Hendra virus protein P/V/W PNT3 domain

{
  "code": "SASDVC8",
  "status": "Published",
  "type_of_curve": "SEC-SAS",
  "angular_unit": "1/A",
  "project": {
    "title": "Unraveling the molecular grammar and the structural transitions underlying the fibrillation of a viral fibrillogenic domain.",
    "publication": {
      "title": "Unraveling the molecular grammar and the structural transitions underlying the fibrillation of a viral fibrillogenic domain.",
      "author_list": "Gondelaud F, Leval J, Arora L, Walimbe A, Bignon C, Ptchelkine D, Brocca S, Mukhopadyay S, Longhi S",
      "journal": "Protein Sci",
      "doi": "10.1002/pro.70068",
      "pmid": "39985377",
      "published_date": "2025 Mar"
    },
    "status": "released",
    "submitted_date": "2024-10-14",
    "released_date": "2025-02-24"
  },
  "pddf_data": null,
  "intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDVC8.dat",
  "intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVC8_dat_img.png",
  "intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVC8_kratky_img.png",
  "pddf_plot": null,
  "intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVC8_guinier_img.png",
  "sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDVC8.sascif",
  "experiment": {
    "instrument": {
      "detector": {
        "type": null,
        "name": "Pilatus3 2M",
        "resolution": 0.172
      },
      "name": "ESRF",
      "city": "Grenoble",
      "country": "France",
      "beamline_name": "BM29",
      "beam_geometry": "point",
      "type_of_source": "X-ray synchrotron",
      "point_source": null,
      "line_collimation": null,
      "sample_path_length": null,
      "line_collimation_slitlength": null,
      "line_collimation_integrationwidth": null,
      "xray_energy": null,
      "beam_profile_ah": null,
      "beam_profile_al": null
    },
    "sample": {
      "molecule": [
        {
          "long_name": "Protein W",
          "short_name": "PNT3",
          "sequence": "MSYYHHHHHHLESTSLYKKAGFTPTEEPPVIPEYYYGSGRRGDLSKSPPRGNVNLDSIKIYTSDDEDENQLEYEDEFAKSSSEVVIDTTPEDNDSINQEEVVGDPSDQGLEHPFPLGKFPEKEETPDVRRKDS",
          "organism": "Hendra virus (isolate Horse/Autralia/Hendra/1994)",
          "uniprot_code": "P0C1C6",
          "uniprot_range_first": 200,
          "uniprot_range_last": 310,
          "oligomerization": "monomer",
          "molecular_type": "protein",
          "uniprot_sequence": "MDKLDLVNDGLDIIDFIQKNQKEIQKTYGRSSIQQPSTKDRTRAWEDFLQSTSGEHEQAE\nGGMPKNDGGTEGRNVEDLSSVTSSDGTIGQRVSNTRAWAEDPDDIQLDPMVTDVVYHDHG\nGECTGHGPSSSPERGWSYHMSGTHDGNVRAVPDTKVLPNAPKTTVPEEVREIDLIGLEDK\nFASAGLNPAAVPFVPKNQSTPTEEPPVIPEYYYGSGRRGDLSKSPPRGNVNLDSIKIYTS\nDDEDENQLEYEDEFAKSSSEVVIDTTPEDNDSINQEEVVGDPSDQGLEHPFPLGKFPEKE\nETPDVRRKDSLMQDSCKRGGVPKRLPMLSEEFECSGSDDPIIQELEREGSHPGGSLRLRE\nPPQSSGNSRNQPDRQLKTGDAASPGGVQRPGTPMPKSRIMPIKKGAQTRSLNMLGRKTCL\nGRRVVQPGMFADYPPTKKARVLLRRMSN",
          "mw": 15.198,
          "total_mw": 15.198,
          "number_molecules": 1,
          "complex_state": false,
          "deuteration": null,
          "molecule_source": "biological",
          "molecule_description": "The protein construct used for SAXS contains a non-native polyhistitine tag and additional amino acids (MSYYHHHHHHLESTSLYKKAGF)."
        }
      ],
      "buffer": {
        "name": "20 mM HEPES, 150 mM NaCl",
        "concentration_unit": null,
        "comment": "HBS",
        "additive": null,
        "concentration": null,
        "pka": null,
        "ph": 7.2,
        "deuteration": null
      },
      "purity_method": null,
      "name": "Hendra virus protein P/V/W PNT3 domain",
      "ext_coefficient": null,
      "contrast": null,
      "specific_vol": null,
      "dry_vol": null,
      "absorbption": null,
      "deuteration": null,
      "mixture": null
    },
    "contributor": [
      {
        "affiliation": [
          {
            "short_name": null,
            "address": "13288 Marseille, France",
            "full_name": "CNRS, AFMB UMR 7257 ",
            "webpage": ""
          }
        ],
        "contributor_name": "Frank",
        "contributor_surname": "Gondelaud",
        "orcid": ""
      }
    ],
    "concentration_method": null,
    "concentration_unit": null,
    "date": "2023-06-13",
    "storage_temperature": 4.0,
    "cell_temperature": 20.0,
    "exposure_time": 1.0,
    "number_of_frames": 600,
    "wavelength": 0.099,
    "sample_detector_distance": 2.835,
    "concentration_min": null,
    "concentration_max": 5.0,
    "sample_volume": 45.0,
    "flow_rate": 0.3,
    "s_min": 0.078,
    "s_max": 5.045,
    "total_exposure_time": null,
    "seccolumn": 37
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      "software": "EOM/GAJOE",
      "chi_square_value": 1.094,
      "p_value": 0.6064,
      "fit_residual_plot": "SASDVC8_fit1_fitresiduals_img.png",
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  "experiment_description": "Synchrotron SAXS data from solutions of Hendra virus protein P/V/W PNT3 domain in 20 mM HEPES, 150 mM NaCl, pH 7.2 were collected on the BM29 beam line at the ESRF (Grenoble, France) using a Pilatus3 2M detector at a sample-detector distance of 2.8 m and at a wavelength of λ = 0.099 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 45.00 μl sample at 5 mg/ml was injected at a 0.30 ml/min flow rate onto a Agilent AdvanceBio SEC 2.7 µm - 130 Å column at 20°C. 600 successive 1 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.",
  "tags": [],
  "intensity_unit": "1/cm",
  "experimental_mw": 21.2,
  "experimental_mw_error": null,
  "guinier_i0_mw": null,
  "guinier_i0_mw_error": null,
  "porod_mw": 26.0,
  "porod_mw_error": null,
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  "pddf_i0_error": null,
  "guinier_i0": 19.5438,
  "guinier_i0_error": null,
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  "pddf_rg_error": null,
  "guinier_rg": 3.422,
  "guinier_rg_error": 0.18,
  "pddf_dmax": 13.5,
  "pddf_dmax_error": null,
  "porod_volume": 41.5,
  "porod_volume_error": null,
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  "estimated_volume_error": null,
  "guinier_point_first": 1,
  "guinier_point_last": 49,
  "pddf_point_first": null,
  "pddf_point_last": null,
  "i0_calibration_standard_data": null,
  "intensities_log_log_plot": "SASDVC8_datloglog_img.png",
  "symmetry": null,
  "last_modified": "2025-02-24T10:52:45.147375+01:00",
  "bragg_peak": []
}

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  "finished_at": "2026-08-11T15:50:48.441183+00:00",
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