The following content comes directly from the SASBDB entry. Missing values are shown as “—”; SAXSdb does not infer undeclared units.
Every source field is expanded here, including empty values, list members and fields already shown above.
View the complete summary.json source
{
"code": "SASDEV9",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/A",
"project": {
"title": "Structural Organization and Dynamics of Homodimeric Cytohesin Family Arf GTPase Exchange Factors in Solution and on Membranes.",
"publication": {
"title": "Structural Organization and Dynamics of Homodimeric Cytohesin Family Arf GTPase Exchange Factors in Solution and on Membranes.",
"author_list": "Das S, Malaby AW, Nawrotek A, Zhang W, Zeghouf M, Maslen S, Skehel M, Chakravarthy S, Irving TC, Bilsel O, Cherfils J, Lambright DG",
"journal": "Structure",
"doi": "10.1016/j.str.2019.09.007",
"pmid": "31601460",
"published_date": "2019 Oct 5"
},
"status": "released",
"submitted_date": "2019-01-17",
"released_date": "2019-10-14"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDEV9.out",
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDEV9.dat",
"intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDEV9_dat_img.png",
"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDEV9_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDEV9_pofr_img.png",
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDEV9_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDEV9.sascif",
"experiment": {
"instrument": {
"detector": {
"type": "CCD",
"name": "AVIEX PCCD170170",
"resolution": null
},
"name": "SOLEIL",
"city": "Saint-Aubin",
"country": "France",
"beamline_name": "SWING",
"beam_geometry": "",
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
"sample_path_length": null,
"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "Cytohesin-2; ARNO truncation mutant",
"short_name": "ARNO-CC",
"sequence": "TLQRNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFL\r\nYKGEGLNKTAIGDYLGEREELNLAVLHAFVDLHEFTDLNLVQAL\r\nRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCY\r\nVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEE\r\nLLRNLYDSIRNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGGR\r\nVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVDDPRK\r\nPNCFELYIPNNKGQLIKACKTEADGRVVEGNHMVYRISAPTQEEK\r\nDEWIKSIQAAVSVDPFYEMLAARKKRISVKKKQEQP",
"organism": "Homo sapiens",
"uniprot_code": "Q99418",
"uniprot_range_first": 58,
"uniprot_range_last": 400,
"oligomerization": "monomer",
"molecular_type": "protein",
"uniprot_sequence": "MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ\nRNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE\nLNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQ\nSTDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRN\nEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEYTTDKEP\nRGIIPLENLSIREVDDPRKPNCFELYIPNNKGQLIKACKTEADGRVVEGNHMVYRISAPT\nQEEKDEWIKSIQAAVSVDPFYEMLAARKKRISVKKKQEQP",
"mw": 39.861,
"total_mw": 39.861,
"number_molecules": 1,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": null
}
],
"buffer": {
"name": "300 mM NaCl, 2 mM 2-mercaptoethanol and 30 mM Tris-HCl",
"concentration_unit": null,
"comment": null,
"additive": null,
"concentration": null,
"pka": null,
"ph": 7.5,
"deuteration": null
},
"purity_method": null,
"name": "Cytohesin-2; ARF nucleotide-binding site opener, ARNO truncation mutant",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": null,
"address": "Cachan, France",
"full_name": "CNRS UMR8113, ENS Paris-Saclay",
"webpage": "http://lbpa.ens-paris-saclay.fr/"
}
],
"contributor_name": "Wenhua",
"contributor_surname": "Zhang",
"orcid": null
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2015-11-25",
"storage_temperature": 15.0,
"cell_temperature": 15.0,
"exposure_time": 1.5,
"number_of_frames": 1,
"wavelength": 0.1033,
"sample_detector_distance": 1.8,
"concentration_min": null,
"concentration_max": 8.0,
"sample_volume": null,
"flow_rate": null,
"s_min": 0.062,
"s_max": 6.125,
"total_exposure_time": null,
"seccolumn": null
},
"fits": [
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDEV9_fit1_model1_img.png",
"software": "DAMMIN",
"pdb_link": [],
"model_title": null,
"type_of_model": "dummy",
"software_version": null,
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDEV9_fit1_model1.pdb",
"model_mw": 39.624,
"bead_radius": 2.5,
"log": "https://www.sasbdb.org/media/log_files/DM-a3.log",
"symmetry": "P1",
"comment": null,
"user": 84
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/DM-a3_fit_img.png",
"software": "DAMMIN",
"chi_square_value": 1.722,
"p_value": 0.006663,
"fit_residual_plot": "DM-a3_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDEV9_fit1.fir",
"fit_log": "https://www.sasbdb.org/media/fitting_files/log_files/DM-a3.log",
"software_version": null,
"description": null
}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": "5.0",
"i0_calibration_standard": null,
"description": null,
"experiment_description": "Synchrotron SAXS data from solutions ofthe cytohesin-2; ARF nucleotide-binding site opener, ARNO truncation mutant in 300 mM NaCl, 2 mM 2-mercaptoethanol and 30 mM Tris-HCl, pH 7.5 were collected on the SWING beam line at SOLEIL (Saint-Aubin, France) using a CCD AVIEX PCCD170170 detector at a sample-detector distance of 1.8 m and at a wavelength of λ = 0.1033 nm (l(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 8.00 mg/ml was measured at 15°C. One 1.5 second frame was collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.",
"tags": [],
"intensity_unit": "1/cm",
"experimental_mw": 41.5,
"experimental_mw_error": null,
"guinier_i0_mw": null,
"guinier_i0_mw_error": null,
"porod_mw": 39.0,
"porod_mw_error": null,
"pddf_i0": 0.03045,
"pddf_i0_error": null,
"guinier_i0": 0.03041,
"guinier_i0_error": 1e-05,
"pddf_rg": 2.77,
"pddf_rg_error": null,
"guinier_rg": 2.745,
"guinier_rg_error": 0.02,
"pddf_dmax": 9.89,
"pddf_dmax_error": null,
"porod_volume": 63.0,
"porod_volume_error": null,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 5,
"guinier_point_last": 69,
"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDEV9_datloglog_img.png",
"symmetry": null,
"last_modified": "2019-12-06T13:07:15.624532+01:00",
"bragg_peak": []
}
View the complete manifest.json source
{
"code": "SASDEV9",
"status": "success",
"started_at": "2026-08-11T16:22:41.460940+00:00",
"finished_at": "2026-08-11T16:22:51.141417+00:00",
"source_last_modified": "2019-12-06T13:07:15.624532+01:00",
"files": [
{
"status": "downloaded",
"url": "https://www.sasbdb.org/rest-api/entry/summary/SASDEV9/",
"path": "/data/saxsdb/sasbdb/entries/v9/sasdev9/source/summary.json",
"size": 7935,
"sha256": "6d248fa03ae000b91be4d228fd3152a4f9fd8de0cd51b8dce9c6a0e6058529fe"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/intensities_files/SASDEV9.dat",
"path": "/data/saxsdb/sasbdb/entries/v9/sasdev9/source/SASDEV9.dat",
"size": 157571,
"sha256": "ef0d48c7ec7e4aaac1e529c41a7566a2fe22a557ddb709c0ae808ca47db6b4b2",
"role": "curve"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/p_of_R_files/SASDEV9.out",
"path": "/data/saxsdb/sasbdb/entries/v9/sasdev9/source/SASDEV9.out",
"size": 47393,
"sha256": "ee31a6e22795d8f79dfa8cab1bea1f7f88939db9beaaaf6d4774a3abd3764afb",
"role": "pddf"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDEV9.sascif",
"path": "/data/saxsdb/sasbdb/entries/v9/sasdev9/source/SASDEV9.sascif",
"size": 209701,
"sha256": "ac6162b195bc34e54e0805f554fe6d9fcc0f454097292ebf3ecc83bdd6bc8f1b",
"role": "sascif"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/zip_directories/SASDEV9.zip",
"path": "/data/saxsdb/sasbdb/entries/v9/sasdev9/source/SASDEV9.zip",
"size": 52729,
"sha256": "f4e47b6779667baf1344cb9ebd053a9ab5f0853a79cdc4860b6330418173ac53",
"role": "full_entry_zip",
"zip_member_count": 4,
"zip_validation": "central_directory_readable"
}
]
}