SASDVG2

Staphylococcal extracellular adherence protein (Eap) bound to human cathepsin-G

Data type: SASBDB experimental data Status: Published Curve type: SEC-SAS Last updated: 2024-10-07T14:58:23.076062+02:00
▼

1. Samples, Components and Experimental Conditions Sample & Experiment

Sample 1 · Staphylococcal extracellular adherence protein (Eap) bound to human cathepsin-G

Concentration— – 5.0 Buffer / pH20 mM HEPES, 140 mM NaCl / 7.4
Experimental temperature4.0 Facility / beamlineAdvanced Light Source (ALS) / 12.3.1 (SIBYLS)
Wavelength0.1127 nmExposure2.0 s × 660

Molecular Components

ComponentType / organismUniProt and ConstructOligomeric StateMolecular weight
Protein map
View sequence
AAKPLDKSSSTLHHGHSNIQIPYTITVNGTSQNILSSLTFNKNQNISYKDIENKVKSVLYFNRGISDIDLRLSKQAEYTVHFKNGTKRVIDLKSGIYTADLINTSDIKAISVNVDTKKQPKDKAKANVQVPYTITVNGTSQNILSNLTFNKNQNISYKDLEGKVKSVLESNRGITDVDLRLSKQAKYTVNFKNGTKKVIDLKSGIYTANLINSSDIKSININVDTKKHIENKAKRNYQVPYSINLNGTSTNILSNLSFSNKPWTNYKNLTSQIKSVLKHDRGISEQDLKYAKKAYYTVYFKNGGKRILQLNSKNYTANLVHAKDVKRIEITVKTGTKAKADRYVPYTIAVNGTSTPILSKLKISNKQLISYKYLNDKVKSVLKSERGISDLDLKFAKQAKYTVYFKNGKKQVVNLKSDIFTPNLFSAKDIKKIDIDVKQYTKSKKK
proteinStaphylococcus aureus (strain Mu50 / ATCC 700699)Q99QS132–478monomerMolecule count 150.322 kDa
Cathepsin G
View sequence
IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCWGSNINVTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRVSMRRGTDTLREVQLRVQRDRQCLRIFGSYDPRRQICVGDRRERKAAFKGDSGGPLLCNNVAHGIVSYGKSSGVPPEVFTRVSSFLPWIRTTMR
proteinHomo sapiensP0831122–245tetramerMolecule count 425.354 kDa

Experimental Curves

CurvePoints / columnsq rangeUncertainty qualityNegative-intensity pointsSource file
1867[3]0.011402–0.450121 1/AHas uncertainty columnMissing 033sasbdb/entries/g2/sasdvg2/source/SASDVG2.dat
▼

2. Measurements Reported by SASBDB Reported Results

MetricMethodValueUncertaintyUnit
dmaxP(r)20.2—Å
i0Guinier145.606—arbitrary
i0P(r)153.2—arbitrary
mwExperimental117.3—kDa
mwPorod100.0—kDa
porod_volumePorod166.0—ų
rgGuinier5.0320.499Å
rgP(r)5.5—Å

These values are reported by SASBDB; SAXSdb did not recalculate them from the experimental curve.

▼

3. Source Fits and Models Source Fits & Models

▶

4. Source File Index Source Files

▶

5. Experiment Description and Publication Experiment & Publication

▼

6. Complete Source Record Complete Source Record

The following content comes directly from the SASBDB entry. Missing values are shown as “—”; SAXSdb does not infer undeclared units.

Open the original SASBDB entry

Buffer and Sample Properties

Buffer name20 mM HEPES, 140 mM NaClBuffer concentration—
pH7.4Additives—
Buffer description—
Purity measurement method—Extinction coefficient—
Absorbance—Scattering contrast—
Specific volume / dry volume— / —Mixture / deuteration— / —

Acquisition Conditions and Instrument

Measurement date2023-06-03Storage / measurement temperature4.0 / 4.0
Exposure time2.0Frames660
Wavelength0.1127Sample-to-detector distance2.1
SourceX-ray synchrotronDetectorPilatus3 X 2M
Facility / beamlineAdvanced Light Source (ALS) / 12.3.1 (SIBYLS) · Berkeley, CA, USA
q range0.114 – 4.501Sample volume / flow rate60.0 / 0.65

Original SASBDB Plots

Experimental I(q)
Experimental I(q)
Experimental I(q), log-log
Experimental I(q), log-log
Guinier plot
Guinier plot
Kratky plot
Kratky plot
P(r) plot
P(r) plot

Downloadable Files

CategoryFileStatusSizeChecksumDownload and View
curvesasbdb/entries/g2/sasdvg2/source/SASDVG2.datdownloaded1426599196c15ea8f7802fc92d656497490b87a691e92aa37e2cf8165d1c7f3337da94DownloadView source fileSource site
full_entry_zipsasbdb/entries/g2/sasdvg2/source/SASDVG2.zipdownloaded1346020e067dda796dd9d762cce03d71d6885057ce69637f34e1a957996de44be033cb1DownloadView source fileSource site
pddfsasbdb/entries/g2/sasdvg2/source/SASDVG2.outdownloaded82177b32fcf13dd328deb3a8da319517a14639f331cf1534e7444a10180a8cce15b22DownloadView source fileSource site
sascifsasbdb/entries/g2/sasdvg2/source/SASDVG2.sascifnot_available——DownloadView source fileSource site
summarysasbdb/entries/g2/sasdvg2/source/summary.jsondownloaded11935975975a680a95e8a51747695bb1f7d8bb6ff94d16cb2019480a7037d9042bf64DownloadView source fileSource site
curve:source record
{
  "path": "/data/saxsdb/sasbdb/entries/g2/sasdvg2/source/SASDVG2.dat",
  "role": "curve",
  "sha256": "9196c15ea8f7802fc92d656497490b87a691e92aa37e2cf8165d1c7f3337da94",
  "size": 142659,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/intensities_files/SASDVG2.dat"
}
full_entry_zip:source record and ZIP contents (11 items)
{
  "path": "/data/saxsdb/sasbdb/entries/g2/sasdvg2/source/SASDVG2.zip",
  "role": "full_entry_zip",
  "sha256": "e067dda796dd9d762cce03d71d6885057ce69637f34e1a957996de44be033cb1",
  "size": 1346020,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/zip_directories/SASDVG2.zip",
  "zip_member_count": 11,
  "zip_members": [
    {
      "crc32": "88bcfdcc",
      "name": "SASDVG2/experimental_data/SASDVG2.dat",
      "size": 142659
    },
    {
      "crc32": "5a3285d7",
      "name": "SASDVG2/pddf/SASDVG2.out",
      "size": 82177
    },
    {
      "crc32": "2138a8fc",
      "name": "SASDVG2/SASDVG2_fit1.dat",
      "size": 49517
    },
    {
      "crc32": "a80ca3f5",
      "name": "SASDVG2/SASDVG2_fit1_model1.pdb",
      "size": 864535
    },
    {
      "crc32": "68ed1147",
      "name": "SASDVG2/SASDVG2_fit2.dat",
      "size": 49517
    },
    {
      "crc32": "e045d318",
      "name": "SASDVG2/SASDVG2_fit2_model1.pdb",
      "size": 864535
    },
    {
      "crc32": "852a187f",
      "name": "SASDVG2/SASDVG2_fit2_model2.pdb",
      "size": 864535
    },
    {
      "crc32": "c0560959",
      "name": "SASDVG2/SASDVG2_fit3.dat",
      "size": 49517
    },
    {
      "crc32": "57e6a9fa",
      "name": "SASDVG2/SASDVG2_fit3_model1.pdb",
      "size": 864535
    },
    {
      "crc32": "805d63d3",
      "name": "SASDVG2/SASDVG2_fit3_model2.pdb",
      "size": 864535
    },
    {
      "crc32": "0c384255",
      "name": "SASDVG2/SASDVG2_fit3_model3.pdb",
      "size": 864535
    }
  ],
  "zip_validation": "central_directory_readable"
}
pddf:source record
{
  "path": "/data/saxsdb/sasbdb/entries/g2/sasdvg2/source/SASDVG2.out",
  "role": "pddf",
  "sha256": "b32fcf13dd328deb3a8da319517a14639f331cf1534e7444a10180a8cce15b22",
  "size": 82177,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/p_of_R_files/SASDVG2.out"
}
sascif:source record
{
  "path": "/data/saxsdb/sasbdb/entries/g2/sasdvg2/source/SASDVG2.sascif",
  "role": "sascif",
  "status": "not_available",
  "url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDVG2.sascif"
}
summary:source record
{
  "path": "/data/saxsdb/sasbdb/entries/g2/sasdvg2/source/summary.json",
  "sha256": "975975a680a95e8a51747695bb1f7d8bb6ff94d16cb2019480a7037d9042bf64",
  "size": 11935,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/rest-api/entry/summary/SASDVG2/"
}

All source fields (unfiltered)

Every source field is expanded here, including empty values, list members and fields already shown above.

summary.json:258 field values
Field pathRaw value
codeSASDVG2
statusPublished
type_of_curveSEC-SAS
angular_unit1/A
project.titleS. aureus Eap is a polyvalent inhibitor of neutrophil serine proteases.
project.publication.titleS. aureus Eap is a polyvalent inhibitor of neutrophil serine proteases.
project.publication.author_listMishra N, Gido CD, Herdendorf TJ, Hammel M, Hura GL, Fu ZQ, Geisbrecht BV
project.publication.journalJ Biol Chem
project.publication.doi10.1016/j.jbc.2024.107627
project.publication.pmid39098536
project.publication.published_date2024 Aug 3
project.statusreleased
project.submitted_date2024-06-17
project.released_date2024-07-22
pddf_datahttps://www.sasbdb.org/media/p_of_R_files/SASDVG2.out
intensities_datahttps://www.sasbdb.org/media/intensities_files/SASDVG2.dat
intensities_log_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVG2_dat_img.png
intensities_kratky_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVG2_kratky_img.png
pddf_plothttps://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDVG2_pofr_img.png
intensities_guinier_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVG2_guinier_img.png
sascif_datahttps://www.sasbdb.org/media/sascif/sascif_files/SASDVG2.sascif
experiment.instrument.detector.typenull
experiment.instrument.detector.namePilatus3 X 2M
experiment.instrument.detector.resolution172.0
experiment.instrument.nameAdvanced Light Source (ALS)
experiment.instrument.cityBerkeley, CA
experiment.instrument.countryUSA
experiment.instrument.beamline_name12.3.1 (SIBYLS)
experiment.instrument.beam_geometry
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameProtein map
experiment.sample.molecule[0].short_nameEap
experiment.sample.molecule[0].sequenceAAKPLDKSSSTLHHGHSNIQIPYTITVNGTSQNILSSLTFNKNQNISYKDIENKVKSVLYFNRGISDIDLRLSKQAEYTVHFKNGTKRVIDLKSGIYTADLINTSDIKAISVNVDTKKQPKDKAKANVQVPYTITVNGTSQNILSNLTFNKNQNISYKDLEGKVKSVLESNRGITDVDLRLSKQAKYTVNFKNGTKKVIDLKSGIYTANLINSSDIKSININVDTKKHIENKAKRNYQVPYSINLNGTSTNILSNLSFSNKPWTNYKNLTSQIKSVLKHDRGISEQDLKYAKKAYYTVYFKNGGKRILQLNSKNYTANLVHAKDVKRIEITVKTGTKAKADRYVPYTIAVNGTSTPILSKLKISNKQLISYKYLNDKVKSVLKSERGISDLDLKFAKQAKYTVYFKNGKKQVVNLKSDIFTPNLFSAKDIKKIDIDVKQYTKSKKK
experiment.sample.molecule[0].organismStaphylococcus aureus (strain Mu50 / ATCC 700699)
experiment.sample.molecule[0].uniprot_codeQ99QS1
experiment.sample.molecule[0].uniprot_range_first32
experiment.sample.molecule[0].uniprot_range_last478
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMKFKSLITTTLALGVIASTGANFNTNEASAAAKPLDKSSSTLHHGHSNIQIPYTITVNGT SQNILSSLTFNKNQNISYKDIENKVKSVLYFNRGISDIDLRLSKQAEYTVHFKNGTKRVI DLKSGIYTADLINTSDIKAISVNVDTKKQPKDKAKANVQVPYTITVNGTSQNILSNLTFN KNQNISYKDLEGKVKSVLESNRGITDVDLRLSKQAKYTVNFKNGTKKVIDLKSGIYTANL INSSDIKSININVDTKKHIENKAKRNYQVPYSINLNGTSTNILSNLSFSNKPWTNYKNLT SQIKSVLKHDRGISEQDLKYAKKAYYTVYFKNGGKRILQLNSKNYTANLVHAKDVKRIEI TVKTGTKAKADRYVPYTIAVNGTSTPILSKLKISNKQLISYKYLNDKVKSVLKSERGISD LDLKFAKQAKYTVYFKNGKKQVVNLKSDIFTPNLFSAKDIKKIDIDVKQYTKSKKK
experiment.sample.molecule[0].mw50.322
experiment.sample.molecule[0].total_mw50.322
experiment.sample.molecule[0].number_molecules1
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionExtracellular adherence protein
experiment.sample.molecule[1].long_nameCathepsin G
experiment.sample.molecule[1].short_nameCG
experiment.sample.molecule[1].sequenceIIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCWGSNINVTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRVSMRRGTDTLREVQLRVQRDRQCLRIFGSYDPRRQICVGDRRERKAAFKGDSGGPLLCNNVAHGIVSYGKSSGVPPEVFTRVSSFLPWIRTTMR
experiment.sample.molecule[1].organismHomo sapiens
experiment.sample.molecule[1].uniprot_codeP08311
experiment.sample.molecule[1].uniprot_range_first22
experiment.sample.molecule[1].uniprot_range_last245
experiment.sample.molecule[1].oligomerizationtetramer
experiment.sample.molecule[1].molecular_typeprotein
experiment.sample.molecule[1].uniprot_sequenceMQPLLLLLAFLLPTGAEAGEIIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVL TAAHCWGSNINVTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRR NRNVNPVALPRAQEGLRPGTLCTVAGWGRVSMRRGTDTLREVQLRVQRDRQCLRIFGSYD PRRQICVGDRRERKAAFKGDSGGPLLCNNVAHGIVSYGKSSGVPPEVFTRVSSFLPWIRT TMRSFKLLDQMETPL
experiment.sample.molecule[1].mw25.354
experiment.sample.molecule[1].total_mw101.416
experiment.sample.molecule[1].number_molecules4
experiment.sample.molecule[1].complex_stateFalse
experiment.sample.molecule[1].deuterationnull
experiment.sample.molecule[1].molecule_sourcebiological
experiment.sample.molecule[1].molecule_description
experiment.sample.buffer.name20 mM HEPES, 140 mM NaCl
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.4
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameStaphylococcal extracellular adherence protein (Eap) bound to human cathepsin-G
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_namenull
experiment.contributor[0].affiliation[0].addressnull
experiment.contributor[0].affiliation[0].full_nameKansas State University
experiment.contributor[0].affiliation[0].webpagenull
experiment.contributor[0].contributor_nameNitin
experiment.contributor[0].contributor_surnameMishra
experiment.contributor[0].orcidhttps://orcid.org/0000-0001-8931-7351
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2023-06-03
experiment.storage_temperature4.0
experiment.cell_temperature4.0
experiment.exposure_time2.0
experiment.number_of_frames660
experiment.wavelength0.1127
experiment.sample_detector_distance2.1
experiment.concentration_minnull
experiment.concentration_max5.0
experiment.sample_volume60.0
experiment.flow_rate0.65
experiment.s_min0.114
experiment.s_max4.501
experiment.total_exposure_timenull
experiment.seccolumn40
fits[0].models[0].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDVG2_fit1_model1_img.png
fits[0].models[0].softwareMultiFoXS
fits[0].models[0].pdb_link[]
fits[0].models[0].model_titlenull
fits[0].models[0].type_of_modelatomic
fits[0].models[0].software_versionnull
fits[0].models[0].model_datahttps://www.sasbdb.org/media/pdb_file/SASDVG2_fit1_model1.pdb
fits[0].models[0].model_mw151.8
fits[0].models[0].bead_radiusnull
fits[0].models[0].lognull
fits[0].models[0].symmetrynull
fits[0].models[0].commentnull
fits[0].models[0].user1074
fits[0].fit_unit1/A
fits[0].fit_plothttps://www.sasbdb.org/media/fitting_files/scattering_plots/SASDVG2_fit1_fitfoxs_img.png
fits[0].softwareFoXS
fits[0].chi_square_value2.102608
fits[0].p_value0.0
fits[0].fit_residual_plotSASDVG2_fit1_fitfoxsresiduals_img.png
fits[0].fit_datahttps://www.sasbdb.org/media/fitting_files/SASDVG2_fit1.dat
fits[0].fit_lognull
fits[0].software_versionnull
fits[0].description
fits[1].models[0].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDVG2_fit2_model1_img.png
fits[1].models[0].softwareMultiFoXS
fits[1].models[0].pdb_link[]
fits[1].models[0].model_titlenull
fits[1].models[0].type_of_modelatomic
fits[1].models[0].software_versionnull
fits[1].models[0].model_datahttps://www.sasbdb.org/media/pdb_file/SASDVG2_fit2_model1.pdb
fits[1].models[0].model_mw151.8
fits[1].models[0].bead_radiusnull
fits[1].models[0].lognull
fits[1].models[0].symmetrynull
fits[1].models[0].commentnull
fits[1].models[0].user1074
fits[1].models[1].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDVG2_fit2_model2_img.png
fits[1].models[1].softwareMultiFoXS
fits[1].models[1].pdb_link[]
fits[1].models[1].model_titlenull
fits[1].models[1].type_of_modelatomic
fits[1].models[1].software_versionnull
fits[1].models[1].model_datahttps://www.sasbdb.org/media/pdb_file/SASDVG2_fit2_model2.pdb
fits[1].models[1].model_mw151.8
fits[1].models[1].bead_radiusnull
fits[1].models[1].lognull
fits[1].models[1].symmetrynull
fits[1].models[1].commentnull
fits[1].models[1].user1074
fits[1].fit_unit1/A
fits[1].fit_plothttps://www.sasbdb.org/media/fitting_files/scattering_plots/SASDVG2_fit2_fitfoxs_img.png
fits[1].softwareFoXS
fits[1].chi_square_value1.273798
fits[1].p_value0.0
fits[1].fit_residual_plotSASDVG2_fit2_fitfoxsresiduals_img.png
fits[1].fit_datahttps://www.sasbdb.org/media/fitting_files/SASDVG2_fit2.dat
fits[1].fit_lognull
fits[1].software_versionnull
fits[1].description
fits[2].models[0].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDVG2_fit3_model1_img.png
fits[2].models[0].softwareMultiFoXS
fits[2].models[0].pdb_link[]
fits[2].models[0].model_titlenull
fits[2].models[0].type_of_modelatomic
fits[2].models[0].software_versionnull
fits[2].models[0].model_datahttps://www.sasbdb.org/media/pdb_file/SASDVG2_fit3_model1.pdb
fits[2].models[0].model_mw151.8
fits[2].models[0].bead_radiusnull
fits[2].models[0].lognull
fits[2].models[0].symmetrynull
fits[2].models[0].commentnull
fits[2].models[0].user1074
fits[2].models[1].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDVG2_fit3_model2_img.png
fits[2].models[1].softwareMultiFoXS
fits[2].models[1].pdb_link[]
fits[2].models[1].model_titlenull
fits[2].models[1].type_of_modelatomic
fits[2].models[1].software_versionnull
fits[2].models[1].model_datahttps://www.sasbdb.org/media/pdb_file/SASDVG2_fit3_model2.pdb
fits[2].models[1].model_mw151.8
fits[2].models[1].bead_radiusnull
fits[2].models[1].lognull
fits[2].models[1].symmetrynull
fits[2].models[1].commentnull
fits[2].models[1].user1074
fits[2].models[2].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDVG2_fit3_model3_img.png
fits[2].models[2].softwareMultiFoXS
fits[2].models[2].pdb_link[]
fits[2].models[2].model_titlenull
fits[2].models[2].type_of_modelatomic
fits[2].models[2].software_versionnull
fits[2].models[2].model_datahttps://www.sasbdb.org/media/pdb_file/SASDVG2_fit3_model3.pdb
fits[2].models[2].model_mw151.8
fits[2].models[2].bead_radiusnull
fits[2].models[2].lognull
fits[2].models[2].symmetrynull
fits[2].models[2].commentnull
fits[2].models[2].user1074
fits[2].fit_unit1/A
fits[2].fit_plothttps://www.sasbdb.org/media/fitting_files/scattering_plots/SASDVG2_fit3_fitfoxs_img.png
fits[2].softwareFoXS
fits[2].chi_square_value1.294131
fits[2].p_value0.0
fits[2].fit_residual_plotSASDVG2_fit3_fitfoxsresiduals_img.png
fits[2].fit_datahttps://www.sasbdb.org/media/fitting_files/SASDVG2_fit3.dat
fits[2].fit_lognull
fits[2].software_versionnull
fits[2].description
estimated_volume_methodnull
pddf_softwareATSAS GNOM
pddf_software_version5.0
i0_calibration_standardnull
descriptionnull
experiment_descriptionnull
tags[]
intensity_unitarbitrary
experimental_mw117.3
experimental_mw_errornull
guinier_i0_mwnull
guinier_i0_mw_errornull
porod_mw100.0
porod_mw_errornull
pddf_i0153.2
pddf_i0_errornull
guinier_i0145.606
guinier_i0_errornull
pddf_rg5.5
pddf_rg_errornull
guinier_rg5.032
guinier_rg_error0.499
pddf_dmax20.2
pddf_dmax_errornull
porod_volume166.0
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_first7
guinier_point_last27
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDVG2_datloglog_img.png
symmetrynull
last_modified2024-10-07T14:58:23.076062+02:00
bragg_peak[]
manifest.json:34 field values
Field pathRaw value
codeSASDVG2
statussuccess
started_at2026-08-11T16:42:26.568219+00:00
finished_at2026-08-11T16:42:40.526178+00:00
source_last_modified2024-10-07T14:58:23.076062+02:00
files[0].statusdownloaded
files[0].urlhttps://www.sasbdb.org/rest-api/entry/summary/SASDVG2/
files[0].path/data/saxsdb/sasbdb/entries/g2/sasdvg2/source/summary.json
files[0].size11935
files[0].sha256975975a680a95e8a51747695bb1f7d8bb6ff94d16cb2019480a7037d9042bf64
files[1].statusdownloaded
files[1].urlhttps://www.sasbdb.org/media/intensities_files/SASDVG2.dat
files[1].path/data/saxsdb/sasbdb/entries/g2/sasdvg2/source/SASDVG2.dat
files[1].size142659
files[1].sha2569196c15ea8f7802fc92d656497490b87a691e92aa37e2cf8165d1c7f3337da94
files[1].rolecurve
files[2].statusdownloaded
files[2].urlhttps://www.sasbdb.org/media/p_of_R_files/SASDVG2.out
files[2].path/data/saxsdb/sasbdb/entries/g2/sasdvg2/source/SASDVG2.out
files[2].size82177
files[2].sha256b32fcf13dd328deb3a8da319517a14639f331cf1534e7444a10180a8cce15b22
files[2].rolepddf
files[3].statusnot_available
files[3].urlhttps://www.sasbdb.org/media/sascif/sascif_files/SASDVG2.sascif
files[3].path/data/saxsdb/sasbdb/entries/g2/sasdvg2/source/SASDVG2.sascif
files[3].rolesascif
files[4].statusdownloaded
files[4].urlhttps://www.sasbdb.org/media/zip_directories/SASDVG2.zip
files[4].path/data/saxsdb/sasbdb/entries/g2/sasdvg2/source/SASDVG2.zip
files[4].size1346020
files[4].sha256e067dda796dd9d762cce03d71d6885057ce69637f34e1a957996de44be033cb1
files[4].rolefull_entry_zip
files[4].zip_member_count11
files[4].zip_validationcentral_directory_readable
View the complete summary.json source
{
  "code": "SASDVG2",
  "status": "Published",
  "type_of_curve": "SEC-SAS",
  "angular_unit": "1/A",
  "project": {
    "title": "S. aureus Eap is a polyvalent inhibitor of neutrophil serine proteases.",
    "publication": {
      "title": "S. aureus Eap is a polyvalent inhibitor of neutrophil serine proteases.",
      "author_list": "Mishra N, Gido CD, Herdendorf TJ, Hammel M, Hura GL, Fu ZQ, Geisbrecht BV",
      "journal": "J Biol Chem",
      "doi": "10.1016/j.jbc.2024.107627",
      "pmid": "39098536",
      "published_date": "2024 Aug 3"
    },
    "status": "released",
    "submitted_date": "2024-06-17",
    "released_date": "2024-07-22"
  },
  "pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDVG2.out",
  "intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDVG2.dat",
  "intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVG2_dat_img.png",
  "intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVG2_kratky_img.png",
  "pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDVG2_pofr_img.png",
  "intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVG2_guinier_img.png",
  "sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDVG2.sascif",
  "experiment": {
    "instrument": {
      "detector": {
        "type": null,
        "name": "Pilatus3 X 2M",
        "resolution": 172.0
      },
      "name": "Advanced Light Source (ALS)",
      "city": "Berkeley, CA",
      "country": "USA",
      "beamline_name": "12.3.1 (SIBYLS)",
      "beam_geometry": "",
      "type_of_source": "X-ray synchrotron",
      "point_source": null,
      "line_collimation": null,
      "sample_path_length": null,
      "line_collimation_slitlength": null,
      "line_collimation_integrationwidth": null,
      "xray_energy": null,
      "beam_profile_ah": null,
      "beam_profile_al": null
    },
    "sample": {
      "molecule": [
        {
          "long_name": "Protein map",
          "short_name": "Eap",
          "sequence": "AAKPLDKSSSTLHHGHSNIQIPYTITVNGTSQNILSSLTFNKNQNISYKDIENKVKSVLYFNRGISDIDLRLSKQAEYTVHFKNGTKRVIDLKSGIYTADLINTSDIKAISVNVDTKKQPKDKAKANVQVPYTITVNGTSQNILSNLTFNKNQNISYKDLEGKVKSVLESNRGITDVDLRLSKQAKYTVNFKNGTKKVIDLKSGIYTANLINSSDIKSININVDTKKHIENKAKRNYQVPYSINLNGTSTNILSNLSFSNKPWTNYKNLTSQIKSVLKHDRGISEQDLKYAKKAYYTVYFKNGGKRILQLNSKNYTANLVHAKDVKRIEITVKTGTKAKADRYVPYTIAVNGTSTPILSKLKISNKQLISYKYLNDKVKSVLKSERGISDLDLKFAKQAKYTVYFKNGKKQVVNLKSDIFTPNLFSAKDIKKIDIDVKQYTKSKKK",
          "organism": "Staphylococcus aureus (strain Mu50 / ATCC 700699)",
          "uniprot_code": "Q99QS1",
          "uniprot_range_first": 32,
          "uniprot_range_last": 478,
          "oligomerization": "monomer",
          "molecular_type": "protein",
          "uniprot_sequence": "MKFKSLITTTLALGVIASTGANFNTNEASAAAKPLDKSSSTLHHGHSNIQIPYTITVNGT\nSQNILSSLTFNKNQNISYKDIENKVKSVLYFNRGISDIDLRLSKQAEYTVHFKNGTKRVI\nDLKSGIYTADLINTSDIKAISVNVDTKKQPKDKAKANVQVPYTITVNGTSQNILSNLTFN\nKNQNISYKDLEGKVKSVLESNRGITDVDLRLSKQAKYTVNFKNGTKKVIDLKSGIYTANL\nINSSDIKSININVDTKKHIENKAKRNYQVPYSINLNGTSTNILSNLSFSNKPWTNYKNLT\nSQIKSVLKHDRGISEQDLKYAKKAYYTVYFKNGGKRILQLNSKNYTANLVHAKDVKRIEI\nTVKTGTKAKADRYVPYTIAVNGTSTPILSKLKISNKQLISYKYLNDKVKSVLKSERGISD\nLDLKFAKQAKYTVYFKNGKKQVVNLKSDIFTPNLFSAKDIKKIDIDVKQYTKSKKK",
          "mw": 50.322,
          "total_mw": 50.322,
          "number_molecules": 1,
          "complex_state": false,
          "deuteration": null,
          "molecule_source": "biological",
          "molecule_description": "Extracellular adherence protein"
        },
        {
          "long_name": "Cathepsin G",
          "short_name": "CG",
          "sequence": "IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCWGSNINVTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRVSMRRGTDTLREVQLRVQRDRQCLRIFGSYDPRRQICVGDRRERKAAFKGDSGGPLLCNNVAHGIVSYGKSSGVPPEVFTRVSSFLPWIRTTMR",
          "organism": "Homo sapiens",
          "uniprot_code": "P08311",
          "uniprot_range_first": 22,
          "uniprot_range_last": 245,
          "oligomerization": "tetramer",
          "molecular_type": "protein",
          "uniprot_sequence": "MQPLLLLLAFLLPTGAEAGEIIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVL\nTAAHCWGSNINVTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRR\nNRNVNPVALPRAQEGLRPGTLCTVAGWGRVSMRRGTDTLREVQLRVQRDRQCLRIFGSYD\nPRRQICVGDRRERKAAFKGDSGGPLLCNNVAHGIVSYGKSSGVPPEVFTRVSSFLPWIRT\nTMRSFKLLDQMETPL",
          "mw": 25.354,
          "total_mw": 101.416,
          "number_molecules": 4,
          "complex_state": false,
          "deuteration": null,
          "molecule_source": "biological",
          "molecule_description": ""
        }
      ],
      "buffer": {
        "name": "20 mM HEPES, 140 mM NaCl",
        "concentration_unit": null,
        "comment": null,
        "additive": null,
        "concentration": null,
        "pka": null,
        "ph": 7.4,
        "deuteration": null
      },
      "purity_method": null,
      "name": "Staphylococcal extracellular adherence protein (Eap) bound to human cathepsin-G",
      "ext_coefficient": null,
      "contrast": null,
      "specific_vol": null,
      "dry_vol": null,
      "absorbption": null,
      "deuteration": null,
      "mixture": null
    },
    "contributor": [
      {
        "affiliation": [
          {
            "short_name": null,
            "address": null,
            "full_name": "Kansas State University",
            "webpage": null
          }
        ],
        "contributor_name": "Nitin",
        "contributor_surname": "Mishra",
        "orcid": "https://orcid.org/0000-0001-8931-7351"
      }
    ],
    "concentration_method": null,
    "concentration_unit": null,
    "date": "2023-06-03",
    "storage_temperature": 4.0,
    "cell_temperature": 4.0,
    "exposure_time": 2.0,
    "number_of_frames": 660,
    "wavelength": 0.1127,
    "sample_detector_distance": 2.1,
    "concentration_min": null,
    "concentration_max": 5.0,
    "sample_volume": 60.0,
    "flow_rate": 0.65,
    "s_min": 0.114,
    "s_max": 4.501,
    "total_exposure_time": null,
    "seccolumn": 40
  },
  "fits": [
    {
      "models": [
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDVG2_fit1_model1_img.png",
          "software": "MultiFoXS",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "atomic",
          "software_version": null,
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDVG2_fit1_model1.pdb",
          "model_mw": 151.8,
          "bead_radius": null,
          "log": null,
          "symmetry": null,
          "comment": null,
          "user": 1074
        }
      ],
      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDVG2_fit1_fitfoxs_img.png",
      "software": "FoXS",
      "chi_square_value": 2.102608,
      "p_value": 0.0,
      "fit_residual_plot": "SASDVG2_fit1_fitfoxsresiduals_img.png",
      "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDVG2_fit1.dat",
      "fit_log": null,
      "software_version": null,
      "description": ""
    },
    {
      "models": [
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDVG2_fit2_model1_img.png",
          "software": "MultiFoXS",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "atomic",
          "software_version": null,
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDVG2_fit2_model1.pdb",
          "model_mw": 151.8,
          "bead_radius": null,
          "log": null,
          "symmetry": null,
          "comment": null,
          "user": 1074
        },
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDVG2_fit2_model2_img.png",
          "software": "MultiFoXS",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "atomic",
          "software_version": null,
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDVG2_fit2_model2.pdb",
          "model_mw": 151.8,
          "bead_radius": null,
          "log": null,
          "symmetry": null,
          "comment": null,
          "user": 1074
        }
      ],
      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDVG2_fit2_fitfoxs_img.png",
      "software": "FoXS",
      "chi_square_value": 1.273798,
      "p_value": 0.0,
      "fit_residual_plot": "SASDVG2_fit2_fitfoxsresiduals_img.png",
      "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDVG2_fit2.dat",
      "fit_log": null,
      "software_version": null,
      "description": ""
    },
    {
      "models": [
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDVG2_fit3_model1_img.png",
          "software": "MultiFoXS",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "atomic",
          "software_version": null,
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDVG2_fit3_model1.pdb",
          "model_mw": 151.8,
          "bead_radius": null,
          "log": null,
          "symmetry": null,
          "comment": null,
          "user": 1074
        },
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDVG2_fit3_model2_img.png",
          "software": "MultiFoXS",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "atomic",
          "software_version": null,
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDVG2_fit3_model2.pdb",
          "model_mw": 151.8,
          "bead_radius": null,
          "log": null,
          "symmetry": null,
          "comment": null,
          "user": 1074
        },
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDVG2_fit3_model3_img.png",
          "software": "MultiFoXS",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "atomic",
          "software_version": null,
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDVG2_fit3_model3.pdb",
          "model_mw": 151.8,
          "bead_radius": null,
          "log": null,
          "symmetry": null,
          "comment": null,
          "user": 1074
        }
      ],
      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDVG2_fit3_fitfoxs_img.png",
      "software": "FoXS",
      "chi_square_value": 1.294131,
      "p_value": 0.0,
      "fit_residual_plot": "SASDVG2_fit3_fitfoxsresiduals_img.png",
      "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDVG2_fit3.dat",
      "fit_log": null,
      "software_version": null,
      "description": ""
    }
  ],
  "estimated_volume_method": null,
  "pddf_software": "ATSAS GNOM",
  "pddf_software_version": "5.0",
  "i0_calibration_standard": null,
  "description": null,
  "experiment_description": null,
  "tags": [],
  "intensity_unit": "arbitrary",
  "experimental_mw": 117.3,
  "experimental_mw_error": null,
  "guinier_i0_mw": null,
  "guinier_i0_mw_error": null,
  "porod_mw": 100.0,
  "porod_mw_error": null,
  "pddf_i0": 153.2,
  "pddf_i0_error": null,
  "guinier_i0": 145.606,
  "guinier_i0_error": null,
  "pddf_rg": 5.5,
  "pddf_rg_error": null,
  "guinier_rg": 5.032,
  "guinier_rg_error": 0.499,
  "pddf_dmax": 20.2,
  "pddf_dmax_error": null,
  "porod_volume": 166.0,
  "porod_volume_error": null,
  "estimated_volume": null,
  "estimated_volume_error": null,
  "guinier_point_first": 7,
  "guinier_point_last": 27,
  "pddf_point_first": null,
  "pddf_point_last": null,
  "i0_calibration_standard_data": null,
  "intensities_log_log_plot": "SASDVG2_datloglog_img.png",
  "symmetry": null,
  "last_modified": "2024-10-07T14:58:23.076062+02:00",
  "bragg_peak": []
}
View the complete manifest.json source
{
  "code": "SASDVG2",
  "status": "success",
  "started_at": "2026-08-11T16:42:26.568219+00:00",
  "finished_at": "2026-08-11T16:42:40.526178+00:00",
  "source_last_modified": "2024-10-07T14:58:23.076062+02:00",
  "files": [
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/rest-api/entry/summary/SASDVG2/",
      "path": "/data/saxsdb/sasbdb/entries/g2/sasdvg2/source/summary.json",
      "size": 11935,
      "sha256": "975975a680a95e8a51747695bb1f7d8bb6ff94d16cb2019480a7037d9042bf64"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/intensities_files/SASDVG2.dat",
      "path": "/data/saxsdb/sasbdb/entries/g2/sasdvg2/source/SASDVG2.dat",
      "size": 142659,
      "sha256": "9196c15ea8f7802fc92d656497490b87a691e92aa37e2cf8165d1c7f3337da94",
      "role": "curve"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/p_of_R_files/SASDVG2.out",
      "path": "/data/saxsdb/sasbdb/entries/g2/sasdvg2/source/SASDVG2.out",
      "size": 82177,
      "sha256": "b32fcf13dd328deb3a8da319517a14639f331cf1534e7444a10180a8cce15b22",
      "role": "pddf"
    },
    {
      "status": "not_available",
      "url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDVG2.sascif",
      "path": "/data/saxsdb/sasbdb/entries/g2/sasdvg2/source/SASDVG2.sascif",
      "role": "sascif"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/zip_directories/SASDVG2.zip",
      "path": "/data/saxsdb/sasbdb/entries/g2/sasdvg2/source/SASDVG2.zip",
      "size": 1346020,
      "sha256": "e067dda796dd9d762cce03d71d6885057ce69637f34e1a957996de44be033cb1",
      "role": "full_entry_zip",
      "zip_member_count": 11,
      "zip_validation": "central_directory_readable"
    }
  ]
}