SASDDC7

Synthetic FRET biosensor Twitch 2B N532F Ca-free

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Single concentration 最后更新:2021-12-20T11:10:57.938633+01:00
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1. 样品、组分与实验条件 Sample & Experiment

样品 1 · Synthetic FRET biosensor Twitch 2B N532F Ca-free

浓度— – 5.0 缓冲液 / pH20 mM MOPS 100 mM NaCl 10 mM EDTA / 7.0
实验温度20.0 设备 / 束线ESRF / BM29
波长0.0995 nm曝光1.0 s × 12

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
Synthetic FRET biosensor Twitch2B N532F
查看序列
MVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLSWGVQCFARYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNAIHGNVYITADKQKNGIKANFGLNCNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSKLSKDPNEKRDHMVLLEFVTAARMQVADASEEELSECFRIFDFDGNGFIDREEFGDIIRLTGEQLTDEDVDEIFGDSDTDKNGRIDFDEFLKMVENVQPIYPELMGGVQLADHYQQNTPIGDGPVLLPDNHYLSYQSKLSKDPNEKRDHMVLLEFVTAAGITLGMDELYKGGTGGSMVSKGEELFTGVVPILVELDGDVNGHKFSVRGEGEGDATNGKLTLKLICTTGKLPVPWPTLVTTLGYGLMCFARYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHFVYITADKQKNGIKANFKIRHNIED
proteinsynthetic construct——–—monomer分子数 162.432 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
11043[3]0.03460564–4.951839 1/nm含误差列缺失 07sasbdb/entries/c7/sasddc7/source/SASDDC7.dat
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2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
i0Guinier36.590.04arbitrary
mwExperimental55.03—kDa
rgGuinier3.91—nm

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

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3. 来源拟合与模型 Source Fits & Models

该条目没有来源拟合记录。

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4. 来源文件索引 Source Files

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5. 实验说明与论文 Experiment & Publication

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6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称20 mM MOPS 100 mM NaCl 10 mM EDTA缓冲液浓度—
pH7.0添加剂—
缓冲液说明Buffer B
纯度测定方法—消光系数—
吸收值—散射对比度—
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2016-06-30储存 / 测量温度20.0 / 20.0
曝光时间1.0帧数12
波长0.0995样品-探测器距离2.867
光源X-ray synchrotron探测器Pilatus 1M
机构 / 束线ESRF / BM29 · Grenoble, France
q 范围0.035 – 4.952样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图

可下载文件

类别文件状态大小校验值下载与查看
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full_entry_zipsasbdb/entries/c7/sasddc7/source/SASDDC7.zipdownloaded1788555ab44f315ee32662c31890d430fc1998c8c22222fcdea9651e28ce224e915b5下载查看原文件源站
pddfsasbdb/entries/c7/sasddc7/source/SASDDC7.outnot_listed——下载查看原文件
sascifsasbdb/entries/c7/sasddc7/source/SASDDC7.sascifdownloaded6150254809e2fb14852cbb1041ad9bb9236445fd43a3e2a985ad097502bc9c233cefa下载查看原文件源站
summarysasbdb/entries/c7/sasddc7/source/summary.jsondownloaded59317d92767c8dc2738af62ef9e1f07e74e8fc435b2878631321444dbe6c42f60dfa下载查看原文件源站
curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(1 项)
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:129 个字段值
字段路径原始值
codeSASDDC7
statusPublished
type_of_curveSingle concentration
angular_unit1/nm
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project.publicationnull
project.statusreleased
project.submitted_date2018-05-25
project.released_date2021-12-20
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experiment.instrument.detector.resolution172.0
experiment.instrument.nameESRF
experiment.instrument.cityGrenoble
experiment.instrument.countryFrance
experiment.instrument.beamline_nameBM29
experiment.instrument.beam_geometry
experiment.instrument.type_of_sourceX-ray synchrotron
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experiment.instrument.sample_path_lengthnull
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experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameSynthetic FRET biosensor Twitch2B N532F
experiment.sample.molecule[0].short_nameTW6
experiment.sample.molecule[0].sequenceMVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICT TGKLPVPWPTLVTTLSWGVQCFARYPDHMKQHDFFKSAMPEGYVQERTIF FKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNAIHGN VYITADKQKNGIKANFGLNCNIEDGSVQLADHYQQNTPIGDGPVLLPDNH YLSTQSKLSKDPNEKRDHMVLLEFVTAARMQVADASEEELSECFRIFDFD GNGFIDREEFGDIIRLTGEQLTDEDVDEIFGDSDTDKNGRIDFDEFLKMV ENVQPIYPELMGGVQLADHYQQNTPIGDGPVLLPDNHYLSYQSKLSKDPN EKRDHMVLLEFVTAAGITLGMDELYKGGTGGSMVSKGEELFTGVVPILVE LDGDVNGHKFSVRGEGEGDATNGKLTLKLICTTGKLPVPWPTLVTTLGYG LMCFARYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGD TLVNRIELKGIDFKEDGNILGHKLEYNYNSHFVYITADKQKNGIKANFKI RHNIED
experiment.sample.molecule[0].organismsynthetic construct
experiment.sample.molecule[0].uniprot_codenull
experiment.sample.molecule[0].uniprot_range_firstnull
experiment.sample.molecule[0].uniprot_range_lastnull
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequencenull
experiment.sample.molecule[0].mw62.432
experiment.sample.molecule[0].total_mw62.432
experiment.sample.molecule[0].number_molecules1
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionnull
experiment.sample.buffer.name20 mM MOPS 100 mM NaCl 10 mM EDTA
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentBuffer B
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.0
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameSynthetic FRET biosensor Twitch 2B N532F Ca-free
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_namenull
experiment.contributor[0].affiliation[0].addressGermany
experiment.contributor[0].affiliation[0].full_nameMax Planck Institute for Biophysical Chemistry
experiment.contributor[0].affiliation[0].webpagehttps://www.mpibpc.mpg.de
experiment.contributor[0].contributor_namePablo
experiment.contributor[0].contributor_surnameTrigo Mourino
experiment.contributor[0].orcidnull
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2016-06-30
experiment.storage_temperature20.0
experiment.cell_temperature20.0
experiment.exposure_time1.0
experiment.number_of_frames12
experiment.wavelength0.0995
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experiment.concentration_minnull
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experiment.flow_ratenull
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experiment.total_exposure_timenull
experiment.seccolumnnull
fits[]
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pddf_softwarenull
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experiment_descriptionSynchrotron SAXS data from solutions of the synthetic FRET biosensor, Twitch 2B N532F, in the absence of calcium, in 20 mM MOPS 100 mM NaCl 10 mM EDTA, pH 7 were collected on the BM29 beam line at the ESRF (Grenoble, France) using a Pilatus 1M detector at a sample-detector distance of 2.9 m and at a wavelength of λ = 0.0995 nm (l(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 5.00 mg/ml was measured at 20°C. 12 successive 1 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.
tags[]
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experimental_mw_errornull
guinier_i0_mwnull
guinier_i0_mw_errornull
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porod_mw_errornull
pddf_i0null
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intensities_log_log_plotSASDDC7_datloglog_img.png
symmetrynull
last_modified2021-12-20T11:10:57.938633+01:00
bragg_peak[]
manifest.json:33 个字段值
字段路径原始值
codeSASDDC7
statussuccess
started_at2026-08-11T15:26:34.811955+00:00
finished_at2026-08-11T15:26:41.648876+00:00
source_last_modified2021-12-20T11:10:57.938633+01:00
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查看完整 summary.json 原文
{
  "code": "SASDDC7",
  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/nm",
  "project": {
    "title": "Synthetic FRET biosensor Twitch 2B",
    "publication": null,
    "status": "released",
    "submitted_date": "2018-05-25",
    "released_date": "2021-12-20"
  },
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  "intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDDC7.dat",
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  "bragg_peak": []
}
查看完整 manifest.json 原文
{
  "code": "SASDDC7",
  "status": "success",
  "started_at": "2026-08-11T15:26:34.811955+00:00",
  "finished_at": "2026-08-11T15:26:41.648876+00:00",
  "source_last_modified": "2021-12-20T11:10:57.938633+01:00",
  "files": [
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/rest-api/entry/summary/SASDDC7/",
      "path": "/data/saxsdb/sasbdb/entries/c7/sasddc7/source/summary.json",
      "size": 5931,
      "sha256": "7d92767c8dc2738af62ef9e1f07e74e8fc435b2878631321444dbe6c42f60dfa"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/intensities_files/SASDDC7.dat",
      "path": "/data/saxsdb/sasbdb/entries/c7/sasddc7/source/SASDDC7.dat",
      "size": 57932,
      "sha256": "f228529ddeb5c30dbef14f7492c2b8e3110515e1d6c84d78bfdf8040f107be8b",
      "role": "curve"
    },
    {
      "role": "pddf",
      "status": "not_listed",
      "path": "/data/saxsdb/sasbdb/entries/c7/sasddc7/source/SASDDC7.out"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDDC7.sascif",
      "path": "/data/saxsdb/sasbdb/entries/c7/sasddc7/source/SASDDC7.sascif",
      "size": 61502,
      "sha256": "54809e2fb14852cbb1041ad9bb9236445fd43a3e2a985ad097502bc9c233cefa",
      "role": "sascif"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/zip_directories/SASDDC7.zip",
      "path": "/data/saxsdb/sasbdb/entries/c7/sasddc7/source/SASDDC7.zip",
      "size": 17885,
      "sha256": "55ab44f315ee32662c31890d430fc1998c8c22222fcdea9651e28ce224e915b5",
      "role": "full_entry_zip",
      "zip_member_count": 1,
      "zip_validation": "central_directory_readable"
    }
  ]
}