SASDDV8

Boiled chicken egg albumen

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Merged 最后更新:2022-01-27T08:13:53.938538+01:00
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1. 样品、组分与实验条件 Sample & Experiment

样品 1 · Boiled chicken egg albumen

浓度— – 170.0 缓冲液 / pHWater / 7.0
实验温度10.0 设备 / 束线University of Pennslyvania / Bruker Nonius FR591
波长0.1542 nm曝光1800.0 s × 1

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
Ovalbumin
查看序列
GSIGAASMEFCFDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDSIEAQCGTSVNVHSSLRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIRNVLQPSSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTEQESKPVQMMYQIGLFRVASMASEKMKILELPFASGTMSMLVLLPDEVSGLEQLESIINFEKLTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLMAMGITDVFSSSANLSGISSAESLKISQAVHAAHAEINEAGREVVGSAEAGVDAASVSEEFRADHPFLFCIKHIATNAVLFFGRCVSP
proteinGallus gallusP01012—–—monomer分子数 142.75 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
1161[3]0.008–0.328 1/A含误差列缺失 00sasbdb/entries/v8/sasddv8/source/SASDDV8.dat
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2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
mwExperimental43.0—kDa
rgP(r)4.0—Å

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

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3. 来源拟合与模型 Source Fits & Models

该条目没有来源拟合记录。

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4. 来源文件索引 Source Files

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5. 实验说明与论文 Experiment & Publication

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6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称Water缓冲液浓度—
pH7.0添加剂—
缓冲液说明—
纯度测定方法—消光系数—
吸收值—散射对比度—
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2013-06-27储存 / 测量温度4.0 / 10.0
曝光时间1800.0帧数1
波长0.1542样品-探测器距离1.5
光源X-ray in house探测器Bruker HI-STAR
机构 / 束线University of Pennslyvania / Bruker Nonius FR591 · Philadelphia, PA, USA
q 范围0.08 – 3.28样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图

可下载文件

类别文件状态大小校验值下载与查看
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pddfsasbdb/entries/v8/sasddv8/source/SASDDV8.outnot_listed——下载查看原文件
sascifsasbdb/entries/v8/sasddv8/source/SASDDV8.sascifdownloaded13992e469b3c730f476f5439b75aedd74bce416f606c44be45d6a728c7b7cb665a679下载查看原文件源站
summarysasbdb/entries/v8/sasddv8/source/summary.jsondownloaded70785492c39392ad8a277c33259874a9e128bd24e1a1012396049cb4b86082bd074d下载查看原文件源站
curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(1 项)
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:134 个字段值
字段路径原始值
codeSASDDV8
statusPublished
type_of_curveMerged
angular_unit1/A
project.titleThe Proof Is in the <i>Pidan</i>: Generalizing Proteins as Patchy Particles.
project.publication.titleThe Proof Is in the <i>Pidan</i>: Generalizing Proteins as Patchy Particles.
project.publication.author_listCai J, Sweeney AM
project.publication.journalACS Cent Sci
project.publication.doi10.1021/acscentsci.8b00187
project.publication.pmid30062112
project.publication.published_date2018 Jul 25
project.statusreleased
project.submitted_date2018-06-23
project.released_date2018-07-20
pddf_datanull
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experiment.instrument.detector.resolution0.0
experiment.instrument.nameUniversity of Pennslyvania
experiment.instrument.cityPhiladelphia, PA
experiment.instrument.countryUSA
experiment.instrument.beamline_nameBruker Nonius FR591
experiment.instrument.beam_geometrynull
experiment.instrument.type_of_sourceX-ray in house
experiment.instrument.point_sourcenull
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experiment.instrument.line_collimation_slitlengthnull
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experiment.instrument.xray_energynull
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experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameOvalbumin
experiment.sample.molecule[0].short_nameOva
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experiment.sample.molecule[0].organismGallus gallus
experiment.sample.molecule[0].uniprot_codeP01012
experiment.sample.molecule[0].uniprot_range_firstnull
experiment.sample.molecule[0].uniprot_range_lastnull
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMGSIGAASMEFCFDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRF DKLPGFGDSIEAQCGTSVNVHSSLRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQ CVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIRNVLQPSSVDSQTAMVLVNAIV FKGLWEKAFKDEDTQAMPFRVTEQESKPVQMMYQIGLFRVASMASEKMKILELPFASGTM SMLVLLPDEVSGLEQLESIINFEKLTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLMA MGITDVFSSSANLSGISSAESLKISQAVHAAHAEINEAGREVVGSAEAGVDAASVSEEFR ADHPFLFCIKHIATNAVLFFGRCVSP
experiment.sample.molecule[0].mw42.75
experiment.sample.molecule[0].total_mw42.75
experiment.sample.molecule[0].number_molecules1
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionnull
experiment.sample.buffer.nameWater
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.0
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameBoiled chicken egg albumen
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_namePenn
experiment.contributor[0].affiliation[0].addressPhiladelphia, PA, United States
experiment.contributor[0].affiliation[0].full_nameUniversity of Pennsylvania
experiment.contributor[0].affiliation[0].webpagehttp://www.upenn.edu/
experiment.contributor[0].contributor_nameJing
experiment.contributor[0].contributor_surnameCai
experiment.contributor[0].orcidnull
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2013-06-27
experiment.storage_temperature4.0
experiment.cell_temperature10.0
experiment.exposure_time1800.0
experiment.number_of_frames1
experiment.wavelength0.1542
experiment.sample_detector_distance1.5
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experiment.flow_ratenull
experiment.s_min0.08
experiment.s_max3.28
experiment.total_exposure_timenull
experiment.seccolumnnull
fits[]
estimated_volume_methodnull
pddf_softwarenull
pddf_software_versionnull
i0_calibration_standardnull
descriptionnull
experiment_descriptionThis data set displays SAXS data measured from egg albumen of a hard-boiled chicken egg. The most abundant protein in the egg white is ovalbumin, but there are other proteins present as well. After hard boiling, the egg proteins completely unfolded, resulting in a white gel. Because the proteins strongly interact to form extended materials, the parameters Rg and monomer molecular weight do not apply to this sample. Similarly, because this is a measurement of intact biological tissue, there is no experimental buffer per se to subtract, and accordingly, raw data without buffer subtraction are reported here. The sample measurement (1 x 1800 s exposure) was performed at 10°C. Measurements used a rotating-anode system with Cu Kα radiation (λ = 0.1542 nm) from a Bruker-Nonius FR591 generator operated at 3.4 kW. Collimation was performed using circular pinholes and Osmic Max-Flux confocal optics. The scattered X-rays (l(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle) were collected using a Bruker Hi-Star area detector. Data were collected at sample−detector distances of 54 and 150 cm, and the data merged to create a single profile over the range q ∈ [0.08, 3.5] nm−1. To minimize background, an integral vacuum with a pressure of < 0.3 mbar was maintained along the entire flight path.
tags[0]softmatter
intensity_unitarbitrary
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pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDDV8_datloglog_img.png
symmetrynull
last_modified2022-01-27T08:13:53.938538+01:00
bragg_peak[]
manifest.json:33 个字段值
字段路径原始值
codeSASDDV8
statussuccess
started_at2026-08-11T16:01:32.718669+00:00
finished_at2026-08-11T16:01:37.952346+00:00
source_last_modified2022-01-27T08:13:53.938538+01:00
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查看完整 summary.json 原文
{
  "code": "SASDDV8",
  "status": "Published",
  "type_of_curve": "Merged",
  "angular_unit": "1/A",
  "project": {
    "title": "The Proof Is in the <i>Pidan</i>: Generalizing Proteins as Patchy Particles.",
    "publication": {
      "title": "The Proof Is in the <i>Pidan</i>: Generalizing Proteins as Patchy Particles.",
      "author_list": "Cai J, Sweeney AM",
      "journal": "ACS Cent Sci",
      "doi": "10.1021/acscentsci.8b00187",
      "pmid": "30062112",
      "published_date": "2018 Jul 25"
    },
    "status": "released",
    "submitted_date": "2018-06-23",
    "released_date": "2018-07-20"
  },
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      "country": "USA",
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      "beam_geometry": null,
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    },
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          "short_name": "Ova",
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          "organism": "Gallus gallus",
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          "oligomerization": "monomer",
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      },
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  "experiment_description": "This data set displays SAXS data measured from egg albumen of a hard-boiled chicken egg. The most abundant protein in the egg white is ovalbumin, but there are other proteins present as well. After hard boiling, the egg proteins completely unfolded, resulting in a white gel.  Because the proteins strongly interact to form extended materials, the parameters Rg and monomer molecular weight do not apply to this sample. Similarly, because this is a measurement of intact biological tissue, there is no experimental buffer per se to subtract, and accordingly, raw data without buffer subtraction are reported here. The sample measurement (1 x 1800 s exposure) was performed at 10°C.  Measurements used a rotating-anode system with Cu Kα radiation (λ = 0.1542 nm) from a Bruker-Nonius FR591 generator operated at 3.4 kW. Collimation was performed using circular pinholes and Osmic Max-Flux confocal optics. The scattered X-rays (l(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle) were collected using a Bruker Hi-Star area detector. Data were collected at sample−detector distances of 54 and 150 cm, and the data merged to create a single profile over the range q ∈ [0.08, 3.5] nm−1. To minimize background, an integral vacuum with a pressure of < 0.3 mbar was maintained along the entire flight path.",
  "tags": [
    "softmatter"
  ],
  "intensity_unit": "arbitrary",
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  "experimental_mw_error": null,
  "guinier_i0_mw": null,
  "guinier_i0_mw_error": null,
  "porod_mw": null,
  "porod_mw_error": null,
  "pddf_i0": null,
  "pddf_i0_error": null,
  "guinier_i0": null,
  "guinier_i0_error": null,
  "pddf_rg": 4.0,
  "pddf_rg_error": null,
  "guinier_rg": null,
  "guinier_rg_error": null,
  "pddf_dmax": null,
  "pddf_dmax_error": null,
  "porod_volume": null,
  "porod_volume_error": null,
  "estimated_volume": null,
  "estimated_volume_error": null,
  "guinier_point_first": null,
  "guinier_point_last": null,
  "pddf_point_first": null,
  "pddf_point_last": null,
  "i0_calibration_standard_data": null,
  "intensities_log_log_plot": "SASDDV8_datloglog_img.png",
  "symmetry": null,
  "last_modified": "2022-01-27T08:13:53.938538+01:00",
  "bragg_peak": []
}
查看完整 manifest.json 原文
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