查看完整 summary.json 原文
{
"code": "SASDV55",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/A",
"project": {
"title": "Structural dynamics of protein-protein association involved in the light-induced transition of Avena sativa LOV2 protein.",
"publication": {
"title": "Structural dynamics of protein-protein association involved in the light-induced transition of Avena sativa LOV2 protein.",
"author_list": "Kim C, Yun SR, Lee SJ, Kim SO, Lee H, Choi J, Kim JG, Kim TW, You S, Kosheleva I, Noh T, Baek J, Ihee H",
"journal": "Nat Commun",
"doi": "10.1038/s41467-024-51461-z",
"pmid": "39143073",
"published_date": "2024 Aug 14"
},
"status": "released",
"submitted_date": "2024-07-11",
"released_date": "2024-07-27"
},
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"experiment": {
"instrument": {
"detector": {
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"name": "Rayonix SX165",
"resolution": 15.0
},
"name": "Pohang Accelerator Laboratory",
"city": "Pohang",
"country": "South Korea",
"beamline_name": "4C",
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"point_source": null,
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"line_collimation_integrationwidth": null,
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"beam_profile_al": null
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"sample": {
"molecule": [
{
"long_name": "non-specific serine/threonine protein kinase",
"short_name": null,
"sequence": "FLATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAAEREGVMLIKKTAENIDEAAKEL",
"organism": "Avena sativa",
"uniprot_code": "O49003",
"uniprot_range_first": 404,
"uniprot_range_last": 546,
"oligomerization": "monomer",
"molecular_type": "protein",
"uniprot_sequence": "MASKGAGGGGGGHEEPQRPKQQLPRDSRGSLEVFNPSSSSAAVEPPSAFRPAARSASPFI\nEEATGGIEDVGKATQRAAEWGLVLQTNEQTGRPQGVSARSSGGGGSARSSSDDKAVAGAI\nPRVSEELRAALSAFQQTFVVSDASRPGHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSG\nTDPAEIAKIRQALANGSNYCGRVLNYKKDGTAFWNLLTIAPIKDEEGRVLKFIGMQVEVS\nKYTEGNKDTVVRPNGLPESLIKYDARQKDQARSSVSELLLAIKNPRSLSESTNSTFKRKS\nQESVGALTGDRPGKRSSESGSRRNSKSGARTSLQKISEVPERGSKSRKSGLYSLMSLLGM\nGPGNIEKDMLKPRDEDPLLDSDDERPESFDDELRRKEMRRGIDLATTLERIEKNFVITDP\nRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQL\nINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAAEREGVMLIKKTAENID\nEAAKELPDANLRPEDLWANHSKVVLPKPHMKDSASWRAIQKVLEGGENIDLKHFRPVKPL\nGSGDTGSVHLVELLNTGEYFAMKAMDKNVMLNRNKVHRANAEREILDMLDHPFLPTLYAS\nFQTKTHICLITDYYPGGELFLLLDRQPLKVLREDAVRFYAAEVVIALEYLHCQGIIYRDL\nKPENILLHRDGHISLTDFDLSCLTSCRPQVFLPEEANKKSRRKSRSSPIFFAEPMRASNS\nFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQRTFANILHKDIRF\nPASISVSLPARQLIYRLLHRDPSNRLGSYEGSNEIKEHPFFRGINWALVRGTAPPKLDAP\nLFPDDTDKGMGDAAAADTHTDMF",
"mw": 16.645,
"total_mw": 16.645,
"number_molecules": 1,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": "Tandem PAS-PAC domains."
}
],
"buffer": {
"name": "20 mM Tris, 200 mM NaCl",
"concentration_unit": null,
"comment": null,
"additive": null,
"concentration": null,
"pka": null,
"ph": 7.0,
"deuteration": null
},
"purity_method": null,
"name": "The dark-adapted AsLOV2 domain (Avena sativa, Oat)",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": null,
"address": null,
"full_name": "Korea Advanced Institute of Science and Technology",
"webpage": null
}
],
"contributor_name": "Hyotcherl",
"contributor_surname": "Ihee",
"orcid": "https://orcid.org/0000-0003-0397-5965"
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2021-05-15",
"storage_temperature": 24.0,
"cell_temperature": 24.0,
"exposure_time": 10.0,
"number_of_frames": 50,
"wavelength": 0.0734,
"sample_detector_distance": 3.0,
"concentration_min": null,
"concentration_max": 24.98,
"sample_volume": null,
"flow_rate": null,
"s_min": 0.252,
"s_max": 5.999,
"total_exposure_time": null,
"seccolumn": null
},
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"i0_calibration_standard": null,
"description": null,
"experiment_description": "Synchrotron SAXS data from solutions of dark-adapted AsLOV2 domain in 20 mM Tris, 200 mM NaCl, pH 7 were collected on the 4C beam line at the Pohang Accelerator Laboratory (Pohang, South Korea) using a Rayonix SX165 detector at a sample-detector distance of 3 m and at a wavelength of λ = 0.0734 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 24.98 mg/ml was measured at 24°C. 50 successive 10 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.",
"tags": [],
"intensity_unit": "arbitrary",
"experimental_mw": 16.65,
"experimental_mw_error": null,
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"pddf_dmax": 6.6,
"pddf_dmax_error": null,
"porod_volume": 21.1,
"porod_volume_error": null,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 1,
"guinier_point_last": 400,
"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDV55_datloglog_img.png",
"symmetry": null,
"last_modified": "2024-10-07T14:53:56.262293+02:00",
"bragg_peak": []
}查看完整 manifest.json 原文
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