查看完整 summary.json 原文
{
"code": "SASDC53",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/nm",
"project": {
"title": "The Two-State Prehensile Tail of the Antibacterial Toxin Colicin N.",
"publication": {
"title": "The Two-State Prehensile Tail of the Antibacterial Toxin Colicin N.",
"author_list": "Johnson CL, Solovyova AS, Hecht O, Macdonald C, Waller H, Grossmann JG, Moore GR, Lakey JH",
"journal": "Biophys J",
"doi": "10.1016/j.bpj.2017.08.030",
"pmid": "29045862",
"published_date": "2017 Oct 17"
},
"status": "released",
"submitted_date": "2017-04-26",
"released_date": "2017-10-25"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDC53.out",
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDC53.dat",
"intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDC53_dat_img.png",
"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDC53_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDC53_pofr_img.png",
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDC53_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDC53.sascif",
"experiment": {
"instrument": {
"detector": {
"type": "Dectris",
"name": "Pilatus 1M",
"resolution": 172.0
},
"name": "ESRF",
"city": "Grenoble",
"country": "France",
"beamline_name": "BM29",
"beam_geometry": "",
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
"sample_path_length": null,
"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "Colicin N Translocation domain",
"short_name": "ColN-T",
"sequence": "MGSNGADNAHNNAFGGGKNPGIGNTSGAGSNGSASSNRGNSNGWSWSNKPHKNDGFHSDGSYHITFHGDNNSKPKPGGNSGNRGNNGDGASSHHHHHH",
"organism": "Escherichia coli",
"uniprot_code": "P08083",
"uniprot_range_first": 1,
"uniprot_range_last": 90,
"oligomerization": "monomer",
"molecular_type": "protein",
"uniprot_sequence": "MGSNGADNAHNNAFGGGKNPGIGNTSGAGSNGSASSNRGNSNGWSWSNKPHKNDGFHSDG\nSYHITFHGDNNSKPKPGGNSGNRGNNGDGASAKVGEITITPDNSKPGRYISSNPEYSLLA\nKLIDAESIKGTEVYTFHTRKGQYVKVTVPDSNIDKMRVDYVNWKGPKYNNKLVKRFVSQF\nLLFRKEEKEKNEKEALLKASELVSGMGDKLGEYLGVKYKNVAKEVANDIKNFHGRNIRSY\nNEAMASLNKVLANPKMKVNKSDKDAIVNAWKQVNAKDMANKIGNLGKAFKVADLAIKVEK\nIREKSIEGYNTGNWGPLLLEVESWIIGGVVAGVAISLFGAVLSFLPISGLAVTALGVIGI\nMTISYLSSFIDANRVSNINNIISSVIR",
"mw": 9.965,
"total_mw": 9.965,
"number_molecules": 1,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": null
}
],
"buffer": {
"name": "50 mM Na-Phosphate 300 mM NaCl",
"concentration_unit": null,
"comment": null,
"additive": null,
"concentration": null,
"pka": null,
"ph": 7.6,
"deuteration": null
},
"purity_method": null,
"name": "Colicin N Translocation domain",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": null,
"address": "Newcastle, UK",
"full_name": "Newcastle University",
"webpage": "http://www.ncl.ac.uk"
}
],
"contributor_name": "Alex",
"contributor_surname": "Solovyova",
"orcid": null
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2012-06-29",
"storage_temperature": 4.0,
"cell_temperature": 4.0,
"exposure_time": 2.0,
"number_of_frames": 10,
"wavelength": 0.15,
"sample_detector_distance": 2.85,
"concentration_min": 0.4,
"concentration_max": 6.3,
"sample_volume": null,
"flow_rate": null,
"s_min": 0.032,
"s_max": 4.548,
"total_exposure_time": null,
"seccolumn": null
},
"fits": [
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDC53_fit1_model1_img.png",
"software": "EOM/GAJOE",
"pdb_link": [],
"model_title": null,
"type_of_model": "atomic",
"software_version": "",
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDC53_fit1_model1.pdb",
"model_mw": 10.04,
"bead_radius": 1.9,
"log": "https://www.sasbdb.org/media/log_files/GA003.log",
"symmetry": "",
"comment": "",
"user": 213
},
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDC53_fit1_model2_img.png",
"software": "EOM/GAJOE",
"pdb_link": [],
"model_title": null,
"type_of_model": "atomic",
"software_version": "",
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDC53_fit1_model2.pdb",
"model_mw": 9.949,
"bead_radius": 1.9,
"log": "https://www.sasbdb.org/media/log_files/GA003_9tEwzuh.log",
"symmetry": "",
"comment": "",
"user": 213
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDC53_fit1_fixed_fit_img.png",
"software": "EOM/GAJOE",
"chi_square_value": 1.5,
"p_value": 0.000494,
"fit_residual_plot": "fit4columns817_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDC53_fit1.fit",
"fit_log": "https://www.sasbdb.org/media/fitting_files/log_files/GA003.log",
"software_version": "",
"description": null
}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": "5.0",
"i0_calibration_standard": null,
"description": "The results obtained from the bayesapp estimation of distribution functions from small-angle scattering data (http://www.bayesapp.org/) are included in the full entry zip archive.",
"experiment_description": "Synchrotron SAXS data from solutions of Colicin N Translocation domain in 50 mM Na-Phosphate 300 mM NaCl, pH 7.6 were collected on the BM29 beam line at the ESRF (Grenoble, France) using a Pilatus 1M detector at a sample-detector distance of 2.9 m and at a wavelength of λ = 0.15 nm (I(s) vs s, where s = 4πsinθ/λ and 2θ is the scattering angle). Solute concentrations ranging between 0.4 and 6.3 mg/ml were measured at 4°C. 10 successive 2 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted and the different curves were scaled for protein concentration.",
"tags": [
"idp"
],
"intensity_unit": null,
"experimental_mw": 10.0,
"experimental_mw_error": null,
"guinier_i0_mw": 18.5,
"guinier_i0_mw_error": 0.88,
"porod_mw": null,
"porod_mw_error": null,
"pddf_i0": 23.4,
"pddf_i0_error": 0.0777,
"guinier_i0": 22.95,
"guinier_i0_error": 0.044,
"pddf_rg": 2.93,
"pddf_rg_error": 0.02,
"guinier_rg": 2.76,
"guinier_rg_error": 0.15,
"pddf_dmax": 11.42,
"pddf_dmax_error": 0.25,
"porod_volume": 21.82,
"porod_volume_error": null,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 53,
"guinier_point_last": 110,
"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDC53_datloglog_img.png",
"symmetry": null,
"last_modified": "2021-08-18T17:26:22.657806+02:00",
"bragg_peak": []
}查看完整 manifest.json 原文
{
"code": "SASDC53",
"status": "success",
"started_at": "2026-08-11T13:52:35.522324+00:00",
"finished_at": "2026-08-11T13:52:48.074412+00:00",
"source_last_modified": "2021-08-18T17:26:22.657806+02:00",
"files": [
{
"status": "downloaded",
"url": "https://www.sasbdb.org/rest-api/entry/summary/SASDC53/",
"path": "/data/saxsdb/sasbdb/entries/53/sasdc53/source/summary.json",
"size": 8186,
"sha256": "616d75c18b09cf742eef8e0172c32543d8e57fd6df8209db37ce5dae85147b5d"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/intensities_files/SASDC53.dat",
"path": "/data/saxsdb/sasbdb/entries/53/sasdc53/source/SASDC53.dat",
"size": 29979,
"sha256": "2bd54ee084e4bc21f162fa4e7099e82b0ddcaf106e6756e6dec87646154c3df3",
"role": "curve"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/p_of_R_files/SASDC53.out",
"path": "/data/saxsdb/sasbdb/entries/53/sasdc53/source/SASDC53.out",
"size": 87320,
"sha256": "5768a725cf669af840728823e009be5507f6bd09d225e74c665cd399838f8f25",
"role": "pddf"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDC53.sascif",
"path": "/data/saxsdb/sasbdb/entries/53/sasdc53/source/SASDC53.sascif",
"size": 323000,
"sha256": "08223ec2c6ac57397ca506e64558d8c9bc105a5e6c4663bcb7b096a888c68df4",
"role": "sascif"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/zip_directories/SASDC53.zip",
"path": "/data/saxsdb/sasbdb/entries/53/sasdc53/source/SASDC53.zip",
"size": 97632,
"sha256": "e4f11ee9b00222fe25c8d2ef42a3b4cbd16c34482fe44f21b762b7dc5e6834ab",
"role": "full_entry_zip",
"zip_member_count": 8,
"zip_validation": "central_directory_readable"
}
]
}
