Ras-related protein Rab-1A

{
  "code": "SASDCP8",
  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/A",
  "project": {
    "title": "The SAXS Analysis of the human GTPase Rab1a",
    "publication": null,
    "status": "released",
    "submitted_date": "2017-10-29",
    "released_date": "2024-10-29"
  },
  "pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDCP8.out",
  "intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDCP8.dat",
  "intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDCP8_dat_img.png",
  "intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDCP8_kratky_img.png",
  "pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDCP8_pofr_img.png",
  "intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDCP8_guinier_img.png",
  "sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDCP8.sascif",
  "experiment": {
    "instrument": {
      "detector": {
        "type": "CCD",
        "name": "AVIEX PCCD170170",
        "resolution": null
      },
      "name": "SOLEIL",
      "city": "Saint-Aubin",
      "country": "France",
      "beamline_name": "SWING",
      "beam_geometry": "",
      "type_of_source": "X-ray synchrotron",
      "point_source": null,
      "line_collimation": null,
      "sample_path_length": null,
      "line_collimation_slitlength": null,
      "line_collimation_integrationwidth": null,
      "xray_energy": null,
      "beam_profile_ah": null,
      "beam_profile_al": null
    },
    "sample": {
      "molecule": [
        {
          "long_name": "Ras-related protein Rab-1A",
          "short_name": "Rab1a",
          "sequence": "MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ\r\nERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAK\r\nEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGCCHHHHHH",
          "organism": "Homo sapiens",
          "uniprot_code": "P62820",
          "uniprot_range_first": null,
          "uniprot_range_last": null,
          "oligomerization": "monomer",
          "molecular_type": "protein",
          "uniprot_sequence": "MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI\nKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL\nLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGA\nTAGGAEKSNVKIQSTPVKQSGGGCC",
          "mw": 23.5,
          "total_mw": 23.5,
          "number_molecules": 1,
          "complex_state": false,
          "deuteration": null,
          "molecule_source": "biological",
          "molecule_description": null
        }
      ],
      "buffer": {
        "name": "300 mM NaCl, 2 mM 2-mercaptoethanol and 30 mM Tris-HCl",
        "concentration_unit": null,
        "comment": null,
        "additive": null,
        "concentration": null,
        "pka": null,
        "ph": 7.5,
        "deuteration": null
      },
      "purity_method": null,
      "name": "Ras-related protein Rab-1A",
      "ext_coefficient": null,
      "contrast": null,
      "specific_vol": null,
      "dry_vol": null,
      "absorbption": null,
      "deuteration": null,
      "mixture": null
    },
    "contributor": [
      {
        "affiliation": [
          {
            "short_name": null,
            "address": "Cachan, France",
            "full_name": "CNRS UMR8113, ENS Paris-Saclay",
            "webpage": "http://lbpa.ens-paris-saclay.fr/"
          }
        ],
        "contributor_name": "Wenhua",
        "contributor_surname": "Zhang",
        "orcid": null
      }
    ],
    "concentration_method": null,
    "concentration_unit": null,
    "date": "2015-11-17",
    "storage_temperature": null,
    "cell_temperature": 15.0,
    "exposure_time": 1.2,
    "number_of_frames": 240,
    "wavelength": 0.103,
    "sample_detector_distance": 1.2,
    "concentration_min": 2.0,
    "concentration_max": 6.0,
    "sample_volume": null,
    "flow_rate": null,
    "s_min": 0.169,
    "s_max": 6.125,
    "total_exposure_time": null,
    "seccolumn": null
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        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDCP8_fit1_model1_img.png",
          "software": "DAMMIF",
          "pdb_link": [],
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          "type_of_model": "dummy",
          "software_version": "2.8.2",
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDCP8_fit1_model1.pdb",
          "model_mw": 24.2,
          "bead_radius": 1.4,
          "log": "https://www.sasbdb.org/media/log_files/Rab1-df.log",
          "symmetry": "P1",
          "comment": "",
          "user": 84
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      ],
      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDCP8_fit1_fixed_fit_img.png",
      "software": "DAMMIF",
      "chi_square_value": 1.745,
      "p_value": 5e-06,
      "fit_residual_plot": "SASDCP8_fit1_fitresiduals_img.png",
      "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDCP8_fit1.fir",
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      "software_version": "2.8.2",
      "description": null
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  "estimated_volume_method": null,
  "pddf_software": "ATSAS GNOM",
  "pddf_software_version": "2.8.2",
  "i0_calibration_standard": null,
  "description": null,
  "experiment_description": "Synchrotron SAXS data from solutions of Ras-related protein Rab-1A in 300 mM NaCl, 2 mM 2-mercaptoethanol and 30 mM Tris-HCl, pH 7.5, were collected at the SWING beam line at the SOLEIL storage ring (Saint-Aubin, France) using a CCD AVIEX detector at a sample-detector distance of 1.2 m and at a wavelength of λ = 0.103 nm (I(s) vs s, where s = 4πsinθ/λ and 2θ is the scattering angle). Solute concentrations ranging between 2 and 6 mg/ml were measured at 15°C. 240 successive 1.2second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted and the different curves were scaled for protein concentration.",
  "tags": [],
  "intensity_unit": "1/cm",
  "experimental_mw": 24.0,
  "experimental_mw_error": null,
  "guinier_i0_mw": null,
  "guinier_i0_mw_error": null,
  "porod_mw": 24.0,
  "porod_mw_error": null,
  "pddf_i0": 0.01385,
  "pddf_i0_error": 1.4e-05,
  "guinier_i0": 0.01366,
  "guinier_i0_error": 1.3e-05,
  "pddf_rg": 2.54,
  "pddf_rg_error": 0.006,
  "guinier_rg": 2.38,
  "guinier_rg_error": 0.004,
  "pddf_dmax": 10.2,
  "pddf_dmax_error": null,
  "porod_volume": 36.1,
  "porod_volume_error": null,
  "estimated_volume": null,
  "estimated_volume_error": null,
  "guinier_point_first": 11,
  "guinier_point_last": 59,
  "pddf_point_first": null,
  "pddf_point_last": null,
  "i0_calibration_standard_data": null,
  "intensities_log_log_plot": "SASDCP8_datloglog_img.png",
  "symmetry": null,
  "last_modified": "2024-10-31T15:53:47.550615+01:00",
  "bragg_peak": []
}

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  "started_at": "2026-08-11T15:57:42.652391+00:00",
  "finished_at": "2026-08-11T15:57:51.249364+00:00",
  "source_last_modified": "2024-10-31T15:53:47.550615+01:00",
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