查看完整 summary.json 原文
{
"code": "SASDVB3",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/A",
"project": {
"title": "A hidden property of the iron-sulfur protein in the mononuclear iron-bound state: species-dependent structural ordering induced by magnetic fields.",
"publication": {
"title": "A hidden property of the iron-sulfur protein in the mononuclear iron-bound state: species-dependent structural ordering induced by magnetic fields.",
"author_list": "Arai S, Soga S, Hirai M, Kobayashi R, Masai H, Kimura K, Maeda K, Nagashima H",
"journal": "FEBS J",
"doi": "10.1111/febs.70377",
"pmid": "41466526",
"published_date": "2025 Dec 30"
},
"status": "released",
"submitted_date": "2024-06-06",
"released_date": "2026-01-02"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDVB3.out",
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDVB3.dat",
"intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVB3_dat_img.png",
"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVB3_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDVB3_pofr_img.png",
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVB3_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDVB3.sascif",
"experiment": {
"instrument": {
"detector": {
"type": null,
"name": "Pilatus3 2M",
"resolution": 0.172
},
"name": "Photon Factory (PF), High Energy Accelerator Research Organization (KEK)",
"city": "Tsukuba",
"country": "Japan",
"beamline_name": "BL-10C",
"beam_geometry": null,
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
"sample_path_length": null,
"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "Pigeon iron-sulfur cluster assembly 1 homolog, mitochondrial",
"short_name": "clISCA1",
"sequence": "GPGGGGSASSASSVVRATVRAVSKRKIQATRAALTLTPSAVQKIKELLKDKPEHVGVKVGVRTRGCNGLSYTLEYTKSKGDSDEEVVQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESFNI",
"organism": "Columba livia",
"uniprot_code": "P0DN75",
"uniprot_range_first": 2,
"uniprot_range_last": 132,
"oligomerization": "unknown",
"molecular_type": "protein",
"uniprot_sequence": "MASSASSVVRATVRAVSKRKIQATRAALTLTPSAVQKIKELLKDKPEHVGVKVGVRTRGC\nNGLSYTLEYTKSKGDSDEEVVQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNI\nKGTCGCGESFNI",
"mw": 14.71,
"total_mw": 14.71,
"number_molecules": 0,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": "The clISCA1 protein forms oligomers of various sizes."
}
],
"buffer": {
"name": "20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol",
"concentration_unit": null,
"comment": null,
"additive": null,
"concentration": null,
"pka": null,
"ph": 8.0,
"deuteration": null
},
"purity_method": null,
"name": "Mononuclear iron bound form of pigeon ISCA1 under geomagnetic condition",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": null,
"address": null,
"full_name": "National Institutes for Quantum and Radiological Science and Technology ",
"webpage": null
}
],
"contributor_name": "Shigeki",
"contributor_surname": "Arai",
"orcid": "https://orcid.org/0000-0002-4819-4305"
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2021-06-08",
"storage_temperature": 4.0,
"cell_temperature": 20.0,
"exposure_time": 60.0,
"number_of_frames": 1,
"wavelength": 0.155,
"sample_detector_distance": 2.993,
"concentration_min": null,
"concentration_max": 7.0,
"sample_volume": null,
"flow_rate": null,
"s_min": 0.191,
"s_max": 1.692,
"total_exposure_time": null,
"seccolumn": null
},
"fits": [
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDVB3_fit1_model1_img.png",
"software": "DAMMIN",
"pdb_link": [],
"model_title": null,
"type_of_model": "dummy",
"software_version": null,
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDVB3_fit1_model1.cif",
"model_mw": null,
"bead_radius": null,
"log": null,
"symmetry": "P1",
"comment": null,
"user": 689
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDVB3_fit1_fixed_fit_img.png",
"software": "DAMMIN",
"chi_square_value": 0.861,
"p_value": 0.4668,
"fit_residual_plot": "SASDVB3_fit1_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDVB3_fit1.fir",
"fit_log": null,
"software_version": null,
"description": ""
}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": "5.0",
"i0_calibration_standard": null,
"description": null,
"experiment_description": null,
"tags": [],
"intensity_unit": "1/cm",
"experimental_mw": 14.709,
"experimental_mw_error": null,
"guinier_i0_mw": null,
"guinier_i0_mw_error": null,
"porod_mw": 25.0,
"porod_mw_error": null,
"pddf_i0": 0.04134,
"pddf_i0_error": null,
"guinier_i0": 0.0438304,
"guinier_i0_error": null,
"pddf_rg": 2.51,
"pddf_rg_error": null,
"guinier_rg": 2.682,
"guinier_rg_error": 0.639,
"pddf_dmax": 7.2,
"pddf_dmax_error": null,
"porod_volume": 38.86,
"porod_volume_error": null,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 1,
"guinier_point_last": 127,
"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDVB3_datloglog_img.png",
"symmetry": null,
"last_modified": "2026-01-02T14:57:41.056962+01:00",
"bragg_peak": []
}查看完整 manifest.json 原文
{
"code": "SASDVB3",
"status": "success",
"started_at": "2026-08-11T16:24:45.354234+00:00",
"finished_at": "2026-08-11T16:24:52.931960+00:00",
"source_last_modified": "2026-01-02T14:57:41.056962+01:00",
"files": [
{
"status": "downloaded",
"url": "https://www.sasbdb.org/rest-api/entry/summary/SASDVB3/",
"path": "/data/saxsdb/sasbdb/entries/b3/sasdvb3/source/summary.json",
"size": 6825,
"sha256": "c035e4312a0ab24ad36ff826688de29ec62689986328586e9132c186e916da2b"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/intensities_files/SASDVB3.dat",
"path": "/data/saxsdb/sasbdb/entries/b3/sasdvb3/source/SASDVB3.dat",
"size": 30354,
"sha256": "6134c5da2bfa23a1fff831e6a9d99c3e3e7550c2fa29914f9424bfb2a63ca4d8",
"role": "curve"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/p_of_R_files/SASDVB3.out",
"path": "/data/saxsdb/sasbdb/entries/b3/sasdvb3/source/SASDVB3.out",
"size": 61900,
"sha256": "579f8cb152f2b5c917ed6bed93f2a6719a04123324234ddef434db43432c24d5",
"role": "pddf"
},
{
"status": "not_available",
"url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDVB3.sascif",
"path": "/data/saxsdb/sasbdb/entries/b3/sasdvb3/source/SASDVB3.sascif",
"role": "sascif"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/zip_directories/SASDVB3.zip",
"path": "/data/saxsdb/sasbdb/entries/b3/sasdvb3/source/SASDVB3.zip",
"size": 50744,
"sha256": "cddc70736dce70d1934a54b4184aba40f5696b38ad2d1e627c811ef821bfe488",
"role": "full_entry_zip",
"zip_member_count": 4,
"zip_validation": "central_directory_readable"
}
]
}
