2016-04-11
project.released_date2016-09-22
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experiment.instrument.nameAustralian Synchrotron
experiment.instrument.cityMelbourne
experiment.instrument.countryAustralia
experiment.instrument.beamline_nameSAXS/WAXS
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experiment.sample.molecule[0].long_nameMVA F1L antiapoptotic Bcl-2 viral protein
experiment.sample.molecule[0].short_nameMVA F1L (Protein F1)
experiment.sample.molecule[0].sequenceMGSSHHHHHHSQDPMLSMFMCNNIVDYVDGIVQDIEDEASNNVDHDYVYPLPENMVYRFDKSTNILDYLSTERDHVMMAVRYYMSKQRLDDLYRQLPTKTRSYIDIINIYCDKVSNDYNRDMNIMYDMASTKSFTVYDINNEVNTILMDNKGLGVRLATISFITELGRRCMNPVKTIKMFTLLSHTICDDCFVDYITDISPPDNTIPNTSTREYLK
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experiment.sample.molecule[0].uniprot_codeO57173
experiment.sample.molecule[0].uniprot_range_first1
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experiment.contributor[0].affiliation[0].addressKirrawee DC, NSW 2232, Australia
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experiment_descriptionSynchrotron SAXS data from solutions of Vaccinia virus MVA F1L antiapoptotic Bcl-2 viral protein in 25 mM HEPES, 150 mM NaCl, 5 mM DTT, pH 7.5 were collected on the SAXS/WAXS camera on the storage ring Australian Synchrotron (Melbourne, Australia) using a Pilatus 1M detector at a sample-detector distance of 1.6 m (I(s) vs s = 4π sin θ/λ, where 2θ is the scattering angle). Solute concentrations ranging between 0.1 and 3.6 mg/ml were measured. 18 successive 1 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted. The low angle data collected were obtained from a single concentration scattering curve.
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last_modified2019-12-06T13:07:15.624532+01:00
bragg_peak[]
manifest.json:36 field values
Field pathRaw value
codeSASDBV4
statussuccess
started_at2026-08-11T14:32:03.922398+00:00
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View the complete summary.json source
{
  "code": "SASDBV4",
  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/nm",
  "project": {
    "title": "The N Terminus of the Vaccinia Virus Protein F1L Is an Intrinsically Unstructured Region That Is Not Involved in Apoptosis Regulation.",
    "publication": {
      "title": "The N Terminus of the Vaccinia Virus Protein F1L Is an Intrinsically Unstructured Region That Is Not Involved in Apoptosis Regulation.",
      "author_list": "Caria S, Marshall B, Burton RL, Campbell S, Pantaki-Eimany D, Hawkins CJ, Barry M, Kvansakul M",
      "journal": "J Biol Chem",
      "doi": "10.1074/jbc.M116.726851",
      "pmid": "27151220",
      "published_date": "2016 Jul 8"
    },
    "status": "released",
    "submitted_date": "2016-04-11",
    "released_date": "2016-09-22"
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          "long_name": "MVA F1L antiapoptotic Bcl-2 viral protein",
          "short_name": "MVA F1L (Protein F1)",
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