SASDCV7

TET12(2.3)SN-f5b

Data type: SASBDB experimental data Status: Published Curve type: Merged Last updated: 2023-06-21T07:56:18.120449+02:00
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1. Samples, Components and Experimental Conditions Sample & Experiment

Sample 1 · TET12(2.3)SN-f5b

Concentration1.1 – 4.1 Buffer / pH20 mM Tris 150 mM NaCl 10% glycerol / 7.5
Experimental temperature20.0 Facility / beamlinePETRA III / EMBL P12
Wavelength0.124 nmExposure0.045 s × 20

Molecular Components

ComponentType / organismUniProt and ConstructOligomeric StateMolecular weight
TET12(2.3)SN-f5b
View sequence
MSPEDENSQLEEKISQLKQKNSELKEEIQQLEYGSGPGSPEDEIQQLEEKNSQLKQEISQLEEKNQELKYGSGPGLEEELKQLEEELQAIEEQLAQLQWKAQARKEKLAQLKEKLGSGPGLEQIEERLEQIEERLQAKEWEKAQLREELQALREKLAQLGSGPGSPEDKNSELKEEIQQLEEENQQLEEKISELKYGSGPGDIEQELERAKESIRRLEQEVNQERSRMQYLQTLLEKGSGPGLEEELKQLEEELQAIEEQLAQLQWKAQARKEKLAQLKEKLGSGPGSPEDEIQQLEEEISQLEQKNSELKEKNQELKYGSGPGLEQIEERLEQIEERLQAKEWEKAQLREELQALREKLAQLGSGPGDIEQELERAKESIRRLEQEVNQERSRMQYLQTLLEKGSGPGSPEDKISELKEENQQLEQKIQQLKEENSQLEYGSGPGSPEDKISQLKEKIQQLKQENQQLEEENSQLEYGLEHHHHHHHH
proteinsynthetic construct——–—monomerMolecule count 156.682 kDa

Experimental Curves

CurvePoints / columnsq rangeUncertainty qualityNegative-intensity pointsSource file
11205[3]0.154492–6.715565 1/nmHas uncertainty columnMissing 01sasbdb/entries/v7/sasdcv7/source/SASDCV7.dat
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2. Measurements Reported by SASBDB Reported Results

MetricMethodValueUncertaintyUnit
dmaxP(r)11.471.0nm
i0Guinier6577.518.0—
i0P(r)6716.022.0—
mwExperimental50.0—kDa
mwGuinier I(0)50.01.5kDa
mwPorod61.7—kDa
porod_volumePorod105.0—nm³
rgGuinier3.450.2nm
rgP(r)3.530.01nm

These values are reported by SASBDB; SAXSdb did not recalculate them from the experimental curve.

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3. Source Fits and Models Source Fits & Models

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4. Source File Index Source Files

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5. Experiment Description and Publication Experiment & Publication

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6. Complete Source Record Complete Source Record

The following content comes directly from the SASBDB entry. Missing values are shown as “—”; SAXSdb does not infer undeclared units.

Open the original SASBDB entry

Buffer and Sample Properties

Buffer name20 mM Tris 150 mM NaCl 10% glycerolBuffer concentration—
pH7.5Additives—
Buffer description—
Purity measurement method—Extinction coefficient—
Absorbance—Scattering contrast—
Specific volume / dry volume— / —Mixture / deuteration— / —

Acquisition Conditions and Instrument

Measurement date2016-06-10Storage / measurement temperature10.0 / 20.0
Exposure time0.045Frames20
Wavelength0.124Sample-to-detector distance2.0
SourceX-ray synchrotronDetectorPilatus 1M-W
Facility / beamlinePETRA III / EMBL P12 · DESY; Hamburg, Germany
q range0.154 – 6.716Sample volume / flow rate— / —

Original SASBDB Plots

Experimental I(q)
Experimental I(q)
Experimental I(q), log-log
Experimental I(q), log-log
Guinier plot
Guinier plot
Kratky plot
Kratky plot
P(r) plot
P(r) plot

Downloadable Files

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All source fields (unfiltered)

Every source field is expanded here, including empty values, list members and fields already shown above.

summary.json:156 field values
Field pathRaw value
codeSASDCV7
statusPublished
type_of_curveMerged
angular_unit1/nm
project.titleDesign of coiled-coil protein-origami cages that self-assemble in vitro and in vivo.
project.publication.titleDesign of coiled-coil protein-origami cages that self-assemble in vitro and in vivo.
project.publication.author_listLjubetič A, Lapenta F, Gradišar H, Drobnak I, Aupič J, Strmšek Ž, Lainšček D, Hafner-Bratkovič I, Majerle A, Krivec N, Benčina M, Pisanski T, Veličković TĆ, Round A, Carazo JM, Melero R, Jerala R
project.publication.journalNat Biotechnol
project.publication.doi10.1038/nbt.3994
project.publication.pmid29035374
project.publication.published_date2017 Nov
project.statusreleased
project.submitted_date2017-09-28
project.released_date2017-10-09
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experiment.instrument.detector.namePilatus 1M-W
experiment.instrument.detector.resolution0.172
experiment.instrument.namePETRA III
experiment.instrument.cityDESY; Hamburg
experiment.instrument.countryGermany
experiment.instrument.beamline_nameEMBL P12
experiment.instrument.beam_geometryPoint
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
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experiment.instrument.sample_path_lengthnull
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experiment.sample.molecule[0].short_namenull
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experiment.sample.molecule[0].organismsynthetic construct
experiment.sample.molecule[0].uniprot_codenull
experiment.sample.molecule[0].uniprot_range_firstnull
experiment.sample.molecule[0].uniprot_range_lastnull
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequencenull
experiment.sample.molecule[0].mw56.682
experiment.sample.molecule[0].total_mw56.682
experiment.sample.molecule[0].number_molecules1
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionnull
experiment.sample.buffer.name20 mM Tris 150 mM NaCl 10% glycerol
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.5
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameTET12(2.3)SN-f5b
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_namenull
experiment.contributor[0].affiliation[0].addressnull
experiment.contributor[0].affiliation[0].full_nameNational Research Council
experiment.contributor[0].affiliation[0].webpagenull
experiment.contributor[0].contributor_nameJana
experiment.contributor[0].contributor_surnameAupič
experiment.contributor[0].orcid
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experiment.concentration_unitnull
experiment.date2016-06-10
experiment.storage_temperature10.0
experiment.cell_temperature20.0
experiment.exposure_time0.045
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experiment.flow_ratenull
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experiment.seccolumnnull
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fits[0].models[0].softwareMODELLER
fits[0].models[0].pdb_link[]
fits[0].models[0].model_titlenull
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fits[0].models[0].lognull
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fits[0].models[0].comment
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fits[0].softwareOther
fits[0].chi_square_value1.3
fits[0].p_value0.0
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fits[0].descriptionnull
estimated_volume_methodnull
pddf_softwareATSAS GNOM
pddf_software_version5.0
i0_calibration_standardnull
descriptionnull
experiment_descriptionSynchrotron SAXS data from solutions of TET12(2.3)SN-f5b in 20 mM Tris 150 mM NaCl 10% glycerol, pH 7.5 were collected on the P12 beam line at the PETRA III storage ring (Hamburg, Germany) using a Pilatus 1M detector at a sample-detector distance of 2 m and at a wavelength of λ = 0.124 nm (I(s) vs s, where s = 4πsinθ/λ and 2θ is the scattering angle). Solute concentrations ranging between 1.1 and 4.1 mg/ml were measured at 20°C. 20 successive 0.045 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted and the different curves were scaled for protein concentration. The low angle data collected at lower concentration were merged with the highest concentration high angle data to yield the final composite scattering curve. To detect any potential concentration dependent effects a series consisting of 3 concentrations was measured. The highest concentration was 4.1 mg/ml, while the lowest concentrations was 1.1 mg/ml. Frames were carefully inspected for radiation damage and those not showing any radiation damage were then averaged. Before and after each sample scattering, matching buffer was measured and subtracted from sample scattering. Scattering curves were merged and analyzed using PRIMUS software.
tags[]
intensity_unitnull
experimental_mw50.0
experimental_mw_errornull
guinier_i0_mw50.0
guinier_i0_mw_error1.5
porod_mw61.7
porod_mw_errornull
pddf_i06716.0
pddf_i0_error22.0
guinier_i06577.5
guinier_i0_error18.0
pddf_rg3.53
pddf_rg_error0.01
guinier_rg3.45
guinier_rg_error0.2
pddf_dmax11.47
pddf_dmax_error1.0
porod_volume105.0
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_first17
guinier_point_last41
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDCV7_datloglog_img.png
symmetrynull
last_modified2023-06-21T07:56:18.120449+02:00
bragg_peak[]
manifest.json:36 field values
Field pathRaw value
codeSASDCV7
statussuccess
started_at2026-08-11T16:45:48.448410+00:00
finished_at2026-08-11T16:46:01.753915+00:00
source_last_modified2023-06-21T07:56:18.120449+02:00
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View the complete summary.json source
{
  "code": "SASDCV7",
  "status": "Published",
  "type_of_curve": "Merged",
  "angular_unit": "1/nm",
  "project": {
    "title": "Design of coiled-coil protein-origami cages that self-assemble in vitro and in vivo.",
    "publication": {
      "title": "Design of coiled-coil protein-origami cages that self-assemble in vitro and in vivo.",
      "author_list": "Ljubetič A, Lapenta F, Gradišar H, Drobnak I, Aupič J, Strmšek Ž, Lainšček D, Hafner-Bratkovič I, Majerle A, Krivec N, Benčina M, Pisanski T, Veličković TĆ, Round A, Carazo JM, Melero R, Jerala R",
      "journal": "Nat Biotechnol",
      "doi": "10.1038/nbt.3994",
      "pmid": "29035374",
      "published_date": "2017 Nov"
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    "submitted_date": "2017-09-28",
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