SASDCM8

Mo-insertase domain Cnx1E from Arabidopsis thaliana

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Merged 最后更新:2021-02-08T20:12:23.492874+01:00
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1. 样品、组分与实验条件 Sample & Experiment

样品 1 · Mo-insertase domain Cnx1E from Arabidopsis thaliana

浓度1.65 – 12.5 缓冲液 / pH20 mM Hepes/KOH, 150 mM NaCl, 1 mM EDTA, 2 % (v/v) glycerol / 7.4
实验温度20.0 设备 / 束线ESRF / ID14-3
波长0.09919 nm曝光1.0 s × 10

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
Molybdopterin biosynthesis protein CNX1
查看序列
MSRGSMEGQGCCGGGGGKTEMIPTEEALRIVFGVSKRLPPVIVSLYEALGKVLAEDIRAPDPLPPYPASVKDGYAVVASDGPGEYPVITESRAGNDGLGVTVTPGTVAYVTTGGPIPDGADAVVQVEDTKVIGDVSTESKRVKILIQTKKGTDIRRVGCDIEKDATVLTTGERIGASEIGLLATAGVTMVKVYPMPIVAILSTGDELVEPTAGTLGRGQIRDSNRAMLVAAVMQQQCKVVDLGIVRDDRKELEKVLDEAVSSGVDIILTSGGVSMGDRDFVKPLLEEKGKVYFSKVLMKPGKPLTFAEIRAKPTESMLGKTVLAFGLPGNPVSCLVCFNIFVVPTIRQLAGWTSPHPLRVRLRLQEPIKSDPIRPEFHRAIIKWKDNDGSGTPGFVAESTGHQMSSRLLSMRSANALLELPATGNVLSAGSSVSAIIVSDISAFSIDKKASLSEPGSTSGGSAWSHPQFEK
proteinArabidopsis thalianaQ390541–451dimer分子数 249.7 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
11039[3]0.0510577–4.97517 1/nm含误差列缺失 03sasbdb/entries/m8/sasdcm8/source/SASDCM8.dat
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2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)15.0—nm
i0Guinier68.970.044arbitrary
i0P(r)69.920.029arbitrary
mwExperimental99.0—kDa
mwPorod105.9—kDa
porod_volumePorod180.59—nm³
rgGuinier3.640.06nm
rgP(r)3.8050.004nm

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

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3. 来源拟合与模型 Source Fits & Models

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4. 来源文件索引 Source Files

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5. 实验说明与论文 Experiment & Publication

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6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称20 mM Hepes/KOH, 150 mM NaCl, 1 mM EDTA, 2 % (v/v) glycerol缓冲液浓度—
pH7.4添加剂—
缓冲液说明—
纯度测定方法—消光系数—
吸收值—散射对比度—
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2015-02-05储存 / 测量温度4.0 / 20.0
曝光时间1.0帧数10
波长0.09919样品-探测器距离2.864
光源X-ray synchrotron探测器Pilatus 1M
机构 / 束线ESRF / ID14-3 · Grenoble, France
q 范围0.051 – 4.975样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可下载文件

类别文件状态大小校验值下载与查看
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full_entry_zipsasbdb/entries/m8/sasdcm8/source/SASDCM8.zipdownloaded154643098688919fd829aad05eff2a1508af9274cf1077896e229c944f0ca9d60f9eac下载查看原文件源站
pddfsasbdb/entries/m8/sasdcm8/source/SASDCM8.outdownloaded30891ee0745f48b9794ac3303df2c4158a0adc62d5733bf6fa38e8e21dbd362005c34下载查看原文件源站
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summarysasbdb/entries/m8/sasdcm8/source/summary.jsondownloaded78295ec2ff63b7cc01c8ce6b619b4726d0d3c7423f729c0efda719db8feed7a529e8下载查看原文件源站
curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(4 项)
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:159 个字段值
字段路径原始值
codeSASDCM8
statusPublished
type_of_curveMerged
angular_unit1/nm
project.titleDimerization of the plant molybdenum insertase Cnx1E is required for synthesis of the molybdenum cofactor.
project.publication.titleDimerization of the plant molybdenum insertase Cnx1E is required for synthesis of the molybdenum cofactor.
project.publication.author_listKrausze J, Probst C, Curth U, Reichelt J, Saha S, Schafflick D, Heinz DW, Mendel RR, Kruse T
project.publication.journalBiochem J
project.publication.doi10.1042/BCJ20160846
project.publication.pmid27803248
project.publication.published_date2017 Jan 1
project.statusreleased
project.submitted_date2017-10-26
project.released_date2021-02-08
pddf_datahttps://www.sasbdb.org/media/p_of_R_files/SASDCM8.out
intensities_datahttps://www.sasbdb.org/media/intensities_files/SASDCM8.dat
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experiment.instrument.detector.typeDectris
experiment.instrument.detector.namePilatus 1M
experiment.instrument.detector.resolution172.0
experiment.instrument.nameESRF
experiment.instrument.cityGrenoble
experiment.instrument.countryFrance
experiment.instrument.beamline_nameID14-3
experiment.instrument.beam_geometry
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourceTrue
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameMolybdopterin biosynthesis protein CNX1
experiment.sample.molecule[0].short_nameCnx1E
experiment.sample.molecule[0].sequenceMSRGSMEGQGCCGGGGGKTEMIPTEEALRIVFGVSKRLPPVIVSLYEALGKVLAEDIRAP DPLPPYPASVKDGYAVVASDGPGEYPVITESRAGNDGLGVTVTPGTVAYVTTGGPIPDGA DAVVQVEDTKVIGDVSTESKRVKILIQTKKGTDIRRVGCDIEKDATVLTTGERIGASEIG LLATAGVTMVKVYPMPIVAILSTGDELVEPTAGTLGRGQIRDSNRAMLVAAVMQQQCKVV DLGIVRDDRKELEKVLDEAVSSGVDIILTSGGVSMGDRDFVKPLLEEKGKVYFSKVLMKP GKPLTFAEIRAKPTESMLGKTVLAFGLPGNPVSCLVCFNIFVVPTIRQLAGWTSPHPLRV RLRLQEPIKSDPIRPEFHRAIIKWKDNDGSGTPGFVAESTGHQMSSRLLSMRSANALLEL PATGNVLSAGSSVSAIIVSDISAFSIDKKASLSEPGSTSGGSAWSHPQFEK
experiment.sample.molecule[0].organismArabidopsis thaliana
experiment.sample.molecule[0].uniprot_codeQ39054
experiment.sample.molecule[0].uniprot_range_first1
experiment.sample.molecule[0].uniprot_range_last451
experiment.sample.molecule[0].oligomerizationdimer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMEGQGCCGGGGGKTEMIPTEEALRIVFGVSKRLPPVIVSLYEALGKVLAEDIRAPDPLPP YPASVKDGYAVVASDGPGEYPVITESRAGNDGLGVTVTPGTVAYVTTGGPIPDGADAVVQ VEDTKVIGDVSTESKRVKILIQTKKGTDIRRVGCDIEKDATVLTTGERIGASEIGLLATA GVTMVKVYPMPIVAILSTGDELVEPTAGTLGRGQIRDSNRAMLVAAVMQQQCKVVDLGIV RDDRKELEKVLDEAVSSGVDIILTSGGVSMGDRDFVKPLLEEKGKVYFSKVLMKPGKPLT FAEIRAKPTESMLGKTVLAFGLPGNPVSCLVCFNIFVVPTIRQLAGWTSPHPLRVRLRLQ EPIKSDPIRPEFHRAIIKWKDNDGSGTPGFVAESTGHQMSSRLLSMRSANALLELPATGN VLSAGSSVSAIIVSDISAFSIDKKASLSEPGSIRKEKKYDEVPGPEYKVAILTVSDTVSA GAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLG GTGFTPRDVTPEATKKVIERETPGLLFVMMQESLKITPFAMLSRSAAGIRGSTLIINMPG NPNAVAECMEALLPALKHALKQIKGDKREKHPKHIPHAEATLPTDTWDQSYKSAYETGEK KEEAGCSCTH
experiment.sample.molecule[0].mw49.7
experiment.sample.molecule[0].total_mw99.4
experiment.sample.molecule[0].number_molecules2
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionnull
experiment.sample.buffer.name20 mM Hepes/KOH, 150 mM NaCl, 1 mM EDTA, 2 % (v/v) glycerol
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.4
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameMo-insertase domain Cnx1E from Arabidopsis thaliana
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_namenull
experiment.contributor[0].affiliation[0].addressBraunschweig, Germany
experiment.contributor[0].affiliation[0].full_nameBraunschweig University of Technology
experiment.contributor[0].affiliation[0].webpagehttps://www.tu-braunschweig.de/
experiment.contributor[0].contributor_nameJoern
experiment.contributor[0].contributor_surnameKrausze
experiment.contributor[0].orcidnull
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2015-02-05
experiment.storage_temperature4.0
experiment.cell_temperature20.0
experiment.exposure_time1.0
experiment.number_of_frames10
experiment.wavelength0.09919
experiment.sample_detector_distance2.864
experiment.concentration_min1.65
experiment.concentration_max12.5
experiment.sample_volumenull
experiment.flow_ratenull
experiment.s_min0.051
experiment.s_max4.975
experiment.total_exposure_timenull
experiment.seccolumnnull
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fits[0].models[0].softwarePDB (Protein Data Bank)
fits[0].models[0].pdb_link[0].pdb_code5g2r
fits[0].models[0].pdb_link[0].ext_code5G2R
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fits[0].models[0].bead_radius1.9
fits[0].models[0].lognull
fits[0].models[0].symmetryC2
fits[0].models[0].commentC2 symmetry generated from crystallographic symmetry
fits[0].models[0].user247
fits[0].fit_unit1/A
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fits[0].softwareCRYSOL
fits[0].chi_square_value39.748
fits[0].p_value0.0
fits[0].fit_residual_plotfit4columns1144_fitresiduals_img.png
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fits[0].software_version2.8.2
fits[0].descriptionnull
estimated_volume_methodnull
pddf_softwareATSAS GNOM
pddf_software_version4.6
i0_calibration_standardnull
descriptionnull
experiment_descriptionnull
tags[]
intensity_unitarbitrary
experimental_mw99.0
experimental_mw_errornull
guinier_i0_mwnull
guinier_i0_mw_errornull
porod_mw105.9
porod_mw_errornull
pddf_i069.92
pddf_i0_error0.029
guinier_i068.97
guinier_i0_error0.044
pddf_rg3.805
pddf_rg_error0.004
guinier_rg3.64
guinier_rg_error0.06
pddf_dmax15.0
pddf_dmax_errornull
porod_volume180.59
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_first23
guinier_point_last54
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDCM8_datloglog_img.png
symmetrynull
last_modified2021-02-08T20:12:23.492874+01:00
bragg_peak[]
manifest.json:36 个字段值
字段路径原始值
codeSASDCM8
statussuccess
started_at2026-08-11T15:56:11.895168+00:00
finished_at2026-08-11T15:56:20.649101+00:00
source_last_modified2021-02-08T20:12:23.492874+01:00
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查看完整 summary.json 原文
{
  "code": "SASDCM8",
  "status": "Published",
  "type_of_curve": "Merged",
  "angular_unit": "1/nm",
  "project": {
    "title": "Dimerization of the plant molybdenum insertase Cnx1E is required for synthesis of the molybdenum cofactor.",
    "publication": {
      "title": "Dimerization of the plant molybdenum insertase Cnx1E is required for synthesis of the molybdenum cofactor.",
      "author_list": "Krausze J, Probst C, Curth U, Reichelt J, Saha S, Schafflick D, Heinz DW, Mendel RR, Kruse T",
      "journal": "Biochem J",
      "doi": "10.1042/BCJ20160846",
      "pmid": "27803248",
      "published_date": "2017 Jan 1"
    },
    "status": "released",
    "submitted_date": "2017-10-26",
    "released_date": "2021-02-08"
  },
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        "resolution": 172.0
      },
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      "country": "France",
      "beamline_name": "ID14-3",
      "beam_geometry": "",
      "type_of_source": "X-ray synchrotron",
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    "sample": {
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          "long_name": "Molybdopterin biosynthesis protein CNX1",
          "short_name": "Cnx1E",
          "sequence": "MSRGSMEGQGCCGGGGGKTEMIPTEEALRIVFGVSKRLPPVIVSLYEALGKVLAEDIRAP\r\nDPLPPYPASVKDGYAVVASDGPGEYPVITESRAGNDGLGVTVTPGTVAYVTTGGPIPDGA\r\nDAVVQVEDTKVIGDVSTESKRVKILIQTKKGTDIRRVGCDIEKDATVLTTGERIGASEIG\r\nLLATAGVTMVKVYPMPIVAILSTGDELVEPTAGTLGRGQIRDSNRAMLVAAVMQQQCKVV\r\nDLGIVRDDRKELEKVLDEAVSSGVDIILTSGGVSMGDRDFVKPLLEEKGKVYFSKVLMKP\r\nGKPLTFAEIRAKPTESMLGKTVLAFGLPGNPVSCLVCFNIFVVPTIRQLAGWTSPHPLRV\r\nRLRLQEPIKSDPIRPEFHRAIIKWKDNDGSGTPGFVAESTGHQMSSRLLSMRSANALLEL\r\nPATGNVLSAGSSVSAIIVSDISAFSIDKKASLSEPGSTSGGSAWSHPQFEK",
          "organism": "Arabidopsis thaliana",
          "uniprot_code": "Q39054",
          "uniprot_range_first": 1,
          "uniprot_range_last": 451,
          "oligomerization": "dimer",
          "molecular_type": "protein",
          "uniprot_sequence": "MEGQGCCGGGGGKTEMIPTEEALRIVFGVSKRLPPVIVSLYEALGKVLAEDIRAPDPLPP\nYPASVKDGYAVVASDGPGEYPVITESRAGNDGLGVTVTPGTVAYVTTGGPIPDGADAVVQ\nVEDTKVIGDVSTESKRVKILIQTKKGTDIRRVGCDIEKDATVLTTGERIGASEIGLLATA\nGVTMVKVYPMPIVAILSTGDELVEPTAGTLGRGQIRDSNRAMLVAAVMQQQCKVVDLGIV\nRDDRKELEKVLDEAVSSGVDIILTSGGVSMGDRDFVKPLLEEKGKVYFSKVLMKPGKPLT\nFAEIRAKPTESMLGKTVLAFGLPGNPVSCLVCFNIFVVPTIRQLAGWTSPHPLRVRLRLQ\nEPIKSDPIRPEFHRAIIKWKDNDGSGTPGFVAESTGHQMSSRLLSMRSANALLELPATGN\nVLSAGSSVSAIIVSDISAFSIDKKASLSEPGSIRKEKKYDEVPGPEYKVAILTVSDTVSA\nGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLG\nGTGFTPRDVTPEATKKVIERETPGLLFVMMQESLKITPFAMLSRSAAGIRGSTLIINMPG\nNPNAVAECMEALLPALKHALKQIKGDKREKHPKHIPHAEATLPTDTWDQSYKSAYETGEK\nKEEAGCSCTH",
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          {
            "short_name": null,
            "address": "Braunschweig, Germany",
            "full_name": "Braunschweig University of Technology",
            "webpage": "https://www.tu-braunschweig.de/"
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  "last_modified": "2021-02-08T20:12:23.492874+01:00",
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}
查看完整 manifest.json 原文
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