查看完整 summary.json 原文
{
"code": "SASDCZ7",
"status": "Published",
"type_of_curve": "Merged",
"angular_unit": "1/nm",
"project": {
"title": "Design of coiled-coil protein-origami cages that self-assemble in vitro and in vivo.",
"publication": {
"title": "Design of coiled-coil protein-origami cages that self-assemble in vitro and in vivo.",
"author_list": "Ljubetič A, Lapenta F, Gradišar H, Drobnak I, Aupič J, Strmšek Ž, Lainšček D, Hafner-Bratkovič I, Majerle A, Krivec N, Benčina M, Pisanski T, Veličković TĆ, Round A, Carazo JM, Melero R, Jerala R",
"journal": "Nat Biotechnol",
"doi": "10.1038/nbt.3994",
"pmid": "29035374",
"published_date": "2017 Nov"
},
"status": "released",
"submitted_date": "2017-09-28",
"released_date": "2017-10-09"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDCZ7.out",
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDCZ7.dat",
"intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDCZ7_dat_img.png",
"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDCZ7_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDCZ7_pofr_img.png",
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDCZ7_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDCZ7.sascif",
"experiment": {
"instrument": {
"detector": {
"type": "Custom-built",
"name": "Pilatus 1M-W",
"resolution": 0.172
},
"name": "PETRA III",
"city": "DESY; Hamburg",
"country": "Germany",
"beamline_name": "EMBL P12",
"beam_geometry": "Point",
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
"sample_path_length": null,
"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "TET12(1.6)S-c6b",
"short_name": null,
"sequence": "MQLEDKVEELLSKNYHLENEVSRLKKLVGGDGKGSPEDEIQQLEEEISQLEQKNSQLKEKNQQLKYG GKGDGDIEQELERAKQSIRRLEQEVNQERSRMQYLQTLLSKGKGDGQLEDKVEELLSKNYHLENEVSRLKKLVGGKGDGLEEELKQLEEELQAIEEQLAQLQWKAQARKEKLAQLKEKLGKGDGSPEDENSQLEEKISQLKQKNSQLKEEIQQLEYGGKGDGDIEQELERAKQSIRRLEQEVNQERSRMQYLQTLLSKGKGDGSPEDEIQSLEEKNSQLKQEISQLEEKNQQLKYGGKGDGLEEELKQLEEELQAIEEQLAQLQWKAQARKE KLAQLKEKLGKGDGSPEDKISQLKQKIQQLKQENQQLEEENSQLEYGGDGKGSPEDKISQLKEENQQLEQKIQQLKEENSQLEYGGDGKGSPEDKNSQLKEEIQQLEEENQQLEEKISQLKYGLEHHHHHHHH",
"organism": "synthetic construct",
"uniprot_code": null,
"uniprot_range_first": null,
"uniprot_range_last": null,
"oligomerization": "monomer",
"molecular_type": "protein",
"uniprot_sequence": null,
"mw": 54.468,
"total_mw": 54.468,
"number_molecules": 1,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": null
}
],
"buffer": {
"name": "20 mM Tris 150 mM NaCl 10% glycerol",
"concentration_unit": null,
"comment": null,
"additive": null,
"concentration": null,
"pka": null,
"ph": 7.5,
"deuteration": null
},
"purity_method": null,
"name": "TET12(1.6)S-c6b",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": null,
"address": null,
"full_name": "National Research Council",
"webpage": null
}
],
"contributor_name": "Jana",
"contributor_surname": "Aupič",
"orcid": ""
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2016-04-07",
"storage_temperature": 20.0,
"cell_temperature": 20.0,
"exposure_time": 0.045,
"number_of_frames": 20,
"wavelength": 0.124,
"sample_detector_distance": 2.0,
"concentration_min": null,
"concentration_max": 2.91,
"sample_volume": null,
"flow_rate": null,
"s_min": 0.182,
"s_max": 6.716,
"total_exposure_time": null,
"seccolumn": null
},
"fits": [
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDCZ7_fit1_model1_img.png",
"software": "MODELLER",
"pdb_link": [],
"model_title": null,
"type_of_model": "atomic",
"software_version": "9.16",
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDCZ7_fit1_model1.pdb",
"model_mw": 54.43,
"bead_radius": 1.9,
"log": null,
"symmetry": "",
"comment": "",
"user": 201
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDCZ7_fit1_fit_img.png",
"software": "Other",
"chi_square_value": 1.01,
"p_value": 0.0,
"fit_residual_plot": "SASDCZ7_fit1_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDCZ7_fit1.fit",
"fit_log": null,
"software_version": "PepsiSAXS",
"description": null
}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": "5.0",
"i0_calibration_standard": null,
"description": null,
"experiment_description": "Synchrotron SAXS data from solutions of TET12(1.6)S-c6b in 20 mM Tris 150 mM NaCl 10% glycerol, pH 7.5 were collected on the P12 beam line at the PETRA III storage ring (Hamburg, Germany) using a Pilatus 1M detector at a sample-detector distance of 2 m and at a wavelength of λ = 0.124 nm (I(s) vs s, where s = 4πsinθ/λ and 2θ is the scattering angle). Solute concentrations ranging between 1 and 5 mg/ml were measured at 20°C. 20 successive 0.045 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted and the different curves were scaled for protein concentration. Scattering curves were merged and analyzed using PRIMUS software.",
"tags": [],
"intensity_unit": null,
"experimental_mw": 53.2,
"experimental_mw_error": null,
"guinier_i0_mw": 53.2,
"guinier_i0_mw_error": 0.4,
"porod_mw": 67.0,
"porod_mw_error": null,
"pddf_i0": 7157.0,
"pddf_i0_error": 41.0,
"guinier_i0": 7255.14,
"guinier_i0_error": 29.0,
"pddf_rg": 3.55,
"pddf_rg_error": 0.02,
"guinier_rg": 3.54,
"guinier_rg_error": 0.05,
"pddf_dmax": 11.5,
"pddf_dmax_error": 1.0,
"porod_volume": 114.0,
"porod_volume_error": null,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 1,
"guinier_point_last": 33,
"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDCZ7_datloglog_img.png",
"symmetry": null,
"last_modified": "2023-06-21T07:56:18.120449+02:00",
"bragg_peak": []
}查看完整 manifest.json 原文
{
"code": "SASDCZ7",
"status": "success",
"started_at": "2026-08-11T16:49:06.943109+00:00",
"finished_at": "2026-08-11T16:49:16.057874+00:00",
"source_last_modified": "2023-06-21T07:56:18.120449+02:00",
"files": [
{
"status": "downloaded",
"url": "https://www.sasbdb.org/rest-api/entry/summary/SASDCZ7/",
"path": "/data/saxsdb/sasbdb/entries/z7/sasdcz7/source/summary.json",
"size": 7464,
"sha256": "d2fc7d3ef8c9a2556416ade8260c5425e8d232644935cb18741e87cfab3874f3"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/intensities_files/SASDCZ7.dat",
"path": "/data/saxsdb/sasbdb/entries/z7/sasdcz7/source/SASDCZ7.dat",
"size": 55741,
"sha256": "17ffe5f0416264332d77c845408914e68841888a490648274dc27a67e9b7dd53",
"role": "curve"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/p_of_R_files/SASDCZ7.out",
"path": "/data/saxsdb/sasbdb/entries/z7/sasdcz7/source/SASDCZ7.out",
"size": 39443,
"sha256": "d4ef10f26ebb681249b19dcdf1b5d90ec66f15c78745788f423191f49473c496",
"role": "pddf"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDCZ7.sascif",
"path": "/data/saxsdb/sasbdb/entries/z7/sasdcz7/source/SASDCZ7.sascif",
"size": 557060,
"sha256": "757d9af6513a9b163d8a64d53ba10cd7b4c0fe77534eb54a57ff312499720b29",
"role": "sascif"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/zip_directories/SASDCZ7.zip",
"path": "/data/saxsdb/sasbdb/entries/z7/sasdcz7/source/SASDCZ7.zip",
"size": 123530,
"sha256": "87f10a7a7c1ef091005fcfd93925e59c4ad14ed62517e0e0ae1673695647b81f",
"role": "full_entry_zip",
"zip_member_count": 4,
"zip_validation": "central_directory_readable"
}
]
}
