SASDD75

'TG'-interacting factor homeodomain in solution (Homeobox protein TGIF1)

Data type: SASBDB experimental data Status: Published Curve type: Single concentration Last updated: 2023-06-21T07:56:39.492710+02:00
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1. Samples, Components and Experimental Conditions Sample & Experiment

Sample 1 · 'TG'-interacting factor homeodomain in solution (Homeobox protein TGIF1)

Concentration— – 6.0 Buffer / pH20 mM Tris, 150 mM NaCl / 7.4
Experimental temperature20.0 Facility / beamlinePETRA III / EMBL P12
Wavelength0.124 nmExposure0.045 s × 120

Molecular Components

ComponentType / organismUniProt and ConstructOligomeric StateMolecular weight
Homeobox protein TGIF1
View sequence
>TGIF1GPMDIPLDLSSSAGSGKRRRRGNLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAKISE
proteinHomo sapiensQ15583151–248dimerMolecule count 211.709 kDa

Experimental Curves

CurvePoints / columnsq rangeUncertainty qualityNegative-intensity pointsSource file
11485[3]0.0950367–7.90131 1/nmHas uncertainty columnMissing 034sasbdb/entries/75/sasdd75/source/SASDD75.dat
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2. Measurements Reported by SASBDB Reported Results

MetricMethodValueUncertaintyUnit
dmaxP(r)9.21—nm
i0Guinier11423.273.9arbitrary
i0P(r)11350.0—arbitrary
mwExperimental25.5—kDa
mwPorod26.0—kDa
porod_volumePorod42.0—nm³
rgGuinier2.70.05nm
rgP(r)2.753—nm

These values are reported by SASBDB; SAXSdb did not recalculate them from the experimental curve.

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3. Source Fits and Models Source Fits & Models

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4. Source File Index Source Files

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5. Experiment Description and Publication Experiment & Publication

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6. Complete Source Record Complete Source Record

The following content comes directly from the SASBDB entry. Missing values are shown as “—”; SAXSdb does not infer undeclared units.

Open the original SASBDB entry

Buffer and Sample Properties

Buffer name20 mM Tris, 150 mM NaClBuffer concentration—
pH7.4Additives—
Buffer description—
Purity measurement method—Extinction coefficient—
Absorbance—Scattering contrast—
Specific volume / dry volume— / —Mixture / deuteration— / —

Acquisition Conditions and Instrument

Measurement date2016-10-18Storage / measurement temperature10.0 / 20.0
Exposure time0.045Frames120
Wavelength0.124Sample-to-detector distance1.5
SourceX-ray synchrotronDetectorPilatus 2M
Facility / beamlinePETRA III / EMBL P12 · DESY; Hamburg, Germany
q range0.095 – 7.901Sample volume / flow rate— / —

Original SASBDB Plots

Experimental I(q)
Experimental I(q)
Experimental I(q), log-log
Experimental I(q), log-log
Guinier plot
Guinier plot
Kratky plot
Kratky plot
P(r) plot
P(r) plot

Downloadable Files

CategoryFileStatusSizeChecksumDownload and View
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All source fields (unfiltered)

Every source field is expanded here, including empty values, list members and fields already shown above.

summary.json:235 field values
Field pathRaw value
codeSASDD75
statusPublished
type_of_curveSingle concentration
angular_unit1/nm
project.title'TG' interacting factor
project.publicationnull
project.statusreleased
project.submitted_date2018-03-21
project.released_date2019-11-29
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experiment.instrument.detector.typenull
experiment.instrument.detector.namePilatus 2M
experiment.instrument.detector.resolutionnull
experiment.instrument.namePETRA III
experiment.instrument.cityDESY; Hamburg
experiment.instrument.countryGermany
experiment.instrument.beamline_nameEMBL P12
experiment.instrument.beam_geometrynull
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameHomeobox protein TGIF1
experiment.sample.molecule[0].short_nameTGIF
experiment.sample.molecule[0].sequence>TGIF1 GPMDIPLDLSSSAGSGKRRRRGNLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAKISE
experiment.sample.molecule[0].organismHomo sapiens
experiment.sample.molecule[0].uniprot_codeQ15583
experiment.sample.molecule[0].uniprot_range_first151
experiment.sample.molecule[0].uniprot_range_last248
experiment.sample.molecule[0].oligomerizationdimer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMVLAQSRVSAGVGSPHCSGSGGGGSDSFPWPASHPGNPQCSFSTAFLASPRLSRGTLAYL PPAPWSSLATPSALLGSSCAPPPPPARCPQPRALSPELGTKAGPRRPHRWELPRSPSQGA QGPAPRRRLLETMKGIVAASGSETEDEDSMDIPLDLSSSAGSGKRRRRGNLPKESVQILR DWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTIS RRGAKISETSSVESVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLARPS VICHTTVTALKDVPFSLCQSVGVGQNTDIQQIAAKNFTDTSLMYPEDTCKSGPSTNTQSG LFNTPPPTPPDLNQDFSGFQLLVDVALKRAAEMELQAKLTA
experiment.sample.molecule[0].mw11.709
experiment.sample.molecule[0].total_mw23.418
experiment.sample.molecule[0].number_molecules2
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionnull
experiment.sample.buffer.name20 mM Tris, 150 mM NaCl
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.4
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.name'TG'-interacting factor homeodomain in solution (Homeobox protein TGIF1)
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_nameIRB
experiment.contributor[0].affiliation[0].addressBarcelona, Spain
experiment.contributor[0].affiliation[0].full_nameInstitute for Research in Biomedicine in Barcelona (IRB)
experiment.contributor[0].affiliation[0].webpagehttps://www.irbbarcelona.org
experiment.contributor[0].contributor_nameEwelina
experiment.contributor[0].contributor_surnameGuca
experiment.contributor[0].orcidnull
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2016-10-18
experiment.storage_temperature10.0
experiment.cell_temperature20.0
experiment.exposure_time0.045
experiment.number_of_frames120
experiment.wavelength0.124
experiment.sample_detector_distance1.5
experiment.concentration_minnull
experiment.concentration_max6.0
experiment.sample_volumenull
experiment.flow_ratenull
experiment.s_min0.095
experiment.s_max7.901
experiment.total_exposure_timenull
experiment.seccolumnnull
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pddf_software_version5.0
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tags[]
intensity_unitarbitrary
experimental_mw25.5
experimental_mw_errornull
guinier_i0_mwnull
guinier_i0_mw_errornull
porod_mw26.0
porod_mw_errornull
pddf_i011350.0
pddf_i0_errornull
guinier_i011423.2
guinier_i0_error73.9
pddf_rg2.753
pddf_rg_errornull
guinier_rg2.7
guinier_rg_error0.05
pddf_dmax9.21
pddf_dmax_errornull
porod_volume42.0
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_first1
guinier_point_last74
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDD75_datloglog_img.png
symmetrynull
last_modified2023-06-21T07:56:39.492710+02:00
bragg_peak[]
manifest.json:36 field values
Field pathRaw value
codeSASDD75
statussuccess
started_at2026-08-11T14:40:52.469181+00:00
finished_at2026-08-11T14:41:02.272151+00:00
source_last_modified2023-06-21T07:56:39.492710+02:00
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View the complete summary.json source
{
  "code": "SASDD75",
  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/nm",
  "project": {
    "title": "'TG' interacting factor",
    "publication": null,
    "status": "released",
    "submitted_date": "2018-03-21",
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View the complete manifest.json source
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