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{
"code": "SASDDF6",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/nm",
"project": {
"title": "Internal nanosecond dynamics in the intrinsically disordered myelin basic protein.",
"publication": {
"title": "Internal nanosecond dynamics in the intrinsically disordered myelin basic protein.",
"author_list": "Stadler AM, Stingaciu L, Radulescu A, Holderer O, Monkenbusch M, Biehl R, Richter D",
"journal": "J Am Chem Soc",
"doi": "10.1021/ja502343b",
"pmid": "24758710",
"published_date": "2014 May 14"
},
"status": "released",
"submitted_date": "2018-05-08",
"released_date": "2018-05-09"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDDF6.out",
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDDF6.dat",
"intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDDF6_dat_img.png",
"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDDF6_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDDF6_pofr_img.png",
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDDF6_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDDF6.sascif",
"experiment": {
"instrument": {
"detector": {
"type": "Dectris",
"name": "Pilatus 1M",
"resolution": 172.0
},
"name": "ESRF",
"city": "Grenoble",
"country": "France",
"beamline_name": "BM29",
"beam_geometry": "",
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
"sample_path_length": null,
"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "Myelin basic protein",
"short_name": null,
"sequence": ">sp|P02687|1-169\r\nAAQKRPSQRSKYLASASTMDHARHGFLPRHRDTGILDSLGRFFGSDRGAPKRGSGKDGHH\r\nAARTTHYGSLPQKAQGHRPQDENPVVHFFKNIVTPRTPPPSQGKGRGLSLSRFSWGAEGQ\r\nKPGFGYGGRASDYKSAHKGLKGHDAQGTLSKIFKLGGRDSRSGSPMARR",
"organism": "Bos taurus",
"uniprot_code": "P02687",
"uniprot_range_first": null,
"uniprot_range_last": null,
"oligomerization": "monomer",
"molecular_type": "protein",
"uniprot_sequence": "AAQKRPSQRSKYLASASTMDHARHGFLPRHRDTGILDSLGRFFGSDRGAPKRGSGKDGHH\nAARTTHYGSLPQKAQGHRPQDENPVVHFFKNIVTPRTPPPSQGKGRGLSLSRFSWGAEGQ\nKPGFGYGGRASDYKSAHKGLKGHDAQGTLSKIFKLGGRDSRSGSPMARR",
"mw": 18.323,
"total_mw": 18.323,
"number_molecules": 1,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": null
}
],
"buffer": {
"name": "20 mM NaH2PO4/ Na2HPO4, 99.9% D2O",
"concentration_unit": null,
"comment": "deuterium oxide",
"additive": null,
"concentration": null,
"pka": null,
"ph": 4.8,
"deuteration": null
},
"purity_method": null,
"name": "Myelin basic protein",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": null,
"address": "Germany",
"full_name": "Forschungszentrum Jülich",
"webpage": "https://www.fz-juelich.de"
}
],
"contributor_name": "Andreas",
"contributor_surname": "Stadler",
"orcid": null
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2013-02-21",
"storage_temperature": 10.0,
"cell_temperature": 10.0,
"exposure_time": 2.0,
"number_of_frames": 10,
"wavelength": 0.099,
"sample_detector_distance": null,
"concentration_min": null,
"concentration_max": 4.5,
"sample_volume": null,
"flow_rate": null,
"s_min": 0.137,
"s_max": 4.525,
"total_exposure_time": null,
"seccolumn": null
},
"fits": [
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDDF6_fit1_model1_img.png",
"software": "EOM/RANCH",
"pdb_link": [],
"model_title": null,
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"model_data": "https://www.sasbdb.org/media/pdb_file/SASDDF6_fit1_model1.pdb",
"model_mw": 18.59,
"bead_radius": 1.9,
"log": null,
"symmetry": null,
"comment": null,
"user": 317
},
{
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"software": "EOM/RANCH",
"pdb_link": [],
"model_title": null,
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"model_data": "https://www.sasbdb.org/media/pdb_file/SASDDF6_fit1_model2.pdb",
"model_mw": 18.59,
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},
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDDF6_fit1_model3_img.png",
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"model_mw": 18.59,
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},
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDDF6_fit1_model4_img.png",
"software": "EOM/RANCH",
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},
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDDF6_fit1_model5_img.png",
"software": "EOM/RANCH",
"pdb_link": [],
"model_title": null,
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"software_version": null,
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDDF6_fit1_model5.pdb",
"model_mw": 18.59,
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},
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDDF6_fit1_model6_img.png",
"software": "EOM/RANCH",
"pdb_link": [],
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"type_of_model": "mix",
"software_version": null,
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDDF6_fit1_model6.pdb",
"model_mw": 18.59,
"bead_radius": 1.9,
"log": null,
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"user": 317
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDDF6_fit1_fixed_fit_img.png",
"software": "EOM/GAJOE",
"chi_square_value": 1.183582,
"p_value": 0.000947,
"fit_residual_plot": "fit4columns1422_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDDF6_fit1.fit",
"fit_log": "https://www.sasbdb.org/media/fitting_files/log_files/logFile_001_1_OIne5hA.log",
"software_version": "2.5",
"description": null
}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": "5.0",
"i0_calibration_standard": null,
"description": null,
"experiment_description": "Synchrotron SAXS data from solutions of myelin basic protein in 20 mM NaH2PO4/Na2HPO4, 99.9% v/v D2O, pH 4.8 were collected on the BM29 beam line at the ESRF (Grenoble, France) using a Pilatus 1M detector at a wavelength of λ = 0.099 nm (l(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). 10 successive 2 second frames were collected at 10°C from a sample at 4.5 mg/ml. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.",
"tags": [
"idp"
],
"intensity_unit": "arbitrary",
"experimental_mw": 20.49,
"experimental_mw_error": null,
"guinier_i0_mw": 20.49,
"guinier_i0_mw_error": 0.01,
"porod_mw": null,
"porod_mw_error": null,
"pddf_i0": 20.72,
"pddf_i0_error": null,
"guinier_i0": 20.49,
"guinier_i0_error": 0.023,
"pddf_rg": 3.461,
"pddf_rg_error": null,
"guinier_rg": 3.3,
"guinier_rg_error": 0.01,
"pddf_dmax": 11.06,
"pddf_dmax_error": null,
"porod_volume": null,
"porod_volume_error": null,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 8,
"guinier_point_last": 60,
"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDDF6_datloglog_img.png",
"symmetry": null,
"last_modified": "2020-08-28T15:28:05.022045+02:00",
"bragg_peak": []
}
